Wall clock time and date at job start Tue Mar 31 2020 22:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99734 * 2 1 4 4 H 1.48504 * 109.47302 * 239.99832 * 3 2 1 5 5 H 1.48499 * 109.47436 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47063 * 120.00133 * 3 2 1 7 7 C 1.38808 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.51826 * 127.61033 * 359.67089 * 9 7 2 11 11 C 1.54391 * 102.86597 * 140.54207 * 10 9 7 12 12 H 1.09002 * 117.61671 * 243.59303 * 11 10 9 13 13 C 1.54285 * 106.22189 * 24.11779 * 11 10 9 14 14 H 1.09007 * 121.81562 * 221.52879 * 13 11 10 15 15 C 1.48144 * 127.83598 * 179.97438 * 9 7 2 16 16 C 1.52992 * 59.72383 * 113.48963 * 13 11 10 17 17 H 1.09003 * 117.44347 * 252.34940 * 16 13 11 18 18 N 1.46497 * 117.40891 * 107.66215 * 16 13 11 19 19 C 1.34773 * 120.00197 * 135.77194 * 18 16 13 20 20 O 1.21521 * 120.00223 * 0.02562 * 19 18 16 21 21 C 1.48150 * 120.00420 * 180.02562 * 19 18 16 22 22 C 1.40033 * 120.86091 * 359.71981 * 21 19 18 23 23 C 1.38150 * 119.26354 * 179.72956 * 22 21 19 24 24 N 1.31713 * 121.06679 * 0.56244 * 23 22 21 25 25 C 1.32815 * 121.89978 * 359.71224 * 24 23 22 26 26 C 1.47661 * 119.69630 * 179.97438 * 25 24 23 27 27 C 1.36031 * 125.93929 * 0.02770 * 26 25 24 28 28 C 1.40831 * 106.73685 * 179.97438 * 27 26 25 29 29 C 1.34804 * 107.04259 * 359.97438 * 28 27 26 30 30 O 1.34232 * 108.68676 * 359.77138 * 29 28 27 31 31 C 1.39468 * 120.86660 * 180.02562 * 21 19 18 32 32 H 0.96995 * 119.99945 * 359.97438 * 1 2 3 33 33 H 1.08992 * 112.26519 * 21.85572 * 10 9 7 34 34 H 1.08999 * 110.21712 * 258.26579 * 10 9 7 35 35 H 1.09002 * 110.40706 * 100.80382 * 15 9 7 36 36 H 1.09001 * 110.41178 * 338.37370 * 15 9 7 37 37 H 0.97005 * 120.00004 * 315.77445 * 18 16 13 38 38 H 1.07999 * 120.36566 * 0.02562 * 22 21 19 39 39 H 1.08005 * 119.46164 * 180.25105 * 23 22 21 40 40 H 1.07999 * 126.62912 * 359.97438 * 27 26 25 41 41 H 1.08004 * 126.47359 * 179.97438 * 28 27 26 42 42 H 1.08000 * 125.65570 * 180.02562 * 29 28 27 43 43 H 1.07999 * 120.56103 * 0.02562 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1793 -2.5892 0.0069 11 6 -0.3713 -3.7836 -0.9523 12 1 -0.9350 -3.6100 -1.8689 13 6 0.9649 -4.5550 -0.9529 14 1 1.3965 -4.9560 -1.8700 15 6 1.8845 -3.7600 -0.0016 16 6 -0.2957 -5.1961 -0.3693 17 1 -0.3528 -5.2960 0.7147 18 7 -0.9194 -6.2773 -1.1363 19 6 -1.3385 -7.3939 -0.5086 20 8 -1.1996 -7.5037 0.6936 21 6 -1.9687 -8.4876 -1.2843 22 6 -2.1431 -8.3778 -2.6694 23 6 -2.7296 -9.4200 -3.3609 24 7 -3.1354 -10.5066 -2.7368 25 6 -2.9971 -10.6552 -1.4243 26 6 -3.4701 -11.8939 -0.7744 27 6 -4.0587 -12.9489 -1.3997 28 6 -4.3442 -13.9028 -0.4037 29 6 -3.9201 -13.3893 0.7683 30 8 -3.3879 -12.1783 0.5398 31 6 -2.4094 -9.6505 -0.6531 32 1 -0.4850 0.8400 0.0004 33 1 -0.7146 -1.7148 -0.3630 34 1 -0.5197 -2.8483 1.0094 35 1 1.8513 -4.1847 1.0018 36 1 2.9071 -3.7537 -0.3789 37 1 -1.0306 -6.1896 -2.0959 38 1 -1.8183 -7.4901 -3.1919 39 1 -2.8619 -9.3404 -4.4299 40 1 -4.2668 -13.0378 -2.4557 41 1 -4.8142 -14.8639 -0.5512 42 1 -3.9924 -13.8738 1.7308 43 1 -2.2981 -9.7720 0.4142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960463887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:54 Heat of formation + Delta-G solvation = 71.746180 kcal Electronic energy + Delta-G solvation = -27131.575415 eV Core-core repulsion = 23145.085697 eV Total energy + Delta-G solvation = -3986.489718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.56163 -41.76769 -40.65524 -39.57139 -36.12579 -34.81953 -34.17118 -33.52789 -33.28099 -31.93962 -29.65170 -28.83859 -27.78450 -26.10970 -24.88550 -23.63985 -22.66660 -22.27653 -22.02818 -21.26792 -20.81202 -19.55483 -18.90434 -18.23124 -17.98543 -17.16190 -16.92951 -16.87671 -16.63026 -16.49147 -16.22162 -15.62506 -15.26790 -15.04075 -14.95143 -14.84961 -14.59389 -13.92846 -13.84424 -13.76085 -13.43540 -13.27415 -13.10398 -13.02916 -12.95737 -12.69896 -12.15889 -12.01152 -11.77308 -11.68011 -11.55540 -11.29057 -11.04070 -10.97508 -10.77056 -10.69958 -10.66731 -9.81653 -9.12875 -8.96952 -7.75964 -5.23317 -0.67460 -0.32945 0.88079 1.48834 1.51634 1.55628 1.58197 1.67716 1.72159 1.77594 2.49785 2.69902 2.87157 3.21706 3.29369 3.34995 3.52490 3.54395 3.76816 3.81559 3.83056 3.88859 4.07236 4.09680 4.13030 4.23246 4.35708 4.49064 4.56330 4.60942 4.74913 4.78435 4.87989 4.90402 4.97997 4.98370 5.07854 5.26472 5.32815 5.41013 5.45541 5.47688 5.53522 5.77476 6.04660 6.25739 6.31460 6.67476 6.95884 7.02325 7.69414 8.43824 9.25388 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.809241 B =15687.357887 C =16069.878796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.232 4.232 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.152 3.848 11 C -0.169 4.169 12 H 0.126 0.874 13 C -0.167 4.167 14 H 0.136 0.864 15 C 0.152 3.848 16 C 0.111 3.889 17 H 0.108 0.892 18 N -0.669 5.669 19 C 0.560 3.440 20 O -0.570 6.570 21 C -0.088 4.088 22 C -0.124 4.124 23 C 0.117 3.883 24 N -0.467 5.467 25 C 0.189 3.811 26 C -0.021 4.021 27 C -0.150 4.150 28 C -0.227 4.227 29 C -0.017 4.017 30 O -0.189 6.189 31 C -0.115 4.115 32 H 0.249 0.751 33 H 0.110 0.890 34 H -0.004 1.004 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.181 0.819 39 H 0.214 0.786 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.245 0.755 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 -26.853 -8.806 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.360 4.360 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.190 4.190 12 H 0.144 0.856 13 C -0.188 4.188 14 H 0.154 0.846 15 C 0.026 3.974 16 C 0.004 3.996 17 H 0.125 0.875 18 N -0.319 5.319 19 C 0.348 3.652 20 O -0.449 6.449 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.041 4.041 24 N -0.178 5.178 25 C 0.054 3.946 26 C -0.071 4.071 27 C -0.170 4.170 28 C -0.246 4.246 29 C -0.085 4.085 30 O -0.085 6.085 31 C -0.136 4.136 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.014 0.986 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.198 0.802 39 H 0.230 0.770 40 H 0.182 0.818 41 H 0.198 0.802 42 H 0.261 0.739 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.059 -27.106 -8.208 29.735 hybrid contribution 0.655 1.609 0.550 1.822 sum -8.404 -25.497 -7.658 27.917 Atomic orbital electron populations 1.69725 1.06204 1.25130 1.58829 1.25596 0.96616 1.00878 1.03014 0.85068 0.77048 0.78577 0.78110 1.20104 1.21944 1.20790 1.19450 0.90964 0.83373 1.42252 0.89800 1.46417 1.02115 1.00464 1.85951 1.22327 0.84857 0.96387 0.93672 1.24336 1.01316 0.90618 1.02702 0.85617 1.24318 0.90115 1.01781 1.02567 0.84581 1.21211 0.96096 0.84404 0.95675 1.21507 0.97310 0.85257 0.95517 0.87465 1.44999 1.59440 1.15412 1.12032 1.18457 0.77730 0.82240 0.86790 1.90788 1.57297 1.80659 1.16191 1.20139 1.00350 0.94097 0.95286 1.22840 0.97533 1.02122 0.91917 1.23441 0.91977 0.86403 1.02266 1.67400 1.16678 1.25730 1.07994 1.18258 0.96395 0.90421 0.89523 1.19852 1.08895 0.96648 0.81715 1.22164 1.00410 0.92565 1.01887 1.22229 1.07489 1.02994 0.91848 1.25145 0.98018 0.82818 1.02541 1.84056 1.64240 1.34740 1.25472 1.22164 0.96910 0.92753 1.01797 0.94106 0.87254 0.98614 0.96117 0.91877 0.74107 0.80188 0.76952 0.81774 0.80181 0.73856 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.49 10.12 21.65 0.22 -55.27 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.98 45.01 29.55 68.60 2.03 47.03 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.23 -12.84 10.42 84.03 0.88 -11.97 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -32.02 3.46 -678.24 -2.35 -34.36 16 10 C 0.15 7.39 6.43 85.80 0.55 7.94 16 11 C -0.17 -6.08 6.96 -9.89 -0.07 -6.15 16 12 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 13 C -0.17 -5.51 7.05 -9.90 -0.07 -5.58 16 14 H 0.14 3.67 8.14 -2.38 -0.02 3.65 16 15 C 0.15 6.26 7.05 86.52 0.61 6.87 16 16 C 0.11 3.55 5.97 44.99 0.27 3.81 16 17 H 0.11 4.09 7.40 -2.39 -0.02 4.07 16 18 N -0.67 -16.00 5.52 -445.13 -2.46 -18.46 16 19 C 0.56 15.51 7.80 86.88 0.68 16.19 16 20 O -0.57 -21.13 16.00 -3.78 -0.06 -21.19 16 21 C -0.09 -1.91 5.90 -19.91 -0.12 -2.02 16 22 C -0.12 -1.61 9.61 22.68 0.22 -1.39 16 23 C 0.12 1.43 11.16 84.69 0.95 2.37 16 24 N -0.47 -8.78 10.02 -185.27 -1.86 -10.64 16 25 C 0.19 4.24 6.75 41.82 0.28 4.53 16 26 C -0.02 -0.47 7.03 24.25 0.17 -0.30 16 27 C -0.15 -2.67 10.58 22.39 0.24 -2.43 16 28 C -0.23 -2.96 10.89 22.12 0.24 -2.72 16 29 C -0.02 -0.23 12.08 67.03 0.81 0.58 16 30 O -0.19 -4.01 10.39 -5.95 -0.06 -4.07 16 31 C -0.12 -2.81 9.32 22.90 0.21 -2.59 16 32 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.11 6.00 5.34 -2.39 -0.01 5.98 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.42 6.56 6.96 -92.70 -0.65 5.91 16 38 H 0.18 0.97 6.52 -2.91 -0.02 0.95 16 39 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.25 0.97 8.06 -2.91 -0.02 0.94 16 43 H 0.13 3.66 7.58 -2.91 -0.02 3.64 16 Total: -1.00 -77.06 369.77 2.19 -74.87 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.42 Total: 18.34 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 6.31 Total: 3.75 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -6.44 Total: -118.73 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.12 Total: -25.27 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -77.06 2.19 -74.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960463887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.618 kcal (2) G-P(sol) polarization free energy of solvation -77.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds