Wall clock time and date at job start Tue Mar 31 2020 23:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.24791 * 2 1 4 4 C 1.54839 * 109.36016 * 119.66088 * 2 1 3 5 5 C 1.50120 * 110.81764 * 81.33485 * 4 2 1 6 6 H 1.09001 * 110.25462 * 338.57255 * 5 4 2 7 7 N 1.46502 * 110.25505 * 216.65712 * 5 4 2 8 8 C 1.34772 * 120.00427 * 154.99607 * 7 5 4 9 9 O 1.21650 * 119.99907 * 0.02562 * 8 7 5 10 10 C 1.47178 * 120.00380 * 180.02562 * 8 7 5 11 11 C 1.35092 * 122.48902 * 180.02562 * 10 8 7 12 12 S 1.76191 * 108.21721 * 180.20601 * 11 10 8 13 13 C 1.76058 * 90.15807 * 359.70934 * 12 11 10 14 14 O 1.35501 * 125.17709 * 180.08619 * 13 12 11 15 15 N 1.29249 * 109.64013 * 0.29792 * 13 12 11 16 16 C 1.52526 * 105.41236 * 97.68537 * 5 4 2 17 17 C 1.46244 * 114.28012 * 270.59246 * 16 5 4 18 18 N 1.50169 * 107.52960 * 58.40516 * 17 16 5 19 19 C 1.36941 * 120.53315 * 109.56751 * 18 17 16 20 20 H 1.08000 * 119.99619 * 156.69990 * 19 18 17 21 21 C 1.38810 * 120.00022 * 336.70589 * 19 18 17 22 22 N 1.31622 * 119.99774 * 340.41426 * 21 19 18 23 23 Si 1.86796 * 120.00217 * 160.41933 * 21 19 18 24 24 H 1.48505 * 109.47176 * 89.99648 * 23 21 19 25 25 H 1.48496 * 109.47514 * 209.99762 * 23 21 19 26 26 H 1.48500 * 109.46902 * 329.99631 * 23 21 19 27 27 C 1.43428 * 118.93216 * 289.59335 * 18 17 16 28 28 H 1.09004 * 109.46932 * 300.34414 * 1 2 3 29 29 H 1.09000 * 109.47146 * 60.33643 * 1 2 3 30 30 H 1.08999 * 109.46976 * 180.33833 * 1 2 3 31 31 H 1.08994 * 109.46812 * 179.65881 * 3 2 1 32 32 H 1.09002 * 109.47274 * 299.66011 * 3 2 1 33 33 H 1.09000 * 109.46956 * 59.65826 * 3 2 1 34 34 H 1.09001 * 109.20465 * 320.99458 * 4 2 1 35 35 H 1.09000 * 109.17540 * 201.66019 * 4 2 1 36 36 H 0.96996 * 119.99354 * 335.00797 * 7 5 4 37 37 H 1.07994 * 125.89122 * 359.93867 * 11 10 8 38 38 H 0.96696 * 113.99661 * 270.23905 * 14 13 12 39 39 H 1.08999 * 108.52755 * 31.83509 * 16 5 4 40 40 H 1.09006 * 108.52312 * 149.35491 * 16 5 4 41 41 H 1.09005 * 109.84304 * 298.90807 * 17 16 5 42 42 H 1.08991 * 109.90439 * 177.95180 * 17 16 5 43 43 H 0.97006 * 119.99566 * 179.97438 * 22 21 19 44 44 H 1.09005 * 108.15796 * 329.84874 * 27 18 17 45 45 H 1.09000 * 108.16455 * 213.28469 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0344 1.4445 0.0000 4 6 2.0433 -0.7229 1.2694 5 6 2.0207 -2.2121 1.0812 6 1 1.3236 -2.4817 0.2879 7 7 1.6451 -2.8758 2.3322 8 6 1.0802 -4.0990 2.3029 9 8 0.8826 -4.6523 1.2377 10 6 0.7024 -4.7655 3.5595 11 6 0.1339 -5.9906 3.5887 12 16 -0.1643 -6.4196 5.2714 13 6 0.5249 -4.8847 5.7898 14 8 0.6433 -4.4771 7.0767 15 7 0.8965 -4.2040 4.7559 16 6 3.4446 -2.5927 0.6887 17 6 3.6999 -2.5624 -0.7510 18 7 3.4055 -1.1711 -1.2334 19 6 4.4212 -0.3432 -1.6313 20 1 4.2181 0.4741 -2.3074 21 6 5.7117 -0.5547 -1.1658 22 7 5.9103 -1.2701 -0.0790 23 14 7.1665 0.1762 -2.0817 24 1 7.4606 1.5291 -1.5445 25 1 8.3542 -0.6968 -1.9015 26 1 6.8412 0.2774 -3.5271 27 6 2.0435 -0.7231 -1.2700 28 1 -0.3633 0.5192 0.8869 29 1 -0.3633 0.5086 -0.8930 30 1 -0.3633 -1.0276 0.0061 31 1 3.1243 1.4487 0.0061 32 1 1.6741 1.9552 -0.8930 33 1 1.6641 1.9587 0.8869 34 1 1.4075 -0.4586 2.1144 35 1 3.0647 -0.4029 1.4754 36 1 1.8029 -2.4346 3.1815 37 1 -0.1015 -6.6000 2.7287 38 1 -0.1229 -3.9880 7.4064 39 1 4.1343 -1.9044 1.1772 40 1 3.6476 -3.5991 1.0551 41 1 3.0488 -3.2750 -1.2574 42 1 4.7430 -2.8095 -0.9481 43 1 6.8122 -1.4182 0.2461 44 1 1.4059 -1.5888 -1.4493 45 1 1.9316 -0.0448 -2.1159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089470677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:06 Heat of formation + Delta-G solvation = -22.276813 kcal Electronic energy + Delta-G solvation = -28415.990547 eV Core-core repulsion = 24560.867637 eV Total energy + Delta-G solvation = -3855.122910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67487 -40.58339 -39.49942 -38.06177 -36.26607 -35.96621 -33.29662 -32.35936 -31.08546 -29.20424 -28.03585 -27.29973 -26.62031 -25.06736 -23.94797 -22.83942 -21.57996 -21.07811 -20.45427 -19.46772 -18.89977 -18.54135 -17.62478 -17.22037 -16.88986 -16.69233 -16.13602 -15.90362 -15.59081 -15.30264 -15.23585 -15.11230 -14.71550 -14.42838 -14.02007 -13.83796 -13.52945 -13.25095 -13.10741 -13.03844 -12.88680 -12.86580 -12.64980 -12.51008 -12.36648 -12.26351 -11.94361 -11.71911 -11.59441 -11.42263 -11.14803 -11.12153 -10.98890 -10.79916 -10.68863 -10.46928 -10.08629 -9.80330 -8.61065 -7.77577 -5.17077 -0.67824 -0.10179 0.33352 0.76532 1.47986 1.51928 1.59252 2.12911 2.22285 2.47728 2.57486 3.35601 3.56286 3.62251 3.96799 4.01945 4.07467 4.11191 4.14104 4.42895 4.47770 4.53173 4.64450 4.76210 4.79528 4.89748 4.94503 4.95865 5.07310 5.12167 5.21737 5.26483 5.29920 5.34544 5.47539 5.52670 5.65211 5.68167 5.71073 5.79886 6.07607 6.12058 6.36191 6.46063 6.58718 7.12760 7.21045 7.94447 8.47021 9.27119 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.003056 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.539864 B = 9160.233135 C = 9737.613958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.091 4.091 5 C 0.162 3.838 6 H 0.077 0.923 7 N -0.693 5.693 8 C 0.585 3.415 9 O -0.568 6.568 10 C 0.006 3.994 11 C -0.170 4.170 12 S 0.179 5.821 13 C 0.254 3.746 14 O -0.434 6.434 15 N -0.489 5.489 16 C -0.117 4.117 17 C 0.175 3.825 18 N -0.595 5.595 19 C -0.245 4.245 20 H 0.064 0.936 21 C -0.042 4.042 22 N -0.917 5.917 23 Si 0.952 3.048 24 H -0.289 1.289 25 H -0.298 1.298 26 H -0.278 1.278 27 C 0.163 3.837 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.411 0.589 37 H 0.204 0.796 38 H 0.432 0.568 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.060 0.940 43 H 0.245 0.755 44 H 0.030 0.970 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.609 -6.442 14.184 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.129 4.129 5 C 0.057 3.943 6 H 0.095 0.905 7 N -0.342 5.342 8 C 0.369 3.631 9 O -0.448 6.448 10 C -0.126 4.126 11 C -0.312 4.312 12 S 0.428 5.572 13 C -0.066 4.066 14 O -0.245 6.245 15 N -0.216 5.216 16 C -0.157 4.157 17 C 0.051 3.949 18 N -0.316 5.316 19 C -0.375 4.375 20 H 0.082 0.918 21 C -0.238 4.238 22 N -0.564 5.564 23 Si 0.782 3.218 24 H -0.216 1.216 25 H -0.225 1.225 26 H -0.204 1.204 27 C 0.035 3.965 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.248 0.752 37 H 0.221 0.779 38 H 0.295 0.705 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.246 -7.428 14.150 22.788 hybrid contribution 1.361 1.168 -0.669 1.914 sum -14.885 -6.260 13.480 21.035 Atomic orbital electron populations 1.21757 0.93335 1.01154 1.02201 1.21852 0.95371 0.95724 0.95944 1.21643 1.00347 0.94992 1.00815 1.21625 1.00915 0.92396 0.97993 1.20200 0.95890 0.92877 0.85288 0.90529 1.45988 1.60143 1.17581 1.10528 1.17455 0.77285 0.81345 0.87010 1.90802 1.57128 1.65582 1.31270 1.19693 1.07179 0.95014 0.90700 1.27433 1.02549 0.98470 1.02749 1.85040 1.55521 1.20419 0.96223 1.25183 0.99582 0.93668 0.88187 1.84845 1.47596 1.74958 1.17114 1.66658 1.20766 1.35986 0.98194 1.21123 0.95926 0.99152 0.99451 1.19908 0.98832 0.84175 0.92023 1.44300 1.01998 1.09769 1.75579 1.19299 0.88091 1.10180 1.19969 0.91849 1.25443 1.00032 1.01332 0.96962 1.70119 1.19768 1.44984 1.21504 0.85516 0.80053 0.77335 0.78900 1.21579 1.22472 1.20362 1.20622 0.85263 0.95886 0.94772 0.91737 0.91917 0.93642 0.94685 0.92807 0.92567 0.91388 0.93296 0.75245 0.77942 0.70474 0.90432 0.96545 0.97213 0.92136 0.94602 0.95182 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 8.20 71.98 0.59 -2.95 16 2 C -0.09 -2.98 0.76 -50.90 -0.04 -3.02 16 3 C -0.12 -4.18 8.29 71.98 0.60 -3.58 16 4 C -0.09 -3.33 4.15 30.29 0.13 -3.20 16 5 C 0.16 6.22 2.16 43.91 0.09 6.32 16 6 H 0.08 3.17 5.16 -2.39 -0.01 3.16 16 7 N -0.69 -23.47 4.94 -451.22 -2.23 -25.70 16 8 C 0.58 19.94 7.79 86.59 0.67 20.61 16 9 O -0.57 -22.70 16.32 -4.19 -0.07 -22.76 16 10 C 0.01 0.15 6.67 40.50 0.27 0.42 16 11 C -0.17 -3.48 10.84 67.10 0.73 -2.75 16 12 S 0.18 2.42 23.42 -56.49 -1.32 1.10 16 13 C 0.25 4.50 8.88 130.62 1.16 5.66 16 14 O -0.43 -5.42 13.64 -88.02 -1.20 -6.62 16 15 N -0.49 -11.93 10.01 -304.24 -3.05 -14.98 16 16 C -0.12 -5.37 4.74 28.36 0.13 -5.24 16 17 C 0.17 8.72 5.24 83.58 0.44 9.15 16 18 N -0.60 -29.28 2.60 -707.82 -1.84 -31.12 16 19 C -0.25 -13.08 8.97 84.03 0.75 -12.32 16 20 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 21 C -0.04 -2.28 4.91 84.86 0.42 -1.87 16 22 N -0.92 -51.72 9.43 21.65 0.20 -51.52 16 23 Si 0.95 44.82 29.60 68.60 2.03 46.85 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C 0.16 6.74 4.00 87.60 0.35 7.09 16 28 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 31 H 0.03 1.47 7.47 -2.39 -0.02 1.45 16 32 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 35 H 0.05 2.14 6.65 -2.39 -0.02 2.13 16 36 H 0.41 12.64 8.00 -92.71 -0.74 11.90 16 37 H 0.20 3.69 8.01 -2.91 -0.02 3.67 16 38 H 0.43 0.43 9.06 -74.06 -0.67 -0.24 16 39 H 0.08 4.02 5.29 -2.39 -0.01 4.00 16 40 H 0.02 0.76 8.02 -2.38 -0.02 0.74 16 41 H 0.01 0.48 8.12 -2.38 -0.02 0.46 16 42 H 0.06 3.38 6.06 -2.39 -0.01 3.36 16 43 H 0.24 13.67 8.31 -92.70 -0.77 12.90 16 44 H 0.03 1.23 6.69 -2.38 -0.02 1.21 16 45 H 0.03 1.33 7.83 -2.39 -0.02 1.31 16 Total: -1.00 -68.04 367.22 -1.55 -69.59 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.37 Total: 20.85 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.29 Total: 14.32 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -6.91 Total: -123.32 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.27 Total: -29.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.32 Total: 1.10 kcal Total: -68.04 -1.55 -69.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089470677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.313 kcal (2) G-P(sol) polarization free energy of solvation -68.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds