Wall clock time and date at job start Tue Mar 31 2020 22:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47008 * 274.99333 * 3 2 1 5 5 H 1.48497 * 109.47223 * 34.99238 * 3 2 1 6 6 H 1.48495 * 109.47180 * 154.99346 * 3 2 1 7 7 C 1.38815 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 174.85729 * 7 2 1 9 9 N 1.36934 * 119.99796 * 354.86255 * 7 2 1 10 10 C 1.47575 * 134.49424 * 184.88999 * 9 7 2 11 11 C 1.53947 * 86.12114 * 155.35899 * 10 9 7 12 12 N 1.46897 * 113.74504 * 137.95480 * 11 10 9 13 13 C 1.46899 * 111.00155 * 181.92605 * 12 11 10 14 14 C 1.53236 * 109.33921 * 187.25210 * 13 12 11 15 15 N 1.47080 * 108.52068 * 306.17067 * 14 13 12 16 16 C 1.34780 * 120.87882 * 231.18809 * 15 14 13 17 17 O 1.21282 * 120.00042 * 184.43533 * 16 15 14 18 18 C 1.50702 * 120.00260 * 4.15933 * 16 15 14 19 19 H 1.09003 * 109.46559 * 343.93561 * 18 16 15 20 20 F 1.39891 * 109.47127 * 103.93645 * 18 16 15 21 21 C 1.53004 * 109.47092 * 223.94070 * 18 16 15 22 22 F 1.39896 * 109.46954 * 59.99685 * 21 18 16 23 23 F 1.39902 * 109.46849 * 179.97438 * 21 18 16 24 24 F 1.39900 * 109.46924 * 299.99989 * 21 18 16 25 25 C 1.47071 * 118.24092 * 51.45964 * 15 14 13 26 26 C 1.46900 * 110.99819 * 306.22963 * 12 11 10 27 27 C 1.47813 * 134.45591 * 4.75759 * 9 7 2 28 28 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.76723 * 41.05945 * 10 9 7 30 30 H 1.09001 * 113.87345 * 269.67607 * 10 9 7 31 31 H 1.09001 * 113.73884 * 269.15772 * 11 10 9 32 32 H 1.09006 * 109.49160 * 67.29554 * 13 12 11 33 33 H 1.08995 * 109.49117 * 307.21249 * 13 12 11 34 34 H 1.08999 * 109.62974 * 186.46320 * 14 13 12 35 35 H 1.08998 * 109.62823 * 65.87910 * 14 13 12 36 36 H 1.09004 * 109.62916 * 68.24870 * 25 15 14 37 37 H 1.08995 * 109.63365 * 188.83383 * 25 15 14 38 38 H 1.09001 * 109.48978 * 292.70411 * 26 12 11 39 39 H 1.09000 * 109.49693 * 52.78537 * 26 12 11 40 40 H 1.08998 * 113.77135 * 90.38373 * 27 9 7 41 41 H 1.09005 * 113.83929 * 318.91708 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2041 -0.0833 9 7 1.3297 -2.3856 0.1073 10 6 1.7292 -3.8009 0.2305 11 6 0.3593 -4.0208 0.8977 12 7 -0.3208 -5.2478 0.4618 13 6 -1.6381 -5.3744 1.0994 14 6 -2.2348 -6.7453 0.7634 15 7 -2.2327 -6.9102 -0.6981 16 6 -3.3515 -7.2765 -1.3544 17 8 -3.3130 -7.4861 -2.5484 18 6 -4.6490 -7.4316 -0.6037 19 1 -4.4452 -7.4913 0.4654 20 9 -5.4712 -6.3295 -0.8610 21 6 -5.3529 -8.7109 -1.0609 22 9 -4.5305 -9.8130 -0.8036 23 9 -6.5571 -8.8552 -0.3635 24 9 -5.6143 -8.6344 -2.4331 25 6 -0.9760 -6.6709 -1.4237 26 6 -0.4303 -5.2972 -1.0022 27 6 -0.1003 -2.7574 0.1476 28 1 -0.4850 0.8400 -0.0004 29 1 2.5745 -3.9621 0.8994 30 1 1.8396 -4.3130 -0.7254 31 1 0.3756 -3.9061 1.9815 32 1 -2.2982 -4.5898 0.7293 33 1 -1.5299 -5.2797 2.1798 34 1 -3.2574 -6.8010 1.1367 35 1 -1.6316 -7.5293 1.2212 36 1 -0.2542 -7.4479 -1.1720 37 1 -1.1659 -6.6773 -2.4969 38 1 -1.1072 -4.5137 -1.3429 39 1 0.5538 -5.1465 -1.4460 40 1 -0.5293 -2.9608 -0.8335 41 1 -0.7130 -2.0871 0.7505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941417218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:24 Heat of formation + Delta-G solvation = -162.337135 kcal Electronic energy + Delta-G solvation = -30824.297989 eV Core-core repulsion = 25855.031691 eV Total energy + Delta-G solvation = -4969.266297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.48699 -49.61197 -48.86421 -48.72798 -41.58629 -40.38999 -38.13333 -35.38608 -33.86181 -32.96344 -31.64215 -29.78239 -27.89676 -26.64195 -25.91855 -24.65584 -24.32383 -22.79520 -21.11852 -20.43143 -19.95690 -19.64985 -19.34594 -18.77919 -18.64950 -17.73671 -17.15510 -16.94250 -16.74242 -16.40727 -16.16162 -15.78630 -15.68916 -15.64944 -15.61382 -15.47791 -15.34148 -15.24866 -14.97671 -14.94956 -14.45088 -14.12328 -13.94866 -13.87840 -13.44735 -13.41551 -13.19617 -12.86793 -12.80109 -12.58685 -12.30213 -12.24794 -12.02015 -11.89108 -11.78540 -11.44328 -11.18041 -10.81222 -10.03540 -9.29154 -8.86737 -7.92937 -5.26583 0.73947 1.01597 1.44001 1.44995 1.52356 1.54691 2.21268 2.42258 2.50567 2.63206 2.77269 2.86626 3.24806 3.27991 3.47812 3.59143 3.77009 3.81668 3.94269 4.07611 4.19605 4.34382 4.43752 4.47758 4.58784 4.66877 4.79725 4.87380 4.93515 4.98206 5.07443 5.16717 5.23059 5.37913 5.48579 5.88667 5.91287 6.05401 6.15666 6.54285 6.89068 7.58743 8.53829 9.22921 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.002524 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.773545 B =11092.563276 C =11449.215647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.233 4.233 8 H 0.084 0.916 9 N -0.640 5.640 10 C 0.125 3.875 11 C 0.071 3.929 12 N -0.513 5.513 13 C 0.033 3.967 14 C 0.102 3.898 15 N -0.590 5.590 16 C 0.490 3.510 17 O -0.542 6.542 18 C 0.036 3.964 19 H 0.198 0.802 20 F -0.161 7.161 21 C 0.448 3.552 22 F -0.164 7.164 23 F -0.163 7.163 24 F -0.175 7.175 25 C 0.126 3.874 26 C 0.039 3.961 27 C 0.128 3.872 28 H 0.247 0.753 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.023 0.977 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.018 0.982 39 H 0.090 0.910 40 H 0.012 0.988 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 -21.269 5.054 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.362 4.362 8 H 0.102 0.898 9 N -0.367 5.367 10 C 0.000 4.000 11 C -0.039 4.039 12 N -0.237 5.237 13 C -0.095 4.095 14 C -0.019 4.019 15 N -0.322 5.322 16 C 0.273 3.727 17 O -0.419 6.419 18 C -0.004 4.004 19 H 0.215 0.785 20 F -0.142 7.142 21 C 0.392 3.608 22 F -0.145 7.145 23 F -0.144 7.144 24 F -0.156 7.156 25 C 0.004 3.996 26 C -0.090 4.090 27 C 0.001 3.999 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.042 0.958 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.108 0.892 40 H 0.030 0.970 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.672 -21.466 4.554 23.595 hybrid contribution -0.445 2.161 -0.938 2.397 sum -9.117 -19.305 3.616 21.654 Atomic orbital electron populations 1.70022 1.06524 1.25479 1.58261 1.25634 0.96500 1.00918 1.02956 0.85076 0.78006 0.79194 0.77157 1.21782 1.22002 1.18905 1.19425 0.91143 0.83394 1.42204 0.89798 1.46249 1.03506 1.01252 1.85733 1.22859 0.96166 0.83250 0.97729 1.23809 0.94461 0.85981 0.99606 1.62096 1.19787 1.35668 1.06109 1.22599 0.88941 0.96293 1.01707 1.22478 1.04009 0.98292 0.77103 1.48307 1.09140 1.64948 1.09826 1.20403 0.85462 0.79135 0.87659 1.90826 1.85224 1.50189 1.15701 1.23124 0.87699 0.82052 1.07500 0.78517 1.93021 1.72245 1.52850 1.96048 1.20405 0.78233 0.86045 0.76080 1.93252 1.71860 1.55673 1.93721 1.93268 1.46447 1.96148 1.78561 1.93277 1.94099 1.96325 1.31890 1.21921 0.83925 0.96678 0.97071 1.22629 1.01298 0.95768 0.89260 1.22907 0.87492 0.93474 0.96019 0.94422 0.92152 0.93252 0.86941 0.95825 0.86622 0.86355 0.86229 0.87574 0.89747 0.96335 0.89202 0.97002 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 11.36 21.65 0.25 -57.42 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.64 -32.01 3.70 -716.59 -2.65 -34.66 16 10 C 0.12 4.65 8.40 86.49 0.73 5.38 16 11 C 0.07 2.33 4.05 46.67 0.19 2.52 16 12 N -0.51 -12.61 4.77 -875.03 -4.17 -16.78 16 13 C 0.03 0.61 5.55 86.38 0.48 1.09 16 14 C 0.10 1.17 6.47 86.35 0.56 1.73 16 15 N -0.59 -11.06 3.00 -817.06 -2.45 -13.52 16 16 C 0.49 10.83 6.79 87.66 0.60 11.42 16 17 O -0.54 -16.54 15.04 -3.03 -0.05 -16.59 16 18 C 0.04 0.58 3.39 29.85 0.10 0.68 16 19 H 0.20 1.03 5.41 -2.39 -0.01 1.02 16 20 F -0.16 -3.32 17.03 44.97 0.77 -2.55 16 21 C 0.45 8.09 2.85 71.98 0.21 8.29 16 22 F -0.16 -2.78 17.02 44.97 0.77 -2.02 16 23 F -0.16 -2.67 17.30 44.97 0.78 -1.89 16 24 F -0.17 -4.31 15.94 44.97 0.72 -3.60 16 25 C 0.13 2.67 6.61 86.51 0.57 3.24 16 26 C 0.04 1.04 4.65 86.54 0.40 1.44 16 27 C 0.13 5.86 6.88 86.44 0.59 6.46 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.75 5.93 -2.39 -0.01 1.74 16 31 H 0.11 3.55 8.11 -2.39 -0.02 3.53 16 32 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.12 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.12 0.54 5.25 -2.39 -0.01 0.52 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.04 7.09 -2.39 -0.02 2.03 16 38 H 0.02 0.61 6.38 -2.39 -0.02 0.60 16 39 H 0.09 2.52 5.81 -2.39 -0.01 2.51 16 40 H 0.01 0.59 5.76 -2.39 -0.01 0.58 16 41 H 0.03 1.84 7.07 -2.38 -0.02 1.82 16 Total: -1.00 -74.59 341.48 2.86 -71.73 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.09 Total: 2.84 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 5.79 Total: 26.84 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -9.03 Total: -122.38 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 3.03 Total: -10.06 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.59 2.86 -71.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941417218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.604 kcal (2) G-P(sol) polarization free energy of solvation -74.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds