Wall clock time and date at job start Tue Mar 31 2020 23:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39841 * 126.45735 * 2 1 4 4 C 1.35442 * 107.86487 * 180.30026 * 3 2 1 5 5 N 1.35531 * 108.87438 * 359.74157 * 4 3 2 6 6 H 0.97000 * 125.68434 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64091 * 359.97438 * 5 4 3 8 8 C 1.46685 * 126.23008 * 180.02562 * 7 5 4 9 9 O 1.21696 * 119.99493 * 180.02562 * 8 7 5 10 10 N 1.34770 * 120.00245 * 0.02663 * 8 7 5 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46596 * 325.00243 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 15 15 C 1.53001 * 109.47049 * 64.99864 * 14 11 10 16 16 N 1.46496 * 109.46907 * 180.02562 * 15 14 11 17 17 C 1.34783 * 119.99823 * 179.97438 * 16 15 14 18 18 O 1.21272 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99949 * 180.02562 * 17 16 15 20 20 S 1.80999 * 109.47175 * 180.02562 * 19 17 16 21 21 C 1.76195 * 99.99903 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00216 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99795 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00194 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46951 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47349 * 119.99969 * 25 23 21 28 28 H 1.48504 * 109.46938 * 240.00216 * 25 23 21 29 29 H 1.08996 * 109.47169 * 270.13601 * 1 2 3 30 30 H 1.09000 * 109.47356 * 30.14350 * 1 2 3 31 31 H 1.09000 * 109.46766 * 150.13882 * 1 2 3 32 32 H 1.07998 * 126.06305 * 0.02562 * 3 2 1 33 33 H 1.08003 * 125.56628 * 179.70241 * 4 3 2 34 34 H 0.97005 * 120.00370 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 38 38 H 1.08998 * 109.47192 * 185.00019 * 14 11 10 39 39 H 1.08998 * 109.46934 * 304.99865 * 14 11 10 40 40 H 1.08998 * 109.47250 * 300.00119 * 15 14 11 41 41 H 1.08998 * 109.47252 * 60.00195 * 15 14 11 42 42 H 0.97002 * 120.00674 * 0.02562 * 16 15 14 43 43 H 1.09002 * 109.46710 * 299.99997 * 19 17 16 44 44 H 1.08998 * 109.47090 * 60.00200 * 19 17 16 45 45 H 0.97001 * 120.00034 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 -0.0068 5 7 3.6284 -0.6624 -0.0052 6 1 4.4190 -1.2243 -0.0087 7 6 2.3262 -1.1088 0.0032 8 6 1.8899 -2.5092 0.0081 9 8 0.7027 -2.7765 0.0151 10 7 2.8037 -3.4998 0.0047 11 6 2.3679 -4.8985 0.0090 12 1 1.4591 -4.9940 0.6033 13 6 2.0886 -5.3501 -1.4260 14 6 3.4674 -5.7735 0.6142 15 6 3.6598 -5.4050 2.0866 16 7 4.7130 -6.2425 2.6659 17 6 5.0569 -6.0933 3.9606 18 8 4.4941 -5.2661 4.6460 19 6 6.1407 -6.9543 4.5564 20 16 6.3683 -6.5186 6.2983 21 6 7.6527 -7.6447 6.7301 22 1 8.0475 -8.3236 5.9888 23 6 8.1580 -7.6586 8.0228 24 7 7.6779 -6.8301 8.9260 25 14 9.5202 -8.8520 8.4806 26 1 9.8818 -9.6690 7.2943 27 1 10.7103 -8.0921 8.9403 28 1 9.0510 -9.7441 9.5710 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8887 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 2.0136 2.1548 0.0004 33 1 4.4972 1.3253 -0.0130 34 1 3.7500 -3.2868 -0.0012 35 1 2.9974 -5.2545 -2.0203 36 1 1.7640 -6.3905 -1.4227 37 1 1.3053 -4.7267 -1.8571 38 1 3.1811 -6.8223 0.5365 39 1 4.4000 -5.6105 0.0740 40 1 3.9462 -4.3562 2.1643 41 1 2.7272 -5.5680 2.6268 42 1 5.1635 -6.9038 2.1176 43 1 5.8550 -8.0034 4.4789 44 1 7.0730 -6.7908 4.0158 45 1 8.0312 -6.8395 9.8293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075675667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:29 Heat of formation + Delta-G solvation = -74.222324 kcal Electronic energy + Delta-G solvation = -25841.496717 eV Core-core repulsion = 21984.121281 eV Total energy + Delta-G solvation = -3857.375436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30384 -40.74738 -40.24286 -37.69907 -35.66460 -34.59203 -33.66851 -32.84332 -31.48216 -30.29923 -29.22464 -27.83416 -27.66231 -24.71234 -23.57860 -22.22920 -21.75623 -21.42346 -20.25324 -19.82174 -19.55809 -17.82179 -17.47937 -17.25068 -16.88741 -16.69130 -16.58563 -16.25904 -15.81010 -15.31488 -15.01997 -14.94812 -14.71643 -14.62479 -14.46094 -14.39030 -13.92562 -13.61766 -13.58489 -13.56281 -13.19695 -13.16781 -12.99342 -12.92428 -12.65147 -12.55901 -12.45736 -12.42125 -11.96109 -11.71118 -11.16759 -11.04980 -10.97904 -10.29506 -10.27242 -10.12333 -9.71031 -9.12197 -8.68090 -8.35561 -6.13875 0.45226 1.26545 1.41148 1.47041 1.57772 1.59403 1.81895 2.05214 2.23739 2.25982 2.27889 2.33577 2.98786 3.30935 3.68243 3.76772 3.92550 4.00711 4.06102 4.24561 4.25458 4.29853 4.38134 4.40454 4.44803 4.50611 4.58583 4.77572 4.85079 4.86361 4.87919 4.97602 5.00351 5.09708 5.16051 5.29444 5.39934 5.41183 5.41699 5.47974 5.76057 5.97173 6.19377 6.43096 6.50408 6.61023 7.05898 7.13577 7.24178 8.73879 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.001923 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.756840 B =14559.581508 C =15580.123595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.099 4.099 3 C -0.233 4.233 4 C 0.046 3.954 5 N -0.530 5.530 6 H 0.429 0.571 7 C -0.090 4.090 8 C 0.586 3.414 9 O -0.566 6.566 10 N -0.716 5.716 11 C 0.146 3.854 12 H 0.070 0.930 13 C -0.154 4.154 14 C -0.121 4.121 15 C 0.120 3.880 16 N -0.709 5.709 17 C 0.531 3.469 18 O -0.569 6.569 19 C -0.128 4.128 20 S -0.158 6.158 21 C -0.544 4.544 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.275 1.275 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.157 0.843 33 H 0.210 0.790 34 H 0.406 0.594 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.420 0.580 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 8.201 -27.799 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.256 4.256 4 C -0.091 4.091 5 N -0.127 5.127 6 H 0.269 0.731 7 C -0.203 4.203 8 C 0.376 3.624 9 O -0.445 6.445 10 N -0.368 5.368 11 C 0.042 3.958 12 H 0.088 0.912 13 C -0.212 4.212 14 C -0.159 4.159 15 C -0.004 4.004 16 N -0.364 5.364 17 C 0.316 3.684 18 O -0.448 6.448 19 C -0.279 4.279 20 S 0.070 5.930 21 C -0.691 4.691 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.178 1.178 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.227 0.773 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.257 0.743 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.368 9.247 -26.524 29.040 hybrid contribution 1.992 -1.652 -0.090 2.589 sum -5.377 7.595 -26.614 28.194 Atomic orbital electron populations 1.20285 0.89708 1.02638 1.01801 1.20303 0.96310 0.92083 1.02135 1.21111 0.92385 0.99136 1.13001 1.22667 1.00362 0.82871 1.03232 1.41941 1.06570 1.07832 1.56346 0.73084 1.20144 0.85191 0.93091 1.21829 1.17251 0.85669 0.83887 0.75636 1.90788 1.17633 1.83894 1.52227 1.45913 1.09554 1.06051 1.75289 1.20930 0.97792 0.79255 0.97868 0.91214 1.22093 1.02281 1.02236 0.94629 1.22048 1.00205 1.01706 0.91975 1.21354 0.89942 0.94490 0.94587 1.45685 1.39800 1.41079 1.09831 1.20136 0.82893 0.82815 0.82508 1.90707 1.55152 1.37308 1.61612 1.23368 1.00868 1.03153 1.00549 1.85651 1.49968 1.52456 1.04967 1.23233 1.22704 1.23411 0.99794 0.89729 1.26159 0.99955 0.98074 0.95176 1.70196 1.42892 1.37569 1.04215 0.84887 0.76869 0.77467 0.78606 1.17845 1.19946 1.20087 0.92202 0.90318 0.92126 0.82493 0.77312 0.75772 0.90674 0.89789 0.94027 0.87161 0.87651 0.92765 0.93671 0.74263 0.87117 0.86856 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.82 71.24 0.70 -1.14 16 2 C -0.10 -2.12 6.21 -19.57 -0.12 -2.24 16 3 C -0.23 -3.70 10.76 22.01 0.24 -3.47 16 4 C 0.05 0.52 11.89 83.48 0.99 1.51 16 5 N -0.53 -6.65 5.99 -183.63 -1.10 -7.75 16 6 H 0.43 2.64 8.19 -92.71 -0.76 1.88 16 7 C -0.09 -1.83 7.06 40.35 0.28 -1.55 16 8 C 0.59 13.18 7.75 86.45 0.67 13.85 16 9 O -0.57 -16.83 14.47 -4.34 -0.06 -16.90 16 10 N -0.72 -10.65 4.53 -446.49 -2.02 -12.67 16 11 C 0.15 2.02 2.57 44.99 0.12 2.14 16 12 H 0.07 1.37 7.58 -2.39 -0.02 1.36 16 13 C -0.15 -1.72 9.48 71.98 0.68 -1.04 16 14 C -0.12 -1.18 4.87 30.59 0.15 -1.03 16 15 C 0.12 2.38 5.56 86.38 0.48 2.86 16 16 N -0.71 -15.61 5.56 -463.07 -2.57 -18.18 16 17 C 0.53 18.77 7.85 87.66 0.69 19.46 16 18 O -0.57 -26.34 15.86 -3.01 -0.05 -26.39 16 19 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 20 S -0.16 -8.66 20.57 -56.49 -1.16 -9.83 16 21 C -0.54 -30.60 9.50 67.95 0.65 -29.95 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.62 5.49 84.86 0.47 1.08 16 24 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 25 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.49 6.49 -2.39 -0.02 1.48 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.41 3.72 7.73 -92.70 -0.72 3.00 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 1.21 7.75 -2.39 -0.02 1.19 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.42 5.75 8.47 -92.71 -0.79 4.97 16 43 H 0.11 3.74 8.14 -2.39 -0.02 3.73 16 44 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -88.21 395.91 0.55 -87.66 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -1.23 Total: 18.49 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.43 Total: -3.94 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -5.41 Total: -94.18 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.11 Total: -43.28 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -88.21 0.55 -87.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.438 kcal (2) G-P(sol) polarization free energy of solvation -88.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds