Wall clock time and date at job start Tue Mar 31 2020 22:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48507 * 109.47547 * 270.00164 * 3 2 1 5 5 H 1.48502 * 109.47431 * 29.99949 * 3 2 1 6 6 H 1.48499 * 109.47338 * 150.00078 * 3 2 1 7 7 C 1.38812 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00349 * 157.22874 * 7 2 1 9 9 N 1.36935 * 119.99708 * 337.22460 * 7 2 1 10 10 C 1.46506 * 120.00275 * 326.29714 * 9 7 2 11 11 C 1.52991 * 109.47153 * 264.41539 * 10 9 7 12 12 O 1.42900 * 109.47336 * 64.99984 * 11 10 9 13 13 C 1.46499 * 119.99920 * 146.29643 * 9 7 2 14 14 C 1.53042 * 109.46018 * 60.00394 * 13 9 7 15 15 C 1.53190 * 109.31388 * 178.62924 * 14 13 9 16 16 N 1.46931 * 108.77643 * 54.63265 * 15 14 13 17 17 C 1.34770 * 120.62930 * 126.37021 * 16 15 14 18 18 O 1.21282 * 120.00463 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99688 * 179.97438 * 17 16 15 20 20 C 1.50708 * 109.47104 * 179.97438 * 19 17 16 21 21 C 1.33634 * 126.03517 * 90.00179 * 20 19 17 22 22 N 1.31785 * 114.49948 * 180.02562 * 21 20 19 23 23 C 1.29023 * 117.12443 * 359.97438 * 22 21 20 24 24 S 1.70986 * 110.16562 * 359.72398 * 23 22 21 25 25 C 1.46923 * 118.73484 * 306.64265 * 16 15 14 26 26 C 1.52760 * 109.01166 * 53.31350 * 25 16 15 27 27 H 0.97001 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46756 * 24.41671 * 10 9 7 29 29 H 1.09000 * 109.47245 * 144.40953 * 10 9 7 30 30 H 1.09005 * 109.47213 * 184.99646 * 11 10 9 31 31 H 1.09001 * 109.46968 * 304.99626 * 11 10 9 32 32 H 0.96697 * 113.99982 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.46020 * 179.97438 * 13 9 7 34 34 H 1.08996 * 109.49842 * 58.67595 * 14 13 9 35 35 H 1.09002 * 109.51685 * 298.59522 * 14 13 9 36 36 H 1.08999 * 109.58901 * 294.84795 * 15 14 13 37 37 H 1.08995 * 109.70195 * 174.48916 * 15 14 13 38 38 H 1.09006 * 109.46981 * 60.00382 * 19 17 16 39 39 H 1.09002 * 109.47198 * 299.99850 * 19 17 16 40 40 H 1.07998 * 122.75584 * 0.02562 * 21 20 19 41 41 H 1.08004 * 124.91919 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.58358 * 173.14856 * 25 16 15 43 43 H 1.09001 * 109.59126 * 293.56943 * 25 16 15 44 44 H 1.09004 * 109.56652 * 185.55290 * 26 25 16 45 45 H 1.08997 * 109.38859 * 65.50604 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0271 -1.2384 -0.3625 9 7 1.4057 -2.3420 0.4580 10 6 0.4398 -2.2676 1.5571 11 6 1.1488 -2.5638 2.8801 12 8 2.1060 -1.5370 3.1479 13 6 1.7248 -3.6359 -0.1504 14 6 3.2200 -3.9200 0.0103 15 6 3.5436 -5.2889 -0.5966 16 7 3.0707 -5.3133 -1.9875 17 6 3.9062 -5.6469 -2.9910 18 8 5.0607 -5.9301 -2.7502 19 6 3.4059 -5.6679 -4.4124 20 6 4.5287 -6.0690 -5.3343 21 6 4.8365 -7.3163 -5.7020 22 7 5.8665 -7.4067 -6.5190 23 6 6.4444 -6.3051 -6.8613 24 16 5.6623 -4.9754 -6.1238 25 6 1.6714 -4.9614 -2.2640 26 6 1.3672 -3.6015 -1.6380 27 1 -0.4850 0.8401 -0.0004 28 1 0.0065 -1.2680 1.5929 29 1 -0.3506 -3.0006 1.3964 30 1 0.4156 -2.5960 3.6860 31 1 1.6570 -3.5257 2.8125 32 1 2.5942 -1.6601 3.9735 33 1 1.1510 -4.4205 0.3430 34 1 3.4784 -3.9212 1.0692 35 1 3.7944 -3.1492 -0.5036 36 1 3.0409 -6.0697 -0.0260 37 1 4.6205 -5.4556 -0.5738 38 1 3.0483 -4.6753 -4.6864 39 1 2.5898 -6.3852 -4.4998 40 1 4.2862 -8.1795 -5.3579 41 1 7.2956 -6.2328 -7.5221 42 1 1.5137 -4.9096 -3.3414 43 1 1.0127 -5.7149 -1.8321 44 1 0.3069 -3.3761 -1.7522 45 1 1.9583 -2.8333 -2.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098399941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:38 Heat of formation + Delta-G solvation = -9.047422 kcal Electronic energy + Delta-G solvation = -27810.646847 eV Core-core repulsion = 23956.097606 eV Total energy + Delta-G solvation = -3854.549240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.25153 -39.46496 -37.61965 -36.17845 -34.64177 -33.13038 -31.98042 -30.71789 -30.35199 -28.09871 -27.51622 -25.16288 -24.48169 -23.15966 -22.71052 -20.92830 -20.29444 -19.90939 -18.87508 -18.07119 -17.27112 -16.60235 -16.24090 -16.02892 -15.40216 -15.07841 -14.91795 -14.43046 -14.37487 -14.06005 -13.76832 -13.72824 -13.40406 -13.32078 -13.03549 -13.00462 -12.56331 -12.37087 -12.13474 -11.86090 -11.58663 -11.33432 -11.18458 -10.95251 -10.78284 -10.66325 -10.53554 -10.09377 -9.96661 -9.88583 -9.80609 -9.77558 -9.49567 -9.31034 -9.10686 -9.00948 -8.44352 -8.37845 -6.57886 -5.73819 -3.23154 0.57898 1.24995 1.64396 2.66756 2.71443 3.18093 3.42052 3.49832 3.56881 4.19509 4.50954 4.54890 4.63457 4.88566 5.09726 5.10495 5.13718 5.25574 5.25751 5.39448 5.49322 5.49778 5.57960 5.67901 5.76155 5.93477 5.97821 6.01244 6.05467 6.09942 6.23559 6.36578 6.43002 6.59224 6.65541 6.77367 6.80039 7.06247 7.12416 7.53190 7.56728 7.68105 7.87976 8.24768 8.43543 8.60944 9.23271 9.89014 10.41342 11.29204 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002931 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.708834 B = 9550.009457 C =10429.699167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.572 5.572 10 C 0.141 3.859 11 C 0.059 3.941 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.139 4.139 15 C 0.115 3.885 16 N -0.602 5.602 17 C 0.515 3.485 18 O -0.541 6.541 19 C -0.066 4.066 20 C -0.193 4.193 21 C 0.039 3.961 22 N -0.471 5.471 23 C 0.009 3.991 24 S 0.140 5.860 25 C 0.105 3.895 26 C -0.137 4.137 27 H 0.251 0.749 28 H 0.108 0.892 29 H 0.035 0.965 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.349 0.651 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.173 0.827 41 H 0.197 0.803 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -12.283 -7.235 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.185 4.185 3 Si 0.725 3.275 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.074 0.926 9 N -0.290 5.290 10 C 0.014 3.986 11 C -0.021 4.021 12 O -0.345 6.345 13 C 0.070 3.930 14 C -0.179 4.179 15 C -0.008 4.008 16 N -0.336 5.336 17 C 0.302 3.698 18 O -0.418 6.418 19 C -0.108 4.108 20 C -0.315 4.315 21 C -0.112 4.112 22 N -0.185 5.185 23 C -0.288 4.288 24 S 0.392 5.608 25 C -0.018 4.018 26 C -0.177 4.177 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.192 0.808 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.190 0.810 41 H 0.214 0.786 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.241 -11.484 -7.958 14.601 hybrid contribution 0.144 -0.038 0.995 1.006 sum 4.386 -11.522 -6.962 14.159 Atomic orbital electron populations 1.69963 1.05506 1.25441 1.52957 1.24910 0.94853 0.98358 1.00388 0.86432 0.79793 0.84033 0.77219 1.21863 1.21780 1.20466 1.18760 0.94250 0.85657 1.37525 0.92588 1.43748 1.49107 1.01647 1.34514 1.21066 0.90042 1.04026 0.83449 1.23092 0.90436 0.89310 0.99272 1.86853 1.55288 1.49105 1.43263 1.20298 0.92370 0.89066 0.91305 1.22359 1.00154 0.94930 1.00448 1.21678 1.00593 0.98308 0.80219 1.48136 1.11445 1.66835 1.07141 1.20307 0.85778 0.77169 0.86551 1.90698 1.17681 1.49081 1.84388 1.20113 0.95420 1.04854 0.90396 1.25354 1.03693 0.96348 1.06097 1.21641 0.95567 0.96601 0.97402 1.66297 1.08719 1.29697 1.13764 1.28315 1.04850 0.90711 1.04927 1.84115 1.24229 1.12782 1.39649 1.21870 0.80882 0.98455 1.00636 1.22261 1.02499 0.94286 0.98652 0.93861 0.87458 0.94690 0.96305 0.96081 0.80793 0.93519 0.91491 0.91350 0.92136 0.89778 0.87280 0.86748 0.81043 0.78613 0.90552 0.91620 0.90740 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.36 55.49 0.63 -24.27 16 2 C 0.01 0.37 4.90 -17.43 -0.09 0.28 16 3 Si 0.89 22.00 29.61 -169.99 -5.03 16.96 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.02 8.06 -15.06 -0.12 -6.14 16 8 H 0.06 1.50 6.87 -52.49 -0.36 1.14 16 9 N -0.57 -12.95 2.35 -165.61 -0.39 -13.34 16 10 C 0.14 3.11 5.57 -4.04 -0.02 3.09 16 11 C 0.06 1.12 7.39 37.15 0.27 1.39 16 12 O -0.54 -11.15 13.40 -35.23 -0.47 -11.63 16 13 C 0.18 3.26 2.60 -67.89 -0.18 3.08 16 14 C -0.14 -2.40 5.30 -26.61 -0.14 -2.55 16 15 C 0.11 1.69 6.44 -3.71 -0.02 1.67 16 16 N -0.60 -8.38 2.98 -173.03 -0.52 -8.90 16 17 C 0.52 7.37 7.69 -10.99 -0.08 7.29 16 18 O -0.54 -9.68 15.45 5.56 0.09 -9.59 16 19 C -0.07 -0.70 4.58 -29.03 -0.13 -0.83 16 20 C -0.19 -2.27 5.09 -35.92 -0.18 -2.45 16 21 C 0.04 0.47 11.25 -19.18 -0.22 0.25 16 22 N -0.47 -5.95 10.54 -15.75 -0.17 -6.12 16 23 C 0.01 0.09 12.23 51.58 0.63 0.73 16 24 S 0.14 1.51 23.22 -107.50 -2.50 -0.98 16 25 C 0.10 1.29 6.31 -3.93 -0.02 1.27 16 26 C -0.14 -2.30 5.29 -26.83 -0.14 -2.44 16 27 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.11 2.80 5.35 -51.93 -0.28 2.52 16 29 H 0.03 0.71 8.04 -51.93 -0.42 0.30 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.35 5.21 9.12 45.56 0.42 5.63 16 33 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.37 7.03 -51.93 -0.37 1.00 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.33 7.00 -51.93 -0.36 0.97 16 38 H 0.11 1.05 7.68 -51.93 -0.40 0.65 16 39 H 0.11 0.89 7.95 -51.93 -0.41 0.47 16 40 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.20 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.08 0.75 5.94 -51.93 -0.31 0.44 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.07 1.40 7.71 -51.93 -0.40 1.00 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -33.27 376.77 -8.94 -42.21 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.81 Total: 5.34 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.45 Total: 4.63 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.44 Total: -52.62 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.39 Total: -21.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.96 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.50 Total: -0.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.27 -8.94 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098399941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.164 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds