Wall clock time and date at job start Tue Mar 31 2020 22:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00031 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46652 * 299.99437 * 3 2 1 6 6 H 1.48498 * 109.47306 * 59.99319 * 3 2 1 7 7 C 1.38812 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00254 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.46635 * 126.55998 * 359.97438 * 9 7 2 11 11 C 1.50781 * 107.69778 * 180.02562 * 10 9 7 12 12 C 1.38445 * 131.20165 * 179.97438 * 11 10 9 13 13 C 1.38155 * 120.10282 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.95857 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.01649 * 179.97438 * 14 13 12 16 16 N 1.46509 * 109.46998 * 90.00058 * 15 14 13 17 17 C 1.34776 * 119.99822 * 180.02562 * 16 15 14 18 18 O 1.21515 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.48153 * 119.99826 * 180.02562 * 17 16 15 20 20 C 1.39163 * 119.69225 * 179.97438 * 19 17 16 21 21 C 1.38744 * 119.18695 * 180.02562 * 20 19 17 22 22 C 1.38367 * 118.55965 * 0.02562 * 21 20 19 23 23 C 1.39247 * 119.30591 * 359.97438 * 22 21 20 24 24 O 1.35668 * 119.61524 * 179.97438 * 23 22 21 25 25 N 1.31927 * 120.76821 * 0.25073 * 23 22 21 26 26 C 1.38140 * 119.96498 * 0.27679 * 14 13 12 27 27 C 1.38067 * 108.86117 * 359.97438 * 11 10 9 28 28 C 1.46633 * 126.56462 * 179.97438 * 9 7 2 29 29 H 0.97001 * 120.00283 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.81468 * 60.45703 * 10 9 7 31 31 H 1.08998 * 109.81446 * 299.54657 * 10 9 7 32 32 H 1.08004 * 119.95417 * 0.02562 * 12 11 10 33 33 H 1.07995 * 120.01630 * 179.97438 * 13 12 11 34 34 H 1.08995 * 109.47126 * 330.00203 * 15 14 13 35 35 H 1.08996 * 109.47108 * 209.99994 * 15 14 13 36 36 H 0.97001 * 119.99688 * 0.02562 * 16 15 14 37 37 H 1.07996 * 120.40700 * 0.04657 * 20 19 17 38 38 H 1.07995 * 120.71753 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.34564 * 180.02562 * 22 21 20 40 40 H 0.96700 * 114.00436 * 89.99853 * 24 23 22 41 41 H 1.08002 * 119.95007 * 179.72651 * 26 14 13 42 42 H 1.08997 * 109.81093 * 60.44910 * 28 9 7 43 43 H 1.09007 * 109.81059 * 299.54602 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1312 -2.5556 0.0005 11 6 -0.4225 -4.0351 0.0012 12 6 -1.6207 -4.7286 0.0019 13 6 -1.6216 -6.1102 0.0029 14 6 -0.4243 -6.8013 0.0027 15 6 -0.4238 -8.3084 0.0044 16 7 -0.4247 -8.7982 -1.3763 17 6 -0.4250 -10.1236 -1.6211 18 8 -0.4239 -10.9122 -0.6966 19 6 -0.4254 -10.6190 -3.0174 20 6 -0.4251 -11.9888 -3.2628 21 6 -0.4250 -12.4412 -4.5744 22 6 -0.4245 -11.5080 -5.5960 23 6 -0.4248 -10.1518 -5.2803 24 8 -0.4239 -9.2314 -6.2770 25 7 -0.4205 -9.7515 -4.0232 26 6 0.7716 -6.1099 0.0072 27 6 0.7732 -4.7253 0.0010 28 6 1.9087 -3.7335 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5561 -2.0955 -0.8916 31 1 -0.5561 -2.0955 0.8926 32 1 -2.5562 -4.1889 0.0016 33 1 -2.5570 -6.6498 0.0039 34 1 -1.3132 -8.6714 0.5193 35 1 0.4668 -8.6708 0.5179 36 1 -0.4252 -8.1687 -2.1143 37 1 -0.4254 -12.6911 -2.4423 38 1 -0.4243 -13.4988 -4.7932 39 1 -0.4248 -11.8281 -6.6274 40 1 -1.3070 -8.9645 -6.5668 41 1 1.7068 -6.6501 0.0115 42 1 2.5197 -3.8712 0.8926 43 1 2.5197 -3.8713 -0.8917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054260103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:33 Heat of formation + Delta-G solvation = -1.515245 kcal Electronic energy + Delta-G solvation = -27297.540810 eV Core-core repulsion = 23307.874238 eV Total energy + Delta-G solvation = -3989.666572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81875 -41.15464 -40.24647 -38.05780 -37.77758 -35.85068 -34.20521 -33.66619 -32.49289 -31.63191 -31.25940 -29.06136 -27.75780 -26.53919 -25.09216 -24.22704 -23.59533 -22.12512 -21.92138 -21.46853 -19.86851 -19.01599 -18.92932 -17.62485 -17.24892 -17.10544 -16.74393 -16.69359 -16.38649 -16.16292 -16.07713 -15.95092 -15.59276 -15.09987 -14.85363 -14.52323 -14.33871 -14.09697 -13.55634 -13.49112 -13.45831 -13.33190 -13.16787 -13.07581 -13.04431 -12.77951 -12.73793 -12.06554 -12.00703 -11.84995 -11.70372 -11.62414 -11.03389 -10.95389 -10.55287 -10.27007 -9.97621 -9.74030 -9.61064 -8.86889 -7.94873 -5.32018 -0.46401 0.09825 0.24283 0.43259 1.45033 1.46909 1.57637 1.59934 2.03727 2.43484 2.48226 2.72498 2.84395 3.27566 3.42629 3.44368 3.52126 3.76587 3.85958 3.93203 3.95105 4.04721 4.11094 4.31863 4.38917 4.48454 4.52707 4.62144 4.68557 4.75766 4.81626 4.94926 4.96759 5.06784 5.15591 5.26621 5.27906 5.30361 5.42424 5.44075 5.50350 5.54240 5.84115 6.02417 6.08194 6.29150 6.55571 6.76149 6.98949 7.04258 7.63471 8.31578 9.18598 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.002132 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.311822 B =13128.647594 C =14006.823917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.066 4.066 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.222 3.778 11 C -0.111 4.111 12 C -0.110 4.110 13 C -0.087 4.087 14 C -0.111 4.111 15 C 0.173 3.827 16 N -0.699 5.699 17 C 0.569 3.431 18 O -0.561 6.561 19 C 0.079 3.921 20 C -0.124 4.124 21 C -0.054 4.054 22 C -0.151 4.151 23 C 0.296 3.704 24 O -0.492 6.492 25 N -0.506 5.506 26 C -0.077 4.077 27 C -0.118 4.118 28 C 0.171 3.829 29 H 0.251 0.749 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.415 0.585 37 H 0.158 0.842 38 H 0.188 0.812 39 H 0.178 0.822 40 H 0.421 0.579 41 H 0.139 0.861 42 H 0.042 0.958 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 -28.025 -10.573 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.351 5.351 10 C 0.097 3.903 11 C -0.112 4.112 12 C -0.129 4.129 13 C -0.105 4.105 14 C -0.112 4.112 15 C 0.050 3.950 16 N -0.350 5.350 17 C 0.354 3.646 18 O -0.440 6.440 19 C -0.058 4.058 20 C -0.145 4.145 21 C -0.079 4.079 22 C -0.172 4.172 23 C 0.114 3.886 24 O -0.303 6.303 25 N -0.228 5.228 26 C -0.095 4.095 27 C -0.118 4.118 28 C 0.047 3.953 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.151 0.849 33 H 0.173 0.827 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.251 0.749 37 H 0.176 0.824 38 H 0.205 0.795 39 H 0.195 0.805 40 H 0.283 0.717 41 H 0.157 0.843 42 H 0.060 0.940 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.631 -27.462 -9.695 29.489 hybrid contribution -0.126 1.341 -0.471 1.427 sum -4.756 -26.121 -10.166 28.430 Atomic orbital electron populations 1.70160 1.06495 1.25782 1.57631 1.25787 0.96787 1.01402 1.01889 0.84863 0.78158 0.78522 0.76859 1.18707 1.21588 1.21615 1.19446 0.91145 0.82611 1.44018 0.89182 1.44280 1.02105 1.01192 1.87566 1.19280 0.84865 0.87805 0.98389 1.21216 0.95094 0.96588 0.98319 1.20694 0.96419 0.94598 1.01172 1.21167 0.98582 0.92625 0.98165 1.19639 0.92819 0.94737 1.03969 1.20179 1.03983 0.88195 0.82626 1.45999 1.72564 1.06729 1.09680 1.18132 0.76337 0.82573 0.87537 1.90772 1.51926 1.56194 1.45098 1.20758 1.02328 0.91356 0.91386 1.22354 0.97435 0.94826 0.99921 1.22012 0.93185 1.02598 0.90127 1.22707 0.99573 0.91466 1.03483 1.19445 0.96136 0.88054 0.84960 1.84784 1.36102 1.60553 1.48829 1.66893 1.13462 1.41391 1.01094 1.20506 0.98999 0.90910 0.99131 1.20570 0.95331 0.94432 1.01508 1.19798 0.93408 0.83248 0.98886 0.93979 0.95705 0.95695 0.84940 0.82658 0.89125 0.89998 0.74865 0.82413 0.79461 0.80499 0.71731 0.84348 0.94031 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.44 21.65 0.23 -57.94 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 3 Si 0.99 46.13 29.55 68.60 2.03 48.16 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.24 -14.11 10.32 84.03 0.87 -13.24 16 8 H 0.09 4.92 7.83 -2.91 -0.02 4.89 16 9 N -0.63 -34.28 3.41 -709.70 -2.42 -36.70 16 10 C 0.22 11.72 5.39 85.63 0.46 12.18 16 11 C -0.11 -4.63 6.22 -19.83 -0.12 -4.76 16 12 C -0.11 -3.62 10.05 22.30 0.22 -3.40 16 13 C -0.09 -2.23 9.70 22.25 0.22 -2.01 16 14 C -0.11 -2.81 5.25 -19.89 -0.10 -2.91 16 15 C 0.17 3.68 5.80 85.63 0.50 4.17 16 16 N -0.70 -15.47 5.54 -469.40 -2.60 -18.07 16 17 C 0.57 13.45 7.81 86.88 0.68 14.13 16 18 O -0.56 -15.61 16.32 -3.76 -0.06 -15.67 16 19 C 0.08 1.60 6.75 41.85 0.28 1.88 16 20 C -0.12 -1.77 9.63 22.61 0.22 -1.55 16 21 C -0.05 -0.42 10.16 22.42 0.23 -0.19 16 22 C -0.15 -1.37 10.05 22.54 0.23 -1.14 16 23 C 0.30 4.71 7.74 84.92 0.66 5.37 16 24 O -0.49 -7.06 13.56 -89.85 -1.22 -8.28 16 25 N -0.51 -10.49 9.57 -298.19 -2.85 -13.35 16 26 C -0.08 -2.29 9.70 22.30 0.22 -2.07 16 27 C -0.12 -4.57 6.22 -19.83 -0.12 -4.69 16 28 C 0.17 7.65 7.25 85.63 0.62 8.27 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 30 H 0.03 1.46 7.49 -2.39 -0.02 1.45 16 31 H 0.03 1.47 7.49 -2.39 -0.02 1.45 16 32 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 35 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.41 9.32 7.79 -92.71 -0.72 8.60 16 37 H 0.16 2.02 7.63 -2.91 -0.02 2.00 16 38 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 39 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 40 H 0.42 1.89 9.06 -74.06 -0.67 1.22 16 41 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -78.34 371.57 -1.71 -80.05 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.32 Total: 15.09 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 5.51 Total: 6.71 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.64 Total: -126.06 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.28 Total: -23.95 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.34 -1.71 -80.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054260103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.535 kcal (2) G-P(sol) polarization free energy of solvation -78.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds