Wall clock time and date at job start Tue Mar 31 2020 23:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39841 * 126.45735 * 2 1 4 4 C 1.35442 * 107.86487 * 180.30026 * 3 2 1 5 5 N 1.35531 * 108.87438 * 359.74157 * 4 3 2 6 6 H 0.97000 * 125.68434 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64091 * 359.97438 * 5 4 3 8 8 C 1.46685 * 126.23008 * 180.02562 * 7 5 4 9 9 O 1.21696 * 119.99493 * 180.02562 * 8 7 5 10 10 N 1.34770 * 120.00245 * 0.02663 * 8 7 5 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46596 * 325.00243 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 15 15 C 1.53001 * 109.47049 * 64.99864 * 14 11 10 16 16 N 1.46496 * 109.46907 * 180.02562 * 15 14 11 17 17 C 1.34783 * 119.99823 * 179.97438 * 16 15 14 18 18 O 1.21272 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99949 * 180.02562 * 17 16 15 20 20 S 1.80999 * 109.47175 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99903 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00216 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99795 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00194 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46951 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47349 * 119.99969 * 25 23 21 28 28 H 1.48504 * 109.46938 * 240.00216 * 25 23 21 29 29 H 1.08996 * 109.47169 * 270.13601 * 1 2 3 30 30 H 1.09000 * 109.47356 * 30.14350 * 1 2 3 31 31 H 1.09000 * 109.46766 * 150.13882 * 1 2 3 32 32 H 1.07998 * 126.06305 * 0.02562 * 3 2 1 33 33 H 1.08003 * 125.56628 * 179.70241 * 4 3 2 34 34 H 0.97005 * 120.00370 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 38 38 H 1.08998 * 109.47192 * 185.00019 * 14 11 10 39 39 H 1.08998 * 109.46934 * 304.99865 * 14 11 10 40 40 H 1.08998 * 109.47250 * 300.00119 * 15 14 11 41 41 H 1.08998 * 109.47252 * 60.00195 * 15 14 11 42 42 H 0.97002 * 120.00674 * 0.02562 * 16 15 14 43 43 H 1.09002 * 109.46710 * 299.99997 * 19 17 16 44 44 H 1.08998 * 109.47090 * 60.00200 * 19 17 16 45 45 H 0.97001 * 120.00034 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 -0.0068 5 7 3.6284 -0.6624 -0.0052 6 1 4.4190 -1.2243 -0.0087 7 6 2.3262 -1.1088 0.0032 8 6 1.8899 -2.5092 0.0081 9 8 0.7027 -2.7765 0.0151 10 7 2.8037 -3.4998 0.0047 11 6 2.3679 -4.8985 0.0090 12 1 1.4591 -4.9940 0.6033 13 6 2.0886 -5.3501 -1.4260 14 6 3.4674 -5.7735 0.6142 15 6 3.6598 -5.4050 2.0866 16 7 4.7130 -6.2425 2.6659 17 6 5.0569 -6.0933 3.9606 18 8 4.4941 -5.2661 4.6460 19 6 6.1407 -6.9543 4.5564 20 16 6.3683 -6.5186 6.2983 21 6 7.6527 -7.6447 6.7301 22 1 8.0475 -8.3236 5.9888 23 6 8.1580 -7.6586 8.0228 24 7 7.6779 -6.8301 8.9260 25 14 9.5202 -8.8520 8.4806 26 1 9.8818 -9.6690 7.2943 27 1 10.7103 -8.0921 8.9403 28 1 9.0510 -9.7441 9.5710 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8887 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 2.0136 2.1548 0.0004 33 1 4.4972 1.3253 -0.0130 34 1 3.7500 -3.2868 -0.0012 35 1 2.9974 -5.2545 -2.0203 36 1 1.7640 -6.3905 -1.4227 37 1 1.3053 -4.7267 -1.8571 38 1 3.1811 -6.8223 0.5365 39 1 4.4000 -5.6105 0.0740 40 1 3.9462 -4.3562 2.1643 41 1 2.7272 -5.5680 2.6268 42 1 5.1635 -6.9038 2.1176 43 1 5.8550 -8.0034 4.4789 44 1 7.0730 -6.7908 4.0158 45 1 8.0312 -6.8395 9.8293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:30 Heat of formation + Delta-G solvation = -45.711195 kcal Electronic energy + Delta-G solvation = -25840.260382 eV Core-core repulsion = 21984.121281 eV Total energy + Delta-G solvation = -3856.139101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65499 -39.74444 -39.10943 -36.83895 -34.54382 -32.94940 -32.45918 -32.02574 -30.30795 -29.60066 -28.18333 -27.10994 -25.52652 -23.90343 -22.81682 -21.52234 -20.84060 -20.39985 -19.48706 -18.92501 -17.87018 -16.74653 -16.37198 -16.10643 -15.85853 -15.53398 -15.34368 -14.83418 -14.42750 -14.26067 -14.16254 -13.95510 -13.91584 -13.74251 -13.29573 -13.23061 -12.88818 -12.86472 -12.60886 -12.51947 -12.38417 -12.22343 -11.84013 -11.70482 -11.58951 -11.31904 -11.09672 -11.05140 -10.78399 -10.20005 -9.83984 -9.56915 -9.42745 -9.10978 -9.07891 -8.95587 -8.45623 -8.26557 -6.53560 -6.24720 -3.95596 1.16929 2.43928 2.71589 2.81205 2.97580 3.04682 3.11461 3.19079 3.25425 3.29710 3.64039 4.17232 4.36214 4.45479 4.59183 4.67111 4.71156 4.90303 5.00940 5.03094 5.03657 5.10498 5.17262 5.24069 5.32127 5.50219 5.53600 5.57987 5.63662 5.67228 5.69769 5.80890 5.84547 5.87554 5.88600 6.06363 6.08965 6.16391 6.41217 6.53463 6.65330 7.00767 7.17665 7.56737 7.63699 7.88231 8.32314 8.55886 9.20634 10.82736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.001923 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.756840 B =14559.581508 C =15580.123595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.072 4.072 3 C -0.213 4.213 4 C 0.029 3.971 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.064 4.064 8 C 0.593 3.407 9 O -0.525 6.525 10 N -0.728 5.728 11 C 0.147 3.853 12 H 0.096 0.904 13 C -0.162 4.162 14 C -0.140 4.140 15 C 0.121 3.879 16 N -0.741 5.741 17 C 0.530 3.470 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.172 0.828 34 H 0.393 0.607 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 9.426 -25.447 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.238 4.238 4 C -0.107 4.107 5 N -0.137 5.137 6 H 0.253 0.747 7 C -0.177 4.177 8 C 0.381 3.619 9 O -0.401 6.401 10 N -0.380 5.380 11 C 0.043 3.957 12 H 0.114 0.886 13 C -0.220 4.220 14 C -0.178 4.178 15 C -0.003 4.003 16 N -0.396 5.396 17 C 0.316 3.684 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.746 3.254 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.189 0.811 34 H 0.227 0.773 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.003 10.522 -24.098 28.133 hybrid contribution 2.848 -2.091 -0.710 3.604 sum -7.155 8.430 -24.808 27.161 Atomic orbital electron populations 1.20352 0.89262 1.02785 1.02386 1.19986 0.95947 0.90808 1.01297 1.20825 0.91837 0.98885 1.12215 1.22037 0.99661 0.82927 1.06062 1.41941 1.07110 1.07356 1.57305 0.74726 1.20194 0.83805 0.93495 1.20164 1.17025 0.85854 0.83010 0.76023 1.90817 1.15933 1.83230 1.50104 1.46000 1.09240 1.06297 1.76493 1.20909 0.98279 0.79304 0.97240 0.88576 1.22168 1.02177 1.01940 0.95754 1.22137 0.99297 1.01021 0.95350 1.21249 0.91754 0.95157 0.92157 1.46007 1.40414 1.41317 1.11829 1.20340 0.83453 0.83608 0.80991 1.90715 1.53367 1.35046 1.59838 1.23530 0.98953 1.01898 1.06008 1.85432 1.49223 1.51023 0.97758 1.22901 1.22841 1.23471 0.99151 0.90870 1.25006 0.97189 0.96160 0.95305 1.70028 1.41044 1.35471 1.03685 0.86108 0.80673 0.80127 0.78526 1.19626 1.20557 1.20538 0.91372 0.92034 0.90216 0.83916 0.81118 0.77322 0.92460 0.91255 0.91756 0.89217 0.90648 0.91869 0.91406 0.76846 0.89196 0.89274 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 9.82 36.00 0.35 -0.53 16 2 C -0.07 -0.75 6.21 -104.16 -0.65 -1.39 16 3 C -0.21 -1.80 10.76 -39.98 -0.43 -2.23 16 4 C 0.03 0.20 11.89 -16.92 -0.20 0.00 16 5 N -0.54 -3.81 5.99 -9.39 -0.06 -3.87 16 6 H 0.42 1.74 8.19 -40.82 -0.33 1.40 16 7 C -0.06 -0.65 7.06 -81.98 -0.58 -1.23 16 8 C 0.59 6.43 7.75 -12.85 -0.10 6.33 16 9 O -0.52 -7.25 14.47 5.19 0.08 -7.17 16 10 N -0.73 -5.68 4.53 -55.11 -0.25 -5.93 16 11 C 0.15 1.11 2.57 -67.93 -0.17 0.93 16 12 H 0.10 0.92 7.58 -51.93 -0.39 0.53 16 13 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 14 C -0.14 -0.90 4.87 -26.73 -0.13 -1.03 16 15 C 0.12 1.29 5.56 -4.04 -0.02 1.27 16 16 N -0.74 -9.12 5.56 -60.30 -0.33 -9.45 16 17 C 0.53 9.66 7.85 -10.98 -0.09 9.57 16 18 O -0.52 -11.71 15.86 5.56 0.09 -11.62 16 19 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 25 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.88 6.49 -51.93 -0.34 0.54 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.39 2.17 7.73 -40.82 -0.32 1.86 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.40 3.59 8.47 -40.82 -0.35 3.25 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -37.95 395.91 -9.00 -46.95 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.75 Total: 2.79 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.24 Total: -4.69 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.09 Total: -44.59 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.16 Total: -18.79 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.95 -9.00 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.237 kcal (2) G-P(sol) polarization free energy of solvation -37.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds