Wall clock time and date at job start Tue Mar 31 2020 22:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46652 * 299.99437 * 3 2 1 6 6 H 1.48498 * 109.47306 * 59.99319 * 3 2 1 7 7 C 1.38812 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00254 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46635 * 126.55998 * 359.97438 * 9 7 2 11 11 C 1.50781 * 107.69778 * 180.02562 * 10 9 7 12 12 C 1.38445 * 131.20165 * 179.97438 * 11 10 9 13 13 C 1.38155 * 120.10282 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.95857 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.01649 * 179.97438 * 14 13 12 16 16 N 1.46509 * 109.46998 * 90.00058 * 15 14 13 17 17 C 1.34776 * 119.99822 * 180.02562 * 16 15 14 18 18 O 1.21515 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.48153 * 119.99826 * 180.02562 * 17 16 15 20 20 C 1.39163 * 119.69225 * 179.97438 * 19 17 16 21 21 C 1.38744 * 119.18695 * 180.02562 * 20 19 17 22 22 C 1.38367 * 118.55965 * 0.02562 * 21 20 19 23 23 C 1.39247 * 119.30591 * 359.97438 * 22 21 20 24 24 O 1.35668 * 119.61524 * 179.97438 * 23 22 21 25 25 N 1.31927 * 120.76821 * 0.25073 * 23 22 21 26 26 C 1.38140 * 119.96498 * 0.27679 * 14 13 12 27 27 C 1.38067 * 108.86117 * 359.97438 * 11 10 9 28 28 C 1.46633 * 126.56462 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.81468 * 60.45703 * 10 9 7 31 31 H 1.08998 * 109.81446 * 299.54657 * 10 9 7 32 32 H 1.08004 * 119.95417 * 0.02562 * 12 11 10 33 33 H 1.07995 * 120.01630 * 179.97438 * 13 12 11 34 34 H 1.08995 * 109.47126 * 330.00203 * 15 14 13 35 35 H 1.08996 * 109.47108 * 209.99994 * 15 14 13 36 36 H 0.97001 * 119.99688 * 0.02562 * 16 15 14 37 37 H 1.07996 * 120.40700 * 0.04657 * 20 19 17 38 38 H 1.07995 * 120.71753 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.34564 * 180.02562 * 22 21 20 40 40 H 0.96700 * 114.00436 * 89.99853 * 24 23 22 41 41 H 1.08002 * 119.95007 * 179.72651 * 26 14 13 42 42 H 1.08997 * 109.81093 * 60.44910 * 28 9 7 43 43 H 1.09007 * 109.81059 * 299.54602 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1312 -2.5556 0.0005 11 6 -0.4225 -4.0351 0.0012 12 6 -1.6207 -4.7286 0.0019 13 6 -1.6216 -6.1102 0.0029 14 6 -0.4243 -6.8013 0.0027 15 6 -0.4238 -8.3084 0.0044 16 7 -0.4247 -8.7982 -1.3763 17 6 -0.4250 -10.1236 -1.6211 18 8 -0.4239 -10.9122 -0.6966 19 6 -0.4254 -10.6190 -3.0174 20 6 -0.4251 -11.9888 -3.2628 21 6 -0.4250 -12.4412 -4.5744 22 6 -0.4245 -11.5080 -5.5960 23 6 -0.4248 -10.1518 -5.2803 24 8 -0.4239 -9.2314 -6.2770 25 7 -0.4205 -9.7515 -4.0232 26 6 0.7716 -6.1099 0.0072 27 6 0.7732 -4.7253 0.0010 28 6 1.9087 -3.7335 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5561 -2.0955 -0.8916 31 1 -0.5561 -2.0955 0.8926 32 1 -2.5562 -4.1889 0.0016 33 1 -2.5570 -6.6498 0.0039 34 1 -1.3132 -8.6714 0.5193 35 1 0.4668 -8.6708 0.5179 36 1 -0.4252 -8.1687 -2.1143 37 1 -0.4254 -12.6911 -2.4423 38 1 -0.4243 -13.4988 -4.7932 39 1 -0.4248 -11.8281 -6.6274 40 1 -1.3070 -8.9645 -6.5668 41 1 1.7068 -6.6501 0.0115 42 1 2.5197 -3.8712 0.8926 43 1 2.5197 -3.8713 -0.8917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054260103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:34 Heat of formation + Delta-G solvation = 24.344123 kcal Electronic energy + Delta-G solvation = -27296.419463 eV Core-core repulsion = 23307.874238 eV Total energy + Delta-G solvation = -3988.545226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13766 -39.85810 -39.25330 -37.35974 -36.36838 -34.63170 -33.17497 -32.21969 -31.23703 -30.80787 -29.70568 -27.59476 -26.12196 -25.25526 -24.10546 -23.58714 -22.02916 -21.09596 -20.41940 -20.16989 -19.16960 -18.16095 -17.02022 -16.95667 -16.53075 -15.93683 -15.84507 -15.52239 -15.42305 -14.74660 -14.63296 -14.31516 -14.22571 -14.10406 -13.69477 -13.49622 -13.15479 -13.00897 -12.69206 -12.42238 -12.21799 -11.94885 -11.84223 -11.66607 -11.54897 -11.08275 -10.87374 -10.74954 -10.49710 -10.47008 -10.21021 -10.11807 -9.87531 -9.80395 -9.50116 -9.18884 -8.96132 -8.40577 -8.02045 -6.85716 -5.82215 -3.15381 0.15279 0.62978 1.57423 1.75952 2.35808 2.88246 3.13416 3.36881 3.41328 3.42125 3.44917 4.02136 4.15904 4.40447 4.40586 4.46211 4.53451 4.71693 4.92181 4.97885 4.99878 5.25074 5.32213 5.41372 5.42808 5.49597 5.55618 5.58708 5.65209 5.86716 5.90287 6.03122 6.11540 6.21209 6.50606 6.55027 6.56322 6.77210 6.79434 6.96384 7.05960 7.16715 7.32820 7.35625 7.43775 7.52903 7.68789 7.94180 8.12657 9.10845 9.70674 10.37783 11.32025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.002132 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.311822 B =13128.647594 C =14006.823917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.225 4.225 8 H 0.084 0.916 9 N -0.601 5.601 10 C 0.205 3.795 11 C -0.080 4.080 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.133 4.133 15 C 0.168 3.832 16 N -0.700 5.700 17 C 0.568 3.432 18 O -0.535 6.535 19 C 0.106 3.894 20 C -0.123 4.123 21 C -0.066 4.066 22 C -0.165 4.165 23 C 0.312 3.688 24 O -0.478 6.478 25 N -0.477 5.477 26 C -0.082 4.082 27 C -0.106 4.106 28 C 0.175 3.825 29 H 0.254 0.746 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.404 0.596 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 -24.752 -9.401 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.352 4.352 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.081 3.919 11 C -0.081 4.081 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.134 4.134 15 C 0.046 3.954 16 N -0.351 5.351 17 C 0.352 3.648 18 O -0.411 6.411 19 C -0.032 4.032 20 C -0.144 4.144 21 C -0.091 4.091 22 C -0.186 4.186 23 C 0.131 3.869 24 O -0.286 6.286 25 N -0.199 5.199 26 C -0.101 4.101 27 C -0.107 4.107 28 C 0.050 3.950 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.251 0.749 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.627 -24.170 -8.514 26.040 hybrid contribution -0.095 0.483 -0.747 0.895 sum -4.723 -23.688 -9.261 25.868 Atomic orbital electron populations 1.69930 1.04984 1.25361 1.56743 1.24842 0.95828 0.97884 1.01887 0.85948 0.78711 0.83235 0.77294 1.20354 1.21610 1.21622 1.19032 0.90515 0.81431 1.44246 0.89790 1.43971 1.01221 0.99874 1.87689 1.19743 0.85616 0.84706 1.01832 1.21554 0.92970 0.99278 0.94301 1.20493 0.97283 0.93379 1.01923 1.20813 0.96897 0.93864 1.00477 1.19420 0.93583 0.93615 1.06740 1.20198 1.02984 0.90033 0.82222 1.46061 1.72561 1.06623 1.09888 1.17848 0.77221 0.82893 0.86803 1.90797 1.50541 1.55712 1.44082 1.20931 0.99629 0.90309 0.92334 1.22165 0.97961 0.95839 0.98396 1.21569 0.95245 1.00743 0.91588 1.22367 1.01764 0.92740 1.01756 1.19098 0.95610 0.86761 0.85420 1.84825 1.34247 1.60316 1.49177 1.67031 1.12252 1.40484 1.00150 1.20303 0.97154 0.92521 1.00111 1.20715 0.97033 0.93354 0.99597 1.19708 0.92313 0.84318 0.98703 0.93519 0.91767 0.91771 0.86101 0.86318 0.90460 0.90477 0.74873 0.82868 0.83381 0.83550 0.73796 0.86515 0.94558 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.44 55.49 0.58 -26.18 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.25 10.32 -15.06 -0.16 -6.41 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 9 N -0.60 -15.69 3.41 -175.67 -0.60 -16.29 16 10 C 0.21 5.07 5.39 -5.08 -0.03 5.04 16 11 C -0.08 -1.61 6.22 -104.57 -0.65 -2.26 16 12 C -0.11 -1.87 10.05 -39.54 -0.40 -2.27 16 13 C -0.10 -1.44 9.70 -39.61 -0.38 -1.82 16 14 C -0.13 -1.85 5.25 -104.65 -0.55 -2.40 16 15 C 0.17 2.02 5.80 -5.19 -0.03 1.99 16 16 N -0.70 -8.39 5.54 -62.33 -0.35 -8.74 16 17 C 0.57 7.09 7.81 -12.19 -0.10 7.00 16 18 O -0.53 -7.78 16.32 5.35 0.09 -7.70 16 19 C 0.11 1.15 6.75 -83.02 -0.56 0.59 16 20 C -0.12 -1.01 9.63 -39.05 -0.38 -1.38 16 21 C -0.07 -0.38 10.16 -39.35 -0.40 -0.78 16 22 C -0.16 -1.03 10.05 -39.16 -0.39 -1.42 16 23 C 0.31 2.78 7.74 -17.14 -0.13 2.65 16 24 O -0.48 -3.79 13.56 -18.71 -0.25 -4.04 16 25 N -0.48 -5.23 9.57 -9.87 -0.09 -5.32 16 26 C -0.08 -1.29 9.70 -39.54 -0.38 -1.67 16 27 C -0.11 -2.05 6.22 -104.57 -0.65 -2.70 16 28 C 0.18 3.80 7.25 -5.09 -0.04 3.76 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 31 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 32 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.41 4.98 7.79 -40.82 -0.32 4.66 16 37 H 0.15 1.13 7.63 -52.49 -0.40 0.73 16 38 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.40 1.19 9.06 45.56 0.41 1.60 16 41 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -33.96 371.57 -9.80 -43.75 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.43 Total: 4.48 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -5.32 Total: -2.41 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.46 Total: -56.52 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.17 Total: -11.74 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.96 -9.80 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054260103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.097 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds