Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47212 * 239.99800 * 3 2 1 5 5 H 1.48497 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47378 * 119.99459 * 3 2 1 7 7 C 1.38809 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99680 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47877 * 126.94144 * 0.02562 * 9 7 2 11 11 C 1.56022 * 105.10059 * 181.98451 * 10 9 7 12 12 H 1.09002 * 116.24483 * 158.83928 * 11 10 9 13 13 C 1.57076 * 99.60872 * 32.80629 * 11 10 9 14 14 C 1.49292 * 126.94952 * 179.97438 * 9 7 2 15 15 H 1.09004 * 116.14751 * 15.86070 * 14 9 7 16 16 C 1.56014 * 104.09364 * 246.71732 * 14 9 7 17 17 N 1.47874 * 105.19097 * 288.71484 * 16 14 9 18 18 C 1.34778 * 126.94183 * 182.03954 * 17 16 14 19 19 O 1.21698 * 119.99263 * 180.02562 * 18 17 16 20 20 C 1.46664 * 120.00007 * 0.02593 * 18 17 16 21 21 C 1.36724 * 125.85425 * 179.97438 * 20 18 17 22 22 C 1.39920 * 106.91118 * 179.97438 * 21 20 18 23 23 C 1.36507 * 107.02050 * 0.02562 * 22 21 20 24 24 C 1.47743 * 125.76254 * 180.02562 * 23 22 21 25 25 C 1.40030 * 120.93335 * 359.71978 * 24 23 22 26 26 C 1.37945 * 118.98167 * 179.73045 * 25 24 23 27 27 N 1.31930 * 120.91336 * 0.55623 * 26 25 24 28 28 C 1.31932 * 122.06995 * 359.71474 * 27 26 25 29 29 C 1.37938 * 120.91452 * 0.02562 * 28 27 26 30 30 O 1.34391 * 108.46980 * 359.73446 * 23 22 21 31 31 H 0.96995 * 120.00002 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.31176 * 300.88827 * 10 9 7 33 33 H 1.08999 * 110.31458 * 62.98082 * 10 9 7 34 34 H 1.09007 * 112.36782 * 191.71038 * 13 11 10 35 35 H 1.09001 * 112.37207 * 64.27518 * 13 11 10 36 36 H 1.09002 * 110.31668 * 47.67269 * 16 14 9 37 37 H 1.09004 * 110.31589 * 169.75796 * 16 14 9 38 38 H 1.08005 * 126.54428 * 359.97438 * 21 20 18 39 39 H 1.07997 * 126.48606 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.50642 * 359.97438 * 25 24 23 41 41 H 1.08006 * 119.54729 * 180.29430 * 26 25 24 42 42 H 1.08003 * 119.54007 * 180.02562 * 28 27 26 43 43 H 1.07995 * 120.50972 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3637 -4.1104 0.0522 12 1 -1.3363 -4.4458 0.4122 13 6 0.8835 -4.5250 0.9124 14 6 1.9104 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2680 16 6 1.5088 -4.3455 -1.3894 17 7 0.0522 -4.5853 -1.3028 18 6 -0.7382 -5.1222 -2.2533 19 8 -1.9293 -5.2622 -2.0463 20 6 -0.1630 -5.5375 -3.5369 21 6 -0.8503 -6.0932 -4.5801 22 6 0.0791 -6.3326 -5.5983 23 6 1.2940 -5.9148 -5.1367 24 6 2.5685 -5.9769 -5.8814 25 6 2.6194 -6.5018 -7.1786 26 6 3.8299 -6.5352 -7.8391 27 7 4.9299 -6.0918 -7.2611 28 6 4.9275 -5.5947 -6.0391 29 6 3.7606 -5.5182 -5.3074 30 8 1.1337 -5.4317 -3.8930 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5819 -2.0913 0.8762 33 1 -0.5733 -2.1521 -0.9117 34 1 1.0486 -5.6025 0.9111 35 1 0.8439 -4.1188 1.9231 36 1 1.7277 -3.6269 -2.1793 37 1 2.0362 -5.2815 -1.5734 38 1 -1.9085 -6.3067 -4.6121 39 1 -0.1259 -6.7658 -6.5661 40 1 1.7238 -6.8712 -7.6561 41 1 3.8788 -6.9338 -8.8418 42 1 5.8520 -5.2428 -5.6055 43 1 3.7662 -5.1104 -4.3074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032444123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = 85.094585 kcal Electronic energy + Delta-G solvation = -29009.277479 eV Core-core repulsion = 25023.366591 eV Total energy + Delta-G solvation = -3985.910888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.80509 -40.25552 -39.98397 -37.89702 -34.10505 -33.64139 -33.01493 -31.69911 -31.51729 -29.63628 -28.81505 -28.51363 -25.35094 -24.89237 -23.97539 -23.47829 -22.06844 -21.43082 -20.51248 -19.92161 -19.09930 -18.07029 -17.49269 -16.53574 -16.47307 -16.36810 -16.05837 -15.88445 -15.18306 -14.71457 -14.47868 -14.11314 -14.07248 -14.01190 -13.50803 -13.37303 -13.21283 -13.13863 -12.89995 -12.20803 -12.01056 -11.89335 -11.73676 -11.38802 -11.10551 -10.92530 -10.82544 -10.81744 -10.67426 -10.33637 -10.15884 -10.08484 -10.00561 -9.84290 -9.68086 -9.50873 -8.76161 -8.46947 -8.09403 -6.98731 -5.81274 -3.16140 0.22222 0.81819 1.41901 2.34796 2.39873 3.18622 3.35082 3.36838 3.39396 3.41443 3.56400 4.10056 4.15297 4.38010 4.44987 4.64129 4.69636 4.72893 4.82928 5.01946 5.11082 5.23643 5.27802 5.33000 5.45818 5.47575 5.51357 5.56377 5.56888 5.68101 5.79071 5.82223 5.88779 6.10224 6.18435 6.20239 6.31126 6.31931 6.38224 6.51767 6.58757 6.78382 7.35627 7.40591 7.64366 7.65864 7.84469 8.04769 8.27772 9.05213 9.66279 10.34484 11.30946 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.003574 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.796528 B = 7833.336641 C = 9435.425077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.118 0.882 13 C -0.151 4.151 14 C 0.141 3.859 15 H 0.109 0.891 16 C 0.085 3.915 17 N -0.592 5.592 18 C 0.608 3.392 19 O -0.532 6.532 20 C -0.036 4.036 21 C -0.135 4.135 22 C -0.183 4.183 23 C 0.031 3.969 24 C 0.031 3.969 25 C -0.154 4.154 26 C 0.103 3.897 27 N -0.485 5.485 28 C 0.106 3.894 29 C -0.153 4.153 30 O -0.144 6.144 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 -15.256 -10.592 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.136 0.864 13 C -0.190 4.190 14 C 0.032 3.968 15 H 0.127 0.873 16 C -0.040 4.040 17 N -0.324 5.324 18 C 0.395 3.605 19 O -0.412 6.412 20 C -0.089 4.089 21 C -0.155 4.155 22 C -0.202 4.202 23 C -0.021 4.021 24 C 0.023 3.977 25 C -0.174 4.174 26 C -0.054 4.054 27 N -0.194 5.194 28 C -0.050 4.050 29 C -0.173 4.173 30 O -0.039 6.039 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.175 -14.945 -10.792 19.147 hybrid contribution -0.575 0.980 0.179 1.150 sum 4.600 -13.965 -10.613 18.133 Atomic orbital electron populations 1.69892 1.04968 1.25536 1.56194 1.24820 0.95687 0.97747 1.01866 0.86190 0.78468 0.83102 0.77914 1.21150 1.21580 1.21035 1.18994 0.90391 0.82016 1.44771 0.90146 1.45245 1.01279 0.99311 1.86272 1.21952 0.84839 0.86794 1.01576 1.24484 0.98157 0.97901 0.79774 0.86400 1.24176 0.96483 0.99057 0.99314 1.23207 0.96687 0.86288 0.90570 0.87347 1.23407 0.79100 0.99303 1.02199 1.49178 1.09961 1.57973 1.15278 1.16137 0.85256 0.78451 0.80622 1.90856 1.13688 1.57844 1.78825 1.22449 0.81053 1.07534 0.97855 1.21833 1.01389 1.00697 0.91585 1.21736 0.91098 1.05956 1.01439 1.20488 0.94505 1.02637 0.84501 1.18087 0.89443 0.97264 0.92916 1.22087 1.00472 1.01067 0.93731 1.22684 0.87307 0.95565 0.99810 1.67653 1.30932 1.09523 1.11321 1.22760 0.97956 0.94538 0.89775 1.22405 0.92557 1.00112 1.02212 1.84206 1.27931 1.63316 1.28473 0.93459 0.92232 0.93358 0.91502 0.89415 0.90747 0.92536 0.81813 0.82365 0.84114 0.82145 0.82042 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.56 55.49 0.59 -25.89 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.12 10.37 -15.06 -0.16 -6.28 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.09 3.02 -156.31 -0.47 -14.56 16 10 C 0.17 4.08 4.77 -1.67 -0.01 4.08 16 11 C 0.10 1.87 5.24 -62.44 -0.33 1.54 16 12 H 0.12 2.12 8.09 -51.93 -0.42 1.70 16 13 C -0.15 -2.47 6.81 -22.29 -0.15 -2.62 16 14 C 0.14 2.57 5.53 -62.53 -0.35 2.22 16 15 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.09 1.48 4.98 -1.68 -0.01 1.47 16 17 N -0.59 -11.07 2.96 -158.15 -0.47 -11.54 16 18 C 0.61 11.50 7.87 -12.86 -0.10 11.40 16 19 O -0.53 -11.17 17.24 5.19 0.09 -11.08 16 20 C -0.04 -0.58 6.97 -36.73 -0.26 -0.83 16 21 C -0.13 -1.83 10.59 -39.50 -0.42 -2.25 16 22 C -0.18 -2.07 10.26 -39.58 -0.41 -2.47 16 23 C 0.03 0.39 7.05 -36.32 -0.26 0.13 16 24 C 0.03 0.34 5.91 -104.66 -0.62 -0.28 16 25 C -0.15 -1.32 9.64 -39.02 -0.38 -1.70 16 26 C 0.10 0.88 11.17 -17.62 -0.20 0.68 16 27 N -0.49 -5.11 10.34 -13.36 -0.14 -5.25 16 28 C 0.11 1.04 11.17 -17.62 -0.20 0.84 16 29 C -0.15 -1.62 9.82 -39.02 -0.38 -2.01 16 30 O -0.14 -2.18 8.34 3.85 0.03 -2.14 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.53 7.46 -51.93 -0.39 1.15 16 33 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 34 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.07 1.45 7.94 -51.93 -0.41 1.04 16 37 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 38 H 0.16 2.00 8.06 -52.48 -0.42 1.57 16 39 H 0.16 1.23 7.33 -52.49 -0.38 0.84 16 40 H 0.14 0.83 7.11 -52.49 -0.37 0.46 16 41 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.14 1.48 7.99 -52.49 -0.42 1.06 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.53 363.05 -9.51 -42.03 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.28 Total: 2.78 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -4.30 Total: 3.71 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.49 Total: -57.24 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.12 Total: -13.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.53 -9.51 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032444123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.129 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds