Wall clock time and date at job start Tue Mar 31 2020 23:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99655 * 2 1 4 4 C 1.50705 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.30934 * 122.90630 * 270.19249 * 4 3 2 6 6 C 1.29426 * 117.36406 * 180.34271 * 5 4 3 7 7 S 1.70950 * 110.39061 * 359.71572 * 6 5 4 8 8 C 1.35666 * 122.90083 * 90.00204 * 4 3 2 9 9 C 1.46686 * 126.12891 * 359.96012 * 8 4 3 10 10 O 1.21689 * 120.00281 * 359.72423 * 9 8 4 11 11 N 1.34771 * 119.99646 * 179.71354 * 9 8 4 12 12 C 1.46506 * 120.00090 * 179.72342 * 11 9 8 13 13 C 1.53007 * 109.45495 * 60.28134 * 12 11 9 14 14 C 1.53040 * 109.45893 * 300.31075 * 12 11 9 15 15 C 1.53157 * 109.32684 * 301.34983 * 14 12 11 16 16 N 1.46927 * 108.77338 * 305.35948 * 15 14 12 17 17 C 1.36934 * 120.63103 * 233.63004 * 16 15 14 18 18 H 1.07999 * 119.99418 * 151.80894 * 17 16 15 19 19 C 1.38813 * 120.00241 * 331.81062 * 17 16 15 20 20 N 1.31620 * 119.99745 * 343.08183 * 19 17 16 21 21 Si 1.86794 * 120.00018 * 163.08547 * 19 17 16 22 22 H 1.48495 * 109.47379 * 89.99803 * 21 19 17 23 23 H 1.48506 * 109.47058 * 209.99772 * 21 19 17 24 24 H 1.48500 * 109.47178 * 329.99625 * 21 19 17 25 25 C 1.46926 * 118.73625 * 53.60601 * 16 15 14 26 26 C 1.53041 * 109.46043 * 180.25023 * 12 11 9 27 27 H 1.08992 * 109.47034 * 299.99809 * 1 2 3 28 28 H 1.09003 * 109.46826 * 60.00087 * 1 2 3 29 29 H 1.08999 * 109.46338 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47416 * 60.00125 * 3 2 1 31 31 H 1.09000 * 109.47334 * 300.00084 * 3 2 1 32 32 H 1.08004 * 124.81088 * 179.73202 * 6 5 4 33 33 H 0.96999 * 120.00650 * 0.02562 * 11 9 8 34 34 H 1.09000 * 109.47261 * 59.99932 * 13 12 11 35 35 H 1.08997 * 109.46943 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.46952 * 300.00303 * 13 12 11 37 37 H 1.08993 * 109.49797 * 61.29639 * 14 12 11 38 38 H 1.09002 * 109.49567 * 181.38762 * 14 12 11 39 39 H 1.08999 * 109.59119 * 185.56969 * 15 14 12 40 40 H 1.09003 * 109.70795 * 65.21536 * 15 14 12 41 41 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58731 * 186.60535 * 25 16 15 43 43 H 1.09003 * 109.70327 * 66.24819 * 25 16 15 44 44 H 1.09000 * 109.49220 * 178.60768 * 26 12 11 45 45 H 1.08997 * 109.49784 * 298.67538 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2209 1.1270 1.1002 6 6 5.5057 1.0327 0.9758 7 16 5.9435 1.0030 -0.6764 8 6 4.2476 1.1283 -1.1381 9 6 3.7248 1.1687 -2.5080 10 8 2.5264 1.2577 -2.6996 11 7 4.5718 1.1075 -3.5546 12 6 4.0493 1.1417 -4.9228 13 6 3.2888 2.4507 -5.1454 14 6 3.1019 -0.0410 -5.1365 15 6 3.8572 -1.3483 -4.8794 16 7 5.0571 -1.3758 -5.7269 17 6 5.3002 -2.4368 -6.5577 18 1 5.8681 -2.2930 -7.4650 19 6 4.8169 -3.6971 -6.2338 20 7 4.4251 -3.9556 -5.0041 21 14 4.7226 -5.0261 -7.5430 22 1 5.9947 -5.7919 -7.5635 23 1 3.5968 -5.9446 -7.2357 24 1 4.5011 -4.3985 -8.8705 25 6 5.9907 -0.2429 -5.6665 26 6 5.2113 1.0523 -5.9148 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.2027 0.9799 1.7991 33 1 5.5271 1.0364 -3.4020 34 1 3.9633 3.2932 -4.9927 35 1 2.8996 2.4762 -6.1631 36 1 2.4615 2.5149 -4.4386 37 1 2.2624 0.0358 -4.4456 38 1 2.7319 -0.0302 -6.1618 39 1 3.2165 -2.1951 -5.1255 40 1 4.1493 -1.4039 -3.8307 41 1 4.0876 -4.8363 -4.7776 42 1 6.7577 -0.3603 -6.4320 43 1 6.4589 -0.2047 -4.6829 44 1 4.8214 1.0528 -6.9327 45 1 5.8730 1.9076 -5.7781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045580806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:32 Heat of formation + Delta-G solvation = -2.975028 kcal Electronic energy + Delta-G solvation = -28754.151923 eV Core-core repulsion = 24899.866002 eV Total energy + Delta-G solvation = -3854.285922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56800 -39.61302 -37.45489 -37.22954 -34.43526 -32.27444 -31.43341 -30.68095 -29.90614 -27.96346 -27.44256 -26.12804 -24.57223 -24.10619 -22.49727 -22.21578 -20.76801 -19.46296 -18.97137 -18.35446 -17.10302 -16.56676 -16.45525 -15.65314 -15.33201 -15.04267 -14.88987 -14.79587 -14.47915 -14.09520 -13.81705 -13.72722 -13.41193 -13.28277 -13.06358 -12.93378 -12.38314 -12.32347 -11.86731 -11.63576 -11.53799 -11.41481 -11.23561 -11.16539 -10.94752 -10.70285 -10.41577 -10.25473 -10.09174 -9.94488 -9.80583 -9.60483 -9.58522 -9.51291 -9.12993 -9.08527 -8.65624 -8.43973 -6.64736 -5.76181 -3.19794 0.16295 1.08893 1.46216 2.32558 3.20247 3.38016 3.38979 3.45783 3.47688 3.86163 4.31525 4.50824 4.83281 4.88245 5.01826 5.26707 5.32365 5.34923 5.40332 5.45010 5.50350 5.52822 5.58754 5.64494 5.77744 5.90897 5.93794 5.99550 6.09529 6.17528 6.33751 6.42128 6.48892 6.64665 6.71696 6.78159 6.90715 7.03997 7.21573 7.42762 7.46708 7.72228 7.76311 7.82298 8.38532 8.46989 9.23089 9.86530 10.43211 11.31642 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.003900 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.382974 B = 7178.384754 C = 7483.254774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.376 6.376 3 C 0.131 3.869 4 C 0.131 3.869 5 N -0.463 5.463 6 C 0.025 3.975 7 S 0.177 5.823 8 C -0.259 4.259 9 C 0.598 3.402 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.185 3.815 13 C -0.160 4.160 14 C -0.151 4.151 15 C 0.178 3.822 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.145 3.855 26 C -0.138 4.138 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.206 0.794 33 H 0.395 0.605 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.077 0.923 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 14.674 9.447 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.053 3.947 4 C -0.008 4.008 5 N -0.177 5.177 6 C -0.271 4.271 7 S 0.432 5.568 8 C -0.383 4.383 9 C 0.383 3.617 10 O -0.394 6.394 11 N -0.352 5.352 12 C 0.100 3.900 13 C -0.218 4.218 14 C -0.191 4.191 15 C 0.052 3.948 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.018 3.982 26 C -0.178 4.178 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.229 0.771 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.096 0.904 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.299 14.330 9.371 17.125 hybrid contribution -0.420 -0.663 -0.309 0.844 sum -0.121 13.667 9.062 16.399 Atomic orbital electron populations 1.22708 0.80615 1.02834 0.99823 1.87944 1.19832 1.26235 1.95431 1.20984 0.85178 0.86354 1.02234 1.20204 0.97165 0.98129 0.85274 1.66001 1.04983 1.15504 1.31201 1.28637 0.95198 1.02751 1.00507 1.84031 1.05529 1.64037 1.03183 1.25798 0.96510 1.16359 0.99680 1.16540 0.86276 0.76867 0.82056 1.90711 1.14326 1.49881 1.84465 1.46018 1.09491 1.73663 1.06046 1.20349 0.94638 0.95655 0.79372 1.22231 1.01105 0.96066 1.02411 1.22586 0.98588 0.96452 1.01483 1.20673 0.87919 0.93618 0.92580 1.44053 1.20423 1.18270 1.48514 1.19139 1.33344 0.86345 0.99726 0.91790 1.25045 1.01782 0.96942 0.95672 1.70039 1.46626 1.21270 1.16353 0.86340 0.77352 0.81798 0.81517 1.21441 1.21584 1.20493 1.20859 0.92160 0.87286 0.97889 1.22350 0.96837 0.99475 0.99090 0.94435 0.93571 0.89575 0.92242 0.88937 0.77731 0.77061 0.93427 0.92012 0.90762 0.90888 0.92023 0.89751 0.96614 0.93630 0.92511 0.97086 0.90440 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.24 10.69 -35.23 -0.38 -6.61 16 3 C 0.13 1.94 5.74 36.01 0.21 2.15 16 4 C 0.13 2.01 6.42 -83.89 -0.54 1.47 16 5 N -0.46 -6.51 10.50 -11.53 -0.12 -6.63 16 6 C 0.02 0.26 12.22 51.75 0.63 0.90 16 7 S 0.18 2.01 22.35 -107.50 -2.40 -0.39 16 8 C -0.26 -3.94 6.48 -37.09 -0.24 -4.18 16 9 C 0.60 10.13 7.20 -12.85 -0.09 10.04 16 10 O -0.52 -9.60 10.49 5.20 0.05 -9.55 16 11 N -0.70 -11.26 4.10 -48.85 -0.20 -11.46 16 12 C 0.18 3.08 0.66 -131.77 -0.09 2.99 16 13 C -0.16 -2.33 8.40 37.16 0.31 -2.02 16 14 C -0.15 -3.06 4.66 -26.63 -0.12 -3.18 16 15 C 0.18 4.34 5.04 -3.73 -0.02 4.33 16 16 N -0.59 -14.47 2.99 -172.34 -0.52 -14.99 16 17 C -0.26 -6.95 9.58 -15.06 -0.14 -7.10 16 18 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 19 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 20 N -0.90 -26.45 11.20 55.49 0.62 -25.83 16 21 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.15 2.85 6.24 -3.71 -0.02 2.83 16 26 C -0.14 -2.22 4.96 -26.61 -0.13 -2.35 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.39 6.02 -51.93 -0.31 1.08 16 32 H 0.21 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.39 5.81 6.45 -40.82 -0.26 5.54 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 37 H 0.07 1.53 6.19 -51.93 -0.32 1.21 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 2.36 6.06 -51.93 -0.31 2.05 16 40 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -33.01 367.79 -8.13 -41.14 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.48 Total: 4.56 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 0.78 Total: 7.48 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.22 Total: -58.90 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.32 Total: -16.16 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.40 Total: -0.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.01 -8.13 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045580806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.167 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds