Wall clock time and date at job start Tue Mar 31 2020 22:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99830 * 2 1 4 4 H 1.48497 * 109.47212 * 239.99800 * 3 2 1 5 5 H 1.48497 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47378 * 119.99459 * 3 2 1 7 7 C 1.38809 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99680 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47877 * 126.94144 * 0.02562 * 9 7 2 11 11 C 1.56022 * 105.10059 * 181.98451 * 10 9 7 12 12 H 1.09002 * 116.24483 * 158.83928 * 11 10 9 13 13 C 1.57076 * 99.60872 * 32.80629 * 11 10 9 14 14 C 1.49292 * 126.94952 * 179.97438 * 9 7 2 15 15 H 1.09004 * 116.14751 * 15.86070 * 14 9 7 16 16 C 1.56014 * 104.09364 * 246.71732 * 14 9 7 17 17 N 1.47874 * 105.19097 * 288.71484 * 16 14 9 18 18 C 1.34778 * 126.94183 * 182.03954 * 17 16 14 19 19 O 1.21698 * 119.99263 * 180.02562 * 18 17 16 20 20 C 1.46664 * 120.00007 * 0.02593 * 18 17 16 21 21 C 1.36724 * 125.85425 * 179.97438 * 20 18 17 22 22 C 1.39920 * 106.91118 * 179.97438 * 21 20 18 23 23 C 1.36507 * 107.02050 * 0.02562 * 22 21 20 24 24 C 1.47743 * 125.76254 * 180.02562 * 23 22 21 25 25 C 1.40030 * 120.93335 * 359.71978 * 24 23 22 26 26 C 1.37945 * 118.98167 * 179.73045 * 25 24 23 27 27 N 1.31930 * 120.91336 * 0.55623 * 26 25 24 28 28 C 1.31932 * 122.06995 * 359.71474 * 27 26 25 29 29 C 1.37938 * 120.91452 * 0.02562 * 28 27 26 30 30 O 1.34391 * 108.46980 * 359.73446 * 23 22 21 31 31 H 0.96995 * 120.00002 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.31176 * 300.88827 * 10 9 7 33 33 H 1.08999 * 110.31458 * 62.98082 * 10 9 7 34 34 H 1.09007 * 112.36782 * 191.71038 * 13 11 10 35 35 H 1.09001 * 112.37207 * 64.27518 * 13 11 10 36 36 H 1.09002 * 110.31668 * 47.67269 * 16 14 9 37 37 H 1.09004 * 110.31589 * 169.75796 * 16 14 9 38 38 H 1.08005 * 126.54428 * 359.97438 * 21 20 18 39 39 H 1.07997 * 126.48606 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.50642 * 359.97438 * 25 24 23 41 41 H 1.08006 * 119.54729 * 180.29430 * 26 25 24 42 42 H 1.08003 * 119.54007 * 180.02562 * 28 27 26 43 43 H 1.07995 * 120.50972 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3637 -4.1104 0.0522 12 1 -1.3363 -4.4458 0.4122 13 6 0.8835 -4.5250 0.9124 14 6 1.9104 -3.7617 0.0005 15 1 2.9645 -3.8351 0.2680 16 6 1.5088 -4.3455 -1.3894 17 7 0.0522 -4.5853 -1.3028 18 6 -0.7382 -5.1222 -2.2533 19 8 -1.9293 -5.2622 -2.0463 20 6 -0.1630 -5.5375 -3.5369 21 6 -0.8503 -6.0932 -4.5801 22 6 0.0791 -6.3326 -5.5983 23 6 1.2940 -5.9148 -5.1367 24 6 2.5685 -5.9769 -5.8814 25 6 2.6194 -6.5018 -7.1786 26 6 3.8299 -6.5352 -7.8391 27 7 4.9299 -6.0918 -7.2611 28 6 4.9275 -5.5947 -6.0391 29 6 3.7606 -5.5182 -5.3074 30 8 1.1337 -5.4317 -3.8930 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5819 -2.0913 0.8762 33 1 -0.5733 -2.1521 -0.9117 34 1 1.0486 -5.6025 0.9111 35 1 0.8439 -4.1188 1.9231 36 1 1.7277 -3.6269 -2.1793 37 1 2.0362 -5.2815 -1.5734 38 1 -1.9085 -6.3067 -4.6121 39 1 -0.1259 -6.7658 -6.5661 40 1 1.7238 -6.8712 -7.6561 41 1 3.8788 -6.9338 -8.8418 42 1 5.8520 -5.2428 -5.6055 43 1 3.7662 -5.1104 -4.3074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032444123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:58 Heat of formation + Delta-G solvation = 65.429169 kcal Electronic energy + Delta-G solvation = -29010.130235 eV Core-core repulsion = 25023.366591 eV Total energy + Delta-G solvation = -3986.763644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.85377 -41.57686 -40.91364 -39.41896 -35.58726 -34.85114 -33.99357 -33.40825 -32.22121 -31.13726 -30.36175 -29.87694 -27.03977 -26.14527 -24.98147 -24.65960 -23.27289 -22.41715 -21.79075 -21.43661 -20.55365 -19.43760 -18.67309 -18.09363 -17.71442 -17.46890 -17.09291 -16.79639 -16.69450 -16.14432 -15.86843 -15.47317 -15.11302 -14.92733 -14.76370 -14.70047 -14.43695 -14.10800 -13.89678 -13.72754 -13.60071 -13.44152 -13.15159 -12.89124 -12.70172 -12.59883 -12.38196 -12.22234 -12.13102 -11.94724 -11.67771 -11.57172 -11.48292 -11.09265 -10.76616 -10.57438 -10.18805 -9.79155 -9.31490 -8.94907 -7.86794 -5.22749 -0.69560 0.13621 0.36962 1.30435 1.43080 1.45564 1.48298 1.54402 1.84637 2.02283 2.46687 2.84436 3.10393 3.29709 3.34750 3.51076 3.54880 3.71419 3.75751 3.81028 3.92069 3.95174 3.98248 4.11395 4.15062 4.41339 4.44018 4.47612 4.58286 4.59564 4.67516 4.77449 4.84091 4.85884 4.94587 4.96910 5.06812 5.06986 5.19121 5.28546 5.40757 5.44576 5.61969 5.64159 5.75435 6.07001 6.39625 6.83187 6.94920 7.00365 7.68056 8.38082 9.24377 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010608 B = 0.003574 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.796528 B = 7833.336641 C = 9435.425077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.095 0.905 9 N -0.616 5.616 10 C 0.186 3.814 11 C 0.102 3.898 12 H 0.125 0.875 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.138 0.862 16 C 0.098 3.902 17 N -0.599 5.599 18 C 0.604 3.396 19 O -0.565 6.565 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.175 4.175 23 C 0.035 3.965 24 C 0.008 3.992 25 C -0.141 4.141 26 C 0.101 3.899 27 N -0.504 5.504 28 C 0.099 3.901 29 C -0.165 4.165 30 O -0.159 6.159 31 H 0.244 0.756 32 H 0.026 0.974 33 H -0.005 1.005 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.173 0.827 41 H 0.194 0.806 42 H 0.179 0.821 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -17.709 -12.415 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.362 4.362 8 H 0.113 0.887 9 N -0.341 5.341 10 C 0.060 3.940 11 C 0.000 4.000 12 H 0.143 0.857 13 C -0.166 4.166 14 C 0.030 3.970 15 H 0.156 0.844 16 C -0.026 4.026 17 N -0.330 5.330 18 C 0.393 3.607 19 O -0.447 6.447 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.017 4.017 24 C 0.000 4.000 25 C -0.161 4.161 26 C -0.055 4.055 27 N -0.214 5.214 28 C -0.056 4.056 29 C -0.185 4.185 30 O -0.055 6.055 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.192 0.808 39 H 0.218 0.782 40 H 0.191 0.809 41 H 0.211 0.789 42 H 0.196 0.804 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.263 -17.441 -12.611 22.715 hybrid contribution -1.122 1.656 0.578 2.082 sum 6.141 -15.785 -12.033 20.777 Atomic orbital electron populations 1.70140 1.06582 1.25293 1.58550 1.25656 0.96404 1.01162 1.02957 0.85169 0.77038 0.78881 0.78355 1.20478 1.22875 1.19707 1.19492 0.91268 0.83078 1.42324 0.88692 1.45497 1.01482 1.01015 1.86090 1.21548 0.85005 0.89939 0.97473 1.24355 1.00056 0.94357 0.81257 0.85711 1.24078 0.93328 1.00884 0.98289 1.23624 0.98510 0.83415 0.91432 0.84427 1.23208 0.78716 1.00049 1.00631 1.49233 1.10505 1.58070 1.15212 1.16500 0.84968 0.77795 0.81387 1.90813 1.14898 1.59295 1.79741 1.22011 0.82186 1.11242 0.97782 1.22161 1.02177 0.98497 0.91201 1.22148 0.89551 1.05293 1.02388 1.21051 0.95848 1.01176 0.83618 1.18287 0.88728 0.98929 0.94069 1.22440 1.01785 0.99407 0.92432 1.23288 0.86697 0.94567 1.00974 1.67705 1.32153 1.09971 1.11574 1.23025 0.98393 0.94467 0.89750 1.22475 0.93111 1.00598 1.02320 1.84150 1.27378 1.64101 1.29874 0.94644 0.95589 0.98640 0.87850 0.89248 0.93470 0.89238 0.80777 0.78204 0.80916 0.78877 0.80394 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.26 10.56 21.65 0.23 -58.04 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.23 -12.36 10.37 84.03 0.87 -11.49 16 8 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 9 N -0.62 -29.69 3.02 -648.45 -1.96 -31.65 16 10 C 0.19 9.29 4.77 87.16 0.42 9.71 16 11 C 0.10 3.94 5.24 46.89 0.25 4.19 16 12 H 0.13 4.61 8.09 -2.39 -0.02 4.59 16 13 C -0.13 -3.93 6.81 33.47 0.23 -3.70 16 14 C 0.14 4.78 5.53 46.94 0.26 5.04 16 15 H 0.14 4.01 8.14 -2.39 -0.02 4.00 16 16 C 0.10 3.36 4.98 87.16 0.43 3.79 16 17 N -0.60 -22.70 2.96 -772.50 -2.29 -24.98 16 18 C 0.60 23.36 7.87 86.44 0.68 24.04 16 19 O -0.56 -24.48 17.24 -4.34 -0.07 -24.56 16 20 C -0.08 -2.58 6.97 24.12 0.17 -2.41 16 21 C -0.12 -3.08 10.59 22.32 0.24 -2.85 16 22 C -0.17 -3.42 10.26 22.27 0.23 -3.19 16 23 C 0.03 0.82 7.05 24.38 0.17 0.99 16 24 C 0.01 0.16 5.91 -19.89 -0.12 0.04 16 25 C -0.14 -1.90 9.64 22.64 0.22 -1.68 16 26 C 0.10 1.37 11.17 84.61 0.94 2.31 16 27 N -0.50 -9.41 10.34 -196.17 -2.03 -11.44 16 28 C 0.10 1.79 11.17 84.61 0.94 2.73 16 29 C -0.17 -3.30 9.82 22.64 0.22 -3.08 16 30 O -0.16 -4.71 8.34 -9.13 -0.08 -4.78 16 31 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.03 1.44 7.46 -2.39 -0.02 1.43 16 33 H 0.00 -0.27 7.67 -2.39 -0.02 -0.29 16 34 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.05 1.88 7.94 -2.39 -0.02 1.86 16 37 H 0.09 2.49 7.75 -2.39 -0.02 2.47 16 38 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.20 2.07 7.33 -2.91 -0.02 2.05 16 40 H 0.17 1.12 7.11 -2.91 -0.02 1.10 16 41 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.14 2.81 7.99 -2.91 -0.02 2.79 16 Total: -1.00 -75.94 363.05 3.49 -72.45 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.04 Total: 14.68 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 6.62 Total: 21.04 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.04 Total: -126.10 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.15 Total: -29.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.94 3.49 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032444123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.878 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds