Wall clock time and date at job start Tue Mar 31 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.24791 * 2 1 4 4 C 1.54839 * 109.36016 * 119.66088 * 2 1 3 5 5 C 1.50120 * 110.81764 * 81.33485 * 4 2 1 6 6 H 1.09001 * 110.25462 * 338.57255 * 5 4 2 7 7 N 1.46502 * 110.25505 * 216.65712 * 5 4 2 8 8 C 1.34772 * 120.00427 * 154.99607 * 7 5 4 9 9 O 1.21650 * 119.99907 * 0.02562 * 8 7 5 10 10 C 1.47178 * 120.00380 * 180.02562 * 8 7 5 11 11 C 1.35092 * 122.48902 * 180.02562 * 10 8 7 12 12 S 1.76191 * 108.21721 * 180.20601 * 11 10 8 13 13 C 1.76058 * 90.15807 * 359.70934 * 12 11 10 14 14 O 1.35501 * 125.17709 * 180.08619 * 13 12 11 15 15 N 1.29249 * 109.64013 * 0.29792 * 13 12 11 16 16 C 1.52526 * 105.41236 * 97.68537 * 5 4 2 17 17 C 1.46244 * 114.28012 * 270.59246 * 16 5 4 18 18 N 1.50169 * 107.52960 * 58.40516 * 17 16 5 19 19 C 1.36941 * 120.53315 * 109.56751 * 18 17 16 20 20 H 1.08000 * 119.99619 * 156.69990 * 19 18 17 21 21 C 1.38810 * 120.00022 * 336.70589 * 19 18 17 22 22 N 1.31622 * 119.99774 * 340.41426 * 21 19 18 23 23 Si 1.86796 * 120.00217 * 160.41933 * 21 19 18 24 24 H 1.48505 * 109.47176 * 89.99648 * 23 21 19 25 25 H 1.48496 * 109.47514 * 209.99762 * 23 21 19 26 26 H 1.48500 * 109.46902 * 329.99631 * 23 21 19 27 27 C 1.43428 * 118.93216 * 289.59335 * 18 17 16 28 28 H 1.09004 * 109.46932 * 300.34414 * 1 2 3 29 29 H 1.09000 * 109.47146 * 60.33643 * 1 2 3 30 30 H 1.08999 * 109.46976 * 180.33833 * 1 2 3 31 31 H 1.08994 * 109.46812 * 179.65881 * 3 2 1 32 32 H 1.09002 * 109.47274 * 299.66011 * 3 2 1 33 33 H 1.09000 * 109.46956 * 59.65826 * 3 2 1 34 34 H 1.09001 * 109.20465 * 320.99458 * 4 2 1 35 35 H 1.09000 * 109.17540 * 201.66019 * 4 2 1 36 36 H 0.96996 * 119.99354 * 335.00797 * 7 5 4 37 37 H 1.07994 * 125.89122 * 359.93867 * 11 10 8 38 38 H 0.96696 * 113.99661 * 270.23905 * 14 13 12 39 39 H 1.08999 * 108.52755 * 31.83509 * 16 5 4 40 40 H 1.09006 * 108.52312 * 149.35491 * 16 5 4 41 41 H 1.09005 * 109.84304 * 298.90807 * 17 16 5 42 42 H 1.08991 * 109.90439 * 177.95180 * 17 16 5 43 43 H 0.97006 * 119.99566 * 179.97438 * 22 21 19 44 44 H 1.09005 * 108.15796 * 329.84874 * 27 18 17 45 45 H 1.09000 * 108.16455 * 213.28469 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0433 -0.7229 1.2694 5 6 2.0207 -2.2121 1.0812 6 1 1.3236 -2.4817 0.2879 7 7 1.6451 -2.8758 2.3322 8 6 1.0802 -4.0990 2.3029 9 8 0.8826 -4.6523 1.2377 10 6 0.7024 -4.7655 3.5595 11 6 0.1339 -5.9906 3.5887 12 16 -0.1643 -6.4196 5.2714 13 6 0.5249 -4.8847 5.7898 14 8 0.6433 -4.4771 7.0767 15 7 0.8965 -4.2040 4.7559 16 6 3.4446 -2.5927 0.6887 17 6 3.6999 -2.5624 -0.7510 18 7 3.4055 -1.1711 -1.2334 19 6 4.4212 -0.3432 -1.6313 20 1 4.2181 0.4741 -2.3074 21 6 5.7117 -0.5547 -1.1658 22 7 5.9103 -1.2701 -0.0790 23 14 7.1665 0.1762 -2.0817 24 1 7.4606 1.5291 -1.5445 25 1 8.3542 -0.6968 -1.9015 26 1 6.8412 0.2774 -3.5271 27 6 2.0435 -0.7231 -1.2700 28 1 -0.3633 0.5192 0.8869 29 1 -0.3633 0.5086 -0.8930 30 1 -0.3633 -1.0276 0.0061 31 1 3.1243 1.4487 0.0061 32 1 1.6741 1.9552 -0.8930 33 1 1.6641 1.9587 0.8869 34 1 1.4075 -0.4586 2.1144 35 1 3.0647 -0.4029 1.4754 36 1 1.8029 -2.4346 3.1815 37 1 -0.1015 -6.6000 2.7287 38 1 -0.1229 -3.9880 7.4064 39 1 4.1343 -1.9044 1.1772 40 1 3.6476 -3.5991 1.0551 41 1 3.0488 -3.2750 -1.2574 42 1 4.7430 -2.8095 -0.9481 43 1 6.8122 -1.4182 0.2461 44 1 1.4059 -1.5888 -1.4493 45 1 1.9316 -0.0448 -2.1159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089470677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:07 Heat of formation + Delta-G solvation = 1.110625 kcal Electronic energy + Delta-G solvation = -28414.976391 eV Core-core repulsion = 24560.867637 eV Total energy + Delta-G solvation = -3854.108754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.55506 -39.33748 -38.22300 -37.21312 -34.61127 -34.35521 -31.49396 -30.62623 -30.13966 -27.60994 -26.63989 -25.64895 -25.44529 -23.46702 -22.69737 -21.27908 -19.99163 -19.86013 -19.57849 -18.28024 -17.68924 -16.69578 -16.47543 -16.21092 -15.49042 -15.08738 -14.88047 -14.54766 -14.20922 -13.99437 -13.62390 -13.51771 -13.26026 -13.17451 -12.51125 -12.31188 -12.29288 -12.17153 -11.82064 -11.62844 -11.41200 -11.19986 -10.86157 -10.79723 -10.66847 -10.57063 -10.29559 -10.12141 -9.98237 -9.96694 -9.92030 -9.70241 -9.59797 -9.45100 -9.19724 -9.16956 -8.60658 -8.26450 -6.65812 -5.74761 -3.12884 0.12368 0.62900 1.15136 1.74147 3.05781 3.39430 3.40062 3.48285 3.50786 3.57920 4.47073 4.54634 4.92863 5.03340 5.27301 5.42568 5.48288 5.54554 5.57307 5.66872 5.91469 6.04870 6.11474 6.18434 6.32123 6.35097 6.41169 6.51134 6.60769 6.66448 6.68217 6.76738 6.83071 6.95194 7.02373 7.04628 7.09120 7.12312 7.27372 7.32904 7.62942 7.78339 7.86267 8.00489 8.43514 8.47316 9.23358 9.91584 10.45155 11.32233 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.003056 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.539864 B = 9160.233135 C = 9737.613958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.101 4.101 5 C 0.144 3.856 6 H 0.088 0.912 7 N -0.696 5.696 8 C 0.586 3.414 9 O -0.533 6.533 10 C 0.031 3.969 11 C -0.166 4.166 12 S 0.094 5.906 13 C 0.256 3.744 14 O -0.430 6.430 15 N -0.458 5.458 16 C -0.133 4.133 17 C 0.169 3.831 18 N -0.585 5.585 19 C -0.242 4.242 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.899 5.899 23 Si 0.896 3.104 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.167 3.833 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.403 0.597 37 H 0.196 0.804 38 H 0.408 0.592 39 H 0.103 0.897 40 H 0.028 0.972 41 H 0.009 0.991 42 H 0.091 0.909 43 H 0.251 0.749 44 H 0.028 0.972 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 -6.364 12.517 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.139 4.139 5 C 0.042 3.958 6 H 0.106 0.894 7 N -0.345 5.345 8 C 0.368 3.632 9 O -0.410 6.410 10 C -0.101 4.101 11 C -0.307 4.307 12 S 0.341 5.659 13 C -0.064 4.064 14 O -0.237 6.237 15 N -0.184 5.184 16 C -0.172 4.172 17 C 0.045 3.955 18 N -0.305 5.305 19 C -0.372 4.372 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.727 3.273 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.037 3.963 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.238 0.762 37 H 0.213 0.787 38 H 0.266 0.734 39 H 0.121 0.879 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.927 -7.369 12.440 20.075 hybrid contribution 0.728 1.243 -0.243 1.461 sum -13.198 -6.126 12.197 18.987 Atomic orbital electron populations 1.21850 0.96238 1.00742 1.00493 1.21938 0.93179 0.96188 0.97997 1.21740 1.02860 0.94789 0.99154 1.21784 1.02384 0.93049 0.96727 1.20598 0.98488 0.92315 0.84447 0.89426 1.46128 1.59995 1.17217 1.11128 1.17003 0.78332 0.81827 0.86035 1.90836 1.55736 1.64891 1.29564 1.20211 1.04402 0.93923 0.91526 1.27151 1.04187 0.99303 1.00102 1.85283 1.57789 1.23026 0.99784 1.25009 1.00564 0.92873 0.87995 1.84882 1.45789 1.74464 1.18572 1.66749 1.19077 1.34598 0.97987 1.21348 0.94168 1.00721 1.00996 1.20097 1.00729 0.83831 0.90815 1.44262 1.01048 1.10026 1.75198 1.19151 0.87310 1.10357 1.20343 0.91591 1.24862 0.98152 1.00331 0.96241 1.69965 1.20134 1.43781 1.20596 0.86395 0.82812 0.78274 0.79866 1.21703 1.21772 1.20732 1.20505 0.86922 0.95585 0.93288 0.93770 0.93281 0.93388 0.90923 0.93911 0.94839 0.93970 0.89937 0.76157 0.78677 0.73361 0.87873 0.95291 0.97289 0.89079 0.93845 0.95321 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.20 37.16 0.30 -1.77 16 2 C -0.09 -1.60 0.76 -152.53 -0.12 -1.72 16 3 C -0.13 -2.29 8.29 37.16 0.31 -1.99 16 4 C -0.10 -1.86 4.15 -27.19 -0.11 -1.97 16 5 C 0.14 2.74 2.16 -69.60 -0.15 2.59 16 6 H 0.09 1.80 5.16 -51.93 -0.27 1.53 16 7 N -0.70 -11.69 4.94 -56.60 -0.28 -11.97 16 8 C 0.59 9.92 7.79 -12.63 -0.10 9.82 16 9 O -0.53 -10.46 16.32 5.23 0.09 -10.38 16 10 C 0.03 0.43 6.67 -84.60 -0.56 -0.14 16 11 C -0.17 -1.84 10.84 29.61 0.32 -1.52 16 12 S 0.09 0.78 23.42 -107.50 -2.52 -1.74 16 13 C 0.26 2.58 8.88 51.68 0.46 3.04 16 14 O -0.43 -3.29 13.64 -18.20 -0.25 -3.54 16 15 N -0.46 -5.88 10.01 -11.34 -0.11 -6.00 16 16 C -0.13 -2.92 4.74 -30.18 -0.14 -3.06 16 17 C 0.17 4.03 5.24 -5.20 -0.03 4.00 16 18 N -0.59 -13.98 2.60 -175.08 -0.46 -14.44 16 19 C -0.24 -6.30 8.97 -15.06 -0.14 -6.43 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -24.36 9.43 55.49 0.52 -23.83 16 23 Si 0.90 21.29 29.60 -169.99 -5.03 16.25 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 C 0.17 3.44 4.00 -4.66 -0.02 3.42 16 28 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.74 7.57 -51.93 -0.39 0.35 16 31 H 0.07 1.53 7.47 -51.93 -0.39 1.14 16 32 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.08 1.77 6.65 -51.93 -0.35 1.42 16 36 H 0.40 6.21 8.00 -40.82 -0.33 5.89 16 37 H 0.20 1.91 8.01 -52.49 -0.42 1.49 16 38 H 0.41 0.84 9.06 45.56 0.41 1.26 16 39 H 0.10 2.54 5.29 -51.93 -0.27 2.26 16 40 H 0.03 0.64 8.02 -51.93 -0.42 0.23 16 41 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 42 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.03 0.58 6.69 -51.93 -0.35 0.24 16 45 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -30.33 367.22 -8.11 -38.44 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.55 Total: 7.41 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.06 Total: 4.24 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.33 Total: -56.23 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.16 Total: -13.91 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.52 Total: -1.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.33 -8.11 -38.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089470677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.548 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds