Wall clock time and date at job start Tue Mar 31 2020 22:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21521 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.48150 * 120.00420 * 180.02562 * 19 18 16 22 22 C 1.40033 * 120.86091 * 359.71981 * 21 19 18 23 23 C 1.38150 * 119.26354 * 179.72956 * 22 21 19 24 24 N 1.31713 * 121.06679 * 0.56244 * 23 22 21 25 25 C 1.32815 * 121.89978 * 359.71224 * 24 23 22 26 26 C 1.47661 * 119.69630 * 179.97438 * 25 24 23 27 27 C 1.36031 * 125.93929 * 0.02770 * 26 25 24 28 28 C 1.40831 * 106.73685 * 179.97438 * 27 26 25 29 29 C 1.34804 * 107.04259 * 359.97438 * 28 27 26 30 30 O 1.34232 * 108.68676 * 359.77138 * 29 28 27 31 31 C 1.39468 * 120.86660 * 180.02562 * 21 19 18 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.07999 * 120.36566 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.46164 * 180.25105 * 23 22 21 40 40 H 1.07999 * 126.62912 * 359.97438 * 27 26 25 41 41 H 1.08004 * 126.47359 * 179.97438 * 28 27 26 42 42 H 1.08000 * 125.65570 * 180.02562 * 29 28 27 43 43 H 1.07999 * 120.56103 * 0.02562 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1996 -7.5037 0.6936 21 6 -1.9687 -8.4876 -1.2843 22 6 -2.1431 -8.3778 -2.6694 23 6 -2.7296 -9.4200 -3.3609 24 7 -3.1354 -10.5066 -2.7368 25 6 -2.9971 -10.6552 -1.4243 26 6 -3.4701 -11.8939 -0.7744 27 6 -4.0587 -12.9489 -1.3997 28 6 -4.3442 -13.9028 -0.4037 29 6 -3.9201 -13.3893 0.7683 30 8 -3.3879 -12.1783 0.5398 31 6 -2.4094 -9.6505 -0.6531 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -1.8183 -7.4901 -3.1919 39 1 -2.8619 -9.3404 -4.4299 40 1 -4.2668 -13.0378 -2.4557 41 1 -4.8142 -14.8639 -0.5512 42 1 -3.9924 -13.8738 1.7308 43 1 -2.2981 -9.7720 0.4142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960463887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:55 Heat of formation + Delta-G solvation = 93.306742 kcal Electronic energy + Delta-G solvation = -27130.640479 eV Core-core repulsion = 23145.085697 eV Total energy + Delta-G solvation = -3985.554782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91463 -40.84038 -39.48944 -38.18047 -34.62115 -33.75224 -33.15468 -32.57019 -32.35488 -30.19600 -28.99520 -27.10724 -26.08497 -24.99523 -24.13950 -22.43995 -21.67679 -21.41330 -20.60953 -20.19698 -19.25789 -18.65885 -17.45323 -17.06416 -16.81025 -16.46817 -16.12070 -15.83067 -15.67356 -15.12680 -14.74132 -14.53181 -14.19604 -14.06078 -13.63899 -13.38534 -13.25162 -13.17867 -12.85992 -12.76500 -12.31518 -12.19490 -11.58901 -11.39310 -11.14810 -10.86042 -10.53915 -10.49390 -10.37985 -10.28916 -10.25378 -10.10202 -10.04741 -9.90460 -9.70817 -9.25837 -8.84758 -8.47829 -8.45829 -6.96399 -5.69766 -3.13982 0.06856 0.47570 1.52630 2.23851 2.30825 2.73889 2.82654 3.38224 3.42313 3.43607 3.50948 3.89806 4.17546 4.20932 4.28578 4.43886 4.47598 4.55127 4.65074 4.66775 4.85137 5.09957 5.25306 5.27174 5.30504 5.35748 5.42015 5.52388 5.53237 5.60594 5.69829 5.75144 5.84947 6.03744 6.05675 6.12397 6.19125 6.48549 6.62738 6.66930 6.70828 6.83535 7.27122 7.36117 7.38841 7.50606 7.75281 8.02891 8.23450 9.08771 9.73015 10.43686 11.33680 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.809241 B =15687.357887 C =16069.878796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.155 3.845 11 C -0.169 4.169 12 H 0.103 0.897 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.160 3.840 16 C 0.089 3.911 17 H 0.133 0.867 18 N -0.686 5.686 19 C 0.558 3.442 20 O -0.524 6.524 21 C -0.076 4.076 22 C -0.141 4.141 23 C 0.110 3.890 24 N -0.457 5.457 25 C 0.198 3.802 26 C 0.014 3.986 27 C -0.149 4.149 28 C -0.221 4.221 29 C -0.020 4.020 30 O -0.167 6.167 31 C -0.097 4.097 32 H 0.254 0.746 33 H 0.138 0.862 34 H 0.019 0.981 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.399 0.601 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.209 0.791 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -25.274 -6.235 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.749 3.251 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.190 4.190 12 H 0.121 0.879 13 C -0.205 4.205 14 H 0.121 0.879 15 C 0.033 3.967 16 C -0.016 4.016 17 H 0.151 0.849 18 N -0.335 5.335 19 C 0.344 3.656 20 O -0.400 6.400 21 C -0.087 4.087 22 C -0.161 4.161 23 C -0.048 4.048 24 N -0.168 5.168 25 C 0.062 3.938 26 C -0.036 4.036 27 C -0.170 4.170 28 C -0.240 4.240 29 C -0.089 4.089 30 O -0.062 6.062 31 C -0.117 4.117 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.234 0.766 38 H 0.163 0.837 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.171 0.829 42 H 0.225 0.775 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.063 -25.482 -5.601 27.620 hybrid contribution 0.689 1.233 -0.295 1.443 sum -8.374 -24.249 -5.896 26.323 Atomic orbital electron populations 1.69463 1.04975 1.24946 1.57835 1.24759 0.95711 0.97734 1.02679 0.86082 0.78345 0.82758 0.77893 1.21184 1.21519 1.21186 1.19070 0.90385 0.82145 1.42769 0.90255 1.46121 1.01295 0.99381 1.85670 1.22577 0.85460 0.95140 0.93714 1.24667 0.99719 0.91586 1.03016 0.87926 1.24401 0.91147 1.02524 1.02402 0.87884 1.21078 0.94817 0.85800 0.94993 1.22011 0.97907 0.85376 0.96342 0.84947 1.45286 1.60173 1.16737 1.11267 1.18041 0.78587 0.81805 0.87203 1.90805 1.55488 1.79749 1.13946 1.20363 0.99091 0.95224 0.93979 1.22482 0.99100 1.00893 0.93635 1.22675 0.93902 0.87665 1.00561 1.67311 1.16301 1.24534 1.08607 1.18156 0.96261 0.90323 0.89052 1.19633 1.06877 0.95847 0.81237 1.21908 1.01289 0.92607 1.01174 1.21870 1.07447 1.02237 0.92459 1.24281 0.99754 0.83987 1.00849 1.84061 1.63497 1.33246 1.25346 1.22272 0.95343 0.91728 1.02394 0.93481 0.84525 0.96337 0.95481 0.92945 0.76563 0.83748 0.81165 0.82441 0.82872 0.77451 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.12 55.49 0.56 -25.76 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -5.92 10.42 -15.06 -0.16 -6.07 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.19 3.46 -165.73 -0.57 -15.76 16 10 C 0.16 3.67 6.43 -0.29 0.00 3.67 16 11 C -0.17 -3.13 6.96 -89.22 -0.62 -3.75 16 12 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 13 C -0.18 -3.21 7.05 -89.24 -0.63 -3.84 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.16 3.33 7.05 -2.43 -0.02 3.31 16 16 C 0.09 1.47 5.97 -67.94 -0.41 1.06 16 17 H 0.13 2.47 7.40 -51.93 -0.38 2.09 16 18 N -0.69 -8.95 5.52 -54.66 -0.30 -9.25 16 19 C 0.56 7.89 7.80 -12.19 -0.10 7.80 16 20 O -0.52 -9.40 16.00 5.35 0.09 -9.31 16 21 C -0.08 -0.86 5.90 -104.70 -0.62 -1.48 16 22 C -0.14 -1.15 9.61 -38.94 -0.37 -1.53 16 23 C 0.11 0.86 11.16 -17.63 -0.20 0.66 16 24 N -0.46 -4.68 10.02 -9.91 -0.10 -4.78 16 25 C 0.20 2.22 6.75 -83.08 -0.56 1.66 16 26 C 0.01 0.16 7.03 -36.53 -0.26 -0.10 16 27 C -0.15 -1.38 10.58 -39.39 -0.42 -1.80 16 28 C -0.22 -1.61 10.89 -39.82 -0.43 -2.05 16 29 C -0.02 -0.14 12.08 29.51 0.36 0.21 16 30 O -0.17 -1.72 10.39 4.74 0.05 -1.67 16 31 C -0.10 -1.14 9.32 -38.61 -0.36 -1.50 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.14 3.61 5.34 -51.93 -0.28 3.33 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.40 3.92 6.96 -40.82 -0.28 3.64 16 38 H 0.14 0.77 6.52 -52.49 -0.34 0.43 16 39 H 0.17 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.15 1.88 7.58 -52.49 -0.40 1.49 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -33.47 369.77 -9.65 -43.12 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.04 Total: 5.34 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.88 Total: -4.20 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.41 Total: -55.55 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.13 Total: -10.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.47 -9.65 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960463887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.429 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds