Wall clock time and date at job start Tue Mar 31 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48507 * 109.47547 * 270.00164 * 3 2 1 5 5 H 1.48502 * 109.47431 * 29.99949 * 3 2 1 6 6 H 1.48499 * 109.47338 * 150.00078 * 3 2 1 7 7 C 1.38812 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00349 * 157.22874 * 7 2 1 9 9 N 1.36935 * 119.99708 * 337.22460 * 7 2 1 10 10 C 1.46506 * 120.00275 * 326.29714 * 9 7 2 11 11 C 1.52991 * 109.47153 * 264.41539 * 10 9 7 12 12 O 1.42900 * 109.47336 * 64.99984 * 11 10 9 13 13 C 1.46499 * 119.99920 * 146.29643 * 9 7 2 14 14 C 1.53042 * 109.46018 * 60.00394 * 13 9 7 15 15 C 1.53190 * 109.31388 * 178.62924 * 14 13 9 16 16 N 1.46931 * 108.77643 * 54.63265 * 15 14 13 17 17 C 1.34770 * 120.62930 * 126.37021 * 16 15 14 18 18 O 1.21282 * 120.00463 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99688 * 179.97438 * 17 16 15 20 20 C 1.50708 * 109.47104 * 179.97438 * 19 17 16 21 21 C 1.33634 * 126.03517 * 90.00179 * 20 19 17 22 22 N 1.31785 * 114.49948 * 180.02562 * 21 20 19 23 23 C 1.29023 * 117.12443 * 359.97438 * 22 21 20 24 24 S 1.70986 * 110.16562 * 359.72398 * 23 22 21 25 25 C 1.46923 * 118.73484 * 306.64265 * 16 15 14 26 26 C 1.52760 * 109.01166 * 53.31350 * 25 16 15 27 27 H 0.97001 * 119.99893 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46756 * 24.41671 * 10 9 7 29 29 H 1.09000 * 109.47245 * 144.40953 * 10 9 7 30 30 H 1.09005 * 109.47213 * 184.99646 * 11 10 9 31 31 H 1.09001 * 109.46968 * 304.99626 * 11 10 9 32 32 H 0.96697 * 113.99982 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.46020 * 179.97438 * 13 9 7 34 34 H 1.08996 * 109.49842 * 58.67595 * 14 13 9 35 35 H 1.09002 * 109.51685 * 298.59522 * 14 13 9 36 36 H 1.08999 * 109.58901 * 294.84795 * 15 14 13 37 37 H 1.08995 * 109.70195 * 174.48916 * 15 14 13 38 38 H 1.09006 * 109.46981 * 60.00382 * 19 17 16 39 39 H 1.09002 * 109.47198 * 299.99850 * 19 17 16 40 40 H 1.07998 * 122.75584 * 0.02562 * 21 20 19 41 41 H 1.08004 * 124.91919 * 180.02562 * 23 22 21 42 42 H 1.09007 * 109.58358 * 173.14856 * 25 16 15 43 43 H 1.09001 * 109.59126 * 293.56943 * 25 16 15 44 44 H 1.09004 * 109.56652 * 185.55290 * 26 25 16 45 45 H 1.08997 * 109.38859 * 65.50604 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0271 -1.2384 -0.3625 9 7 1.4057 -2.3420 0.4580 10 6 0.4398 -2.2676 1.5571 11 6 1.1488 -2.5638 2.8801 12 8 2.1060 -1.5370 3.1479 13 6 1.7248 -3.6359 -0.1504 14 6 3.2200 -3.9200 0.0103 15 6 3.5436 -5.2889 -0.5966 16 7 3.0707 -5.3133 -1.9875 17 6 3.9062 -5.6469 -2.9910 18 8 5.0607 -5.9301 -2.7502 19 6 3.4059 -5.6679 -4.4124 20 6 4.5287 -6.0690 -5.3343 21 6 4.8365 -7.3163 -5.7020 22 7 5.8665 -7.4067 -6.5190 23 6 6.4444 -6.3051 -6.8613 24 16 5.6623 -4.9754 -6.1238 25 6 1.6714 -4.9614 -2.2640 26 6 1.3672 -3.6015 -1.6380 27 1 -0.4850 0.8401 -0.0004 28 1 0.0065 -1.2680 1.5929 29 1 -0.3506 -3.0006 1.3964 30 1 0.4156 -2.5960 3.6860 31 1 1.6570 -3.5257 2.8125 32 1 2.5942 -1.6601 3.9735 33 1 1.1510 -4.4205 0.3430 34 1 3.4784 -3.9212 1.0692 35 1 3.7944 -3.1492 -0.5036 36 1 3.0409 -6.0697 -0.0260 37 1 4.6205 -5.4556 -0.5738 38 1 3.0483 -4.6753 -4.6864 39 1 2.5898 -6.3852 -4.4998 40 1 4.2862 -8.1795 -5.3579 41 1 7.2956 -6.2328 -7.5221 42 1 1.5137 -4.9096 -3.3414 43 1 1.0127 -5.7149 -1.8321 44 1 0.3069 -3.3761 -1.7522 45 1 1.9583 -2.8333 -2.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098399941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:37 Heat of formation + Delta-G solvation = -32.787596 kcal Electronic energy + Delta-G solvation = -27811.676298 eV Core-core repulsion = 23956.097606 eV Total energy + Delta-G solvation = -3855.578691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33005 -40.39940 -39.04924 -37.64503 -36.21562 -34.18035 -33.56892 -32.01729 -31.88570 -29.50171 -28.69775 -26.56843 -25.66673 -24.57864 -23.95770 -22.35036 -21.61845 -21.05484 -20.05947 -18.95910 -18.51365 -18.18742 -17.83490 -17.03543 -16.75636 -16.46105 -16.10429 -16.04833 -15.60714 -15.32115 -15.00973 -14.87196 -14.66981 -14.56698 -14.31669 -14.18502 -13.86679 -13.72810 -13.29775 -13.16661 -13.05974 -12.97738 -12.72558 -12.54228 -12.37297 -12.15209 -12.06099 -11.80584 -11.58396 -11.50243 -11.14079 -10.93610 -10.63426 -10.62847 -10.35240 -10.19304 -9.85808 -9.60812 -8.47019 -7.73817 -5.24099 -0.24977 0.44695 0.82235 1.42695 1.47524 1.56362 1.59978 1.82407 2.14641 2.57550 3.36810 3.42954 3.54877 3.61910 3.76230 3.84807 4.03456 4.11743 4.19341 4.28510 4.38328 4.39120 4.48682 4.52697 4.58636 4.65649 4.72579 4.77172 4.84506 4.86050 4.92440 4.95580 5.10880 5.18463 5.19208 5.23594 5.48146 5.63983 5.70202 5.77182 5.88957 6.44548 6.55567 6.73394 7.15769 7.20836 7.30100 8.01789 8.47302 9.23951 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002931 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.708834 B = 9550.009457 C =10429.699167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.031 4.031 3 Si 0.936 3.064 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.218 4.218 8 H 0.039 0.961 9 N -0.584 5.584 10 C 0.135 3.865 11 C 0.067 3.933 12 O -0.578 6.578 13 C 0.172 3.828 14 C -0.125 4.125 15 C 0.123 3.877 16 N -0.604 5.604 17 C 0.512 3.488 18 O -0.582 6.582 19 C -0.060 4.060 20 C -0.208 4.208 21 C 0.031 3.969 22 N -0.501 5.501 23 C 0.017 3.983 24 S 0.130 5.870 25 C 0.114 3.886 26 C -0.128 4.128 27 H 0.245 0.755 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.374 0.626 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.187 0.813 41 H 0.228 0.772 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -14.382 -7.676 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.227 4.227 3 Si 0.767 3.233 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.057 0.943 9 N -0.304 5.304 10 C 0.008 3.992 11 C -0.013 4.013 12 O -0.382 6.382 13 C 0.066 3.934 14 C -0.165 4.165 15 C -0.001 4.001 16 N -0.336 5.336 17 C 0.301 3.699 18 O -0.462 6.462 19 C -0.101 4.101 20 C -0.330 4.330 21 C -0.120 4.120 22 N -0.214 5.214 23 C -0.280 4.280 24 S 0.383 5.617 25 C -0.009 4.009 26 C -0.168 4.168 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.220 0.780 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.169 0.831 40 H 0.204 0.796 41 H 0.244 0.756 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.875 -13.600 -8.389 16.443 hybrid contribution 0.336 0.580 1.171 1.349 sum 4.211 -13.020 -7.218 15.471 Atomic orbital electron populations 1.70057 1.06107 1.25165 1.54942 1.25326 0.95384 1.00168 1.01838 0.85776 0.78497 0.82060 0.77001 1.21587 1.22240 1.21149 1.18725 0.93472 0.87047 1.35684 0.94317 1.43905 1.48931 1.02226 1.35294 1.21033 0.90714 1.02313 0.85112 1.22925 0.90743 0.89449 0.98193 1.86772 1.56075 1.50129 1.45270 1.20520 0.93037 0.87526 0.92352 1.22159 0.98834 0.95592 0.99904 1.21528 1.00270 0.97063 0.81190 1.48221 1.12110 1.66530 1.06766 1.20936 0.85119 0.76031 0.87827 1.90682 1.19463 1.50935 1.85147 1.20190 0.95947 1.06605 0.87391 1.25517 1.04322 0.96425 1.06708 1.21947 0.95574 0.97273 0.97227 1.66341 1.09599 1.30629 1.14857 1.28871 1.04929 0.89903 1.04290 1.84147 1.24504 1.13235 1.39801 1.21923 0.80263 0.96146 1.02539 1.22086 1.01020 0.96276 0.97466 0.94535 0.91380 0.93200 0.93753 0.94300 0.78030 0.91272 0.91999 0.94984 0.89417 0.91087 0.86094 0.83131 0.79627 0.75609 0.87352 0.88665 0.91863 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.13 11.36 21.65 0.25 -51.89 16 2 C -0.03 -1.72 4.90 84.86 0.42 -1.30 16 3 Si 0.94 46.18 29.61 68.60 2.03 48.22 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.22 -11.54 8.06 84.03 0.68 -10.86 16 8 H 0.04 2.16 6.87 -2.91 -0.02 2.14 16 9 N -0.58 -26.39 2.35 -677.88 -1.59 -27.98 16 10 C 0.13 5.87 5.57 86.38 0.48 6.35 16 11 C 0.07 2.40 7.39 71.98 0.53 2.93 16 12 O -0.58 -23.15 13.40 -148.98 -2.00 -25.15 16 13 C 0.17 6.09 2.60 45.02 0.12 6.21 16 14 C -0.12 -4.24 5.30 30.67 0.16 -4.08 16 15 C 0.12 3.39 6.44 86.36 0.56 3.94 16 16 N -0.60 -15.32 2.98 -819.74 -2.44 -17.76 16 17 C 0.51 13.62 7.69 87.66 0.67 14.30 16 18 O -0.58 -20.32 15.45 -3.04 -0.05 -20.37 16 19 C -0.06 -1.10 4.58 29.11 0.13 -0.96 16 20 C -0.21 -4.51 5.09 24.64 0.13 -4.39 16 21 C 0.03 0.68 11.25 83.65 0.94 1.62 16 22 N -0.50 -11.91 10.54 -203.74 -2.15 -14.05 16 23 C 0.02 0.32 12.23 130.66 1.60 1.92 16 24 S 0.13 2.68 23.22 -56.49 -1.31 1.37 16 25 C 0.11 2.41 6.31 86.22 0.54 2.95 16 26 C -0.13 -4.14 5.29 30.53 0.16 -3.98 16 27 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.07 3.59 5.35 -2.39 -0.01 3.58 16 29 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.37 10.60 9.12 -74.06 -0.68 9.92 16 33 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.03 1.30 7.03 -2.39 -0.02 1.29 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.19 7.00 -2.39 -0.02 2.17 16 38 H 0.12 1.96 7.68 -2.38 -0.02 1.95 16 39 H 0.15 1.65 7.95 -2.39 -0.02 1.64 16 40 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.23 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.11 1.66 5.94 -2.38 -0.01 1.64 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.04 1.47 7.71 -2.39 -0.02 1.45 16 Total: -1.00 -74.72 376.77 0.20 -74.53 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.34 Total: 18.45 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.12 Total: 14.65 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -5.93 Total: -111.68 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -2.04 Total: -45.52 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.37 kcal Total: -74.72 0.20 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098399941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.739 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds