Wall clock time and date at job start Tue Mar 31 2020 22:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.46895 * 59.99879 * 3 2 1 7 7 C 1.38803 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99820 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99872 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46842 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00509 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99388 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99306 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.67288 * 37.04967 * 14 13 11 16 16 C 1.54842 * 110.60781 * 159.99112 * 14 13 11 17 17 C 1.55846 * 103.51932 * 118.51033 * 16 14 13 18 18 H 1.08998 * 115.58546 * 158.88788 * 17 16 14 19 19 C 1.55852 * 105.03149 * 287.51543 * 17 16 14 20 20 C 1.56675 * 102.66726 * 72.20964 * 19 17 16 21 21 C 1.55843 * 110.61465 * 274.08752 * 14 13 11 22 22 H 1.09002 * 115.57559 * 82.61073 * 21 14 13 23 23 N 1.50652 * 101.02840 * 208.49925 * 21 14 13 24 24 C 1.46897 * 111.00369 * 297.65328 * 23 21 14 25 25 H 1.09007 * 110.42923 * 52.78582 * 24 23 21 26 26 C 1.54627 * 110.48799 * 290.10403 * 24 23 21 27 27 C 1.54482 * 101.76034 * 266.11918 * 26 24 23 28 28 N 1.46768 * 105.47508 * 334.57911 * 27 26 24 29 29 C 1.34423 * 111.29647 * 17.02556 * 28 27 26 30 30 O 1.21283 * 124.94077 * 179.62792 * 29 28 27 31 31 H 0.97003 * 120.00275 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46864 * 59.99829 * 10 9 7 33 33 H 1.08994 * 109.46953 * 299.99990 * 10 9 7 34 34 H 0.96997 * 120.00729 * 359.97438 * 13 11 10 35 35 H 1.09003 * 110.61323 * 237.01426 * 16 14 13 36 36 H 1.08995 * 110.61504 * 359.84611 * 16 14 13 37 37 H 1.08997 * 110.61195 * 190.23115 * 19 17 16 38 38 H 1.08991 * 110.61256 * 313.06165 * 19 17 16 39 39 H 1.09007 * 110.33879 * 241.19728 * 20 19 17 40 40 H 1.08998 * 110.73820 * 118.31893 * 20 19 17 41 41 H 1.08998 * 110.97005 * 24.23342 * 26 24 23 42 42 H 1.08995 * 110.96689 * 147.99935 * 26 24 23 43 43 H 1.09000 * 110.24350 * 215.58218 * 27 26 24 44 44 H 1.08993 * 110.24616 * 93.58435 * 27 26 24 45 45 H 0.96998 * 124.35014 * 196.99185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5024 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 2.3303 -7.7151 -0.0003 15 1 1.4329 -7.7899 -0.6144 16 6 3.4143 -8.7030 -0.4967 17 6 3.6351 -9.6455 0.7247 18 1 4.0782 -10.6150 0.4972 19 6 4.4060 -8.7815 1.7678 20 6 3.3047 -7.7876 2.2719 21 6 2.0410 -8.1926 1.4547 22 1 1.0814 -7.8837 1.8693 23 7 2.2504 -9.6782 1.3175 24 6 1.2873 -10.2606 0.3736 25 1 1.3110 -9.7231 -0.5745 26 6 -0.1376 -10.2423 0.9739 27 6 -0.2285 -11.6461 1.6121 28 7 0.7135 -12.4812 0.8574 29 6 1.5799 -11.7290 0.1572 30 8 2.4667 -12.1642 -0.5465 31 1 -0.4851 0.8400 0.0004 32 1 3.1244 -3.7313 0.8895 33 1 3.1244 -3.7313 -0.8905 34 1 3.8009 -6.1835 -0.0014 35 1 3.0541 -9.2676 -1.3567 36 1 4.3329 -8.1717 -0.7453 37 1 4.7672 -9.4018 2.5881 38 1 5.2339 -8.2549 1.2931 39 1 3.5919 -6.7597 2.0502 40 1 3.1286 -7.9161 3.3399 41 1 -0.2323 -9.4631 1.7301 42 1 -0.8882 -10.1194 0.1931 43 1 -1.2407 -12.0390 1.5168 44 1 0.0628 -11.6029 2.6615 45 1 0.7113 -13.4511 0.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108947529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:06 Heat of formation + Delta-G solvation = -34.964419 kcal Electronic energy + Delta-G solvation = -27804.637386 eV Core-core repulsion = 23948.964301 eV Total energy + Delta-G solvation = -3855.673086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.83926 -39.96224 -38.58761 -36.62224 -34.11142 -32.57750 -32.44956 -30.46235 -29.89384 -29.33390 -27.82126 -26.61151 -25.48952 -22.60121 -22.21751 -21.40141 -20.75682 -19.72038 -19.35838 -17.90737 -17.71095 -17.38546 -16.57943 -16.25928 -15.76994 -15.32014 -15.14683 -14.82493 -14.63880 -14.27417 -14.13332 -13.86331 -13.52936 -13.16633 -13.13733 -12.94098 -12.83367 -12.49209 -12.36821 -12.24112 -12.00115 -11.85545 -11.74779 -11.47880 -11.10920 -11.08752 -11.04207 -10.99144 -10.77236 -10.35943 -10.03876 -9.82796 -9.52159 -9.43468 -9.33619 -9.09446 -8.56791 -8.26128 -6.52376 -6.24154 -3.94559 2.20577 2.98337 3.02213 3.03006 3.20002 3.26430 3.30720 3.56692 3.74884 3.90770 4.13938 4.18208 4.32092 4.40734 4.53781 4.60530 4.83007 4.87934 4.89438 5.02128 5.09804 5.11349 5.11955 5.18895 5.21539 5.28030 5.40336 5.44211 5.59057 5.61925 5.65169 5.72724 5.82718 5.86226 5.90027 5.97855 6.01244 6.11144 6.24942 6.47239 6.56513 6.61759 6.68285 7.57786 7.65268 7.94222 8.33212 8.56156 9.21601 10.83304 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.002410 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.121803 B =11616.740008 C =12152.215476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.725 5.725 14 C 0.117 3.883 15 H 0.091 0.909 16 C -0.160 4.160 17 C 0.048 3.952 18 H 0.120 0.880 19 C -0.115 4.115 20 C -0.114 4.114 21 C 0.041 3.959 22 H 0.122 0.878 23 N -0.472 5.472 24 C 0.024 3.976 25 H 0.088 0.912 26 C -0.129 4.129 27 C 0.108 3.892 28 N -0.727 5.727 29 C 0.535 3.465 30 O -0.534 6.534 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -23.677 4.195 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.379 5.379 14 C 0.010 3.990 15 H 0.109 0.891 16 C -0.199 4.199 17 C -0.060 4.060 18 H 0.137 0.863 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.068 4.068 22 H 0.140 0.860 23 N -0.197 5.197 24 C -0.088 4.088 25 H 0.106 0.894 26 C -0.167 4.167 27 C -0.017 4.017 28 N -0.382 5.382 29 C 0.320 3.680 30 O -0.409 6.409 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.246 -24.368 4.351 24.965 hybrid contribution 2.324 1.380 -0.829 2.827 sum 5.570 -22.988 3.522 23.914 Atomic orbital electron populations 1.70022 1.05948 1.27362 1.46956 1.24994 0.95028 0.99046 0.94534 0.86120 0.79594 0.81889 0.77916 1.19620 1.20571 1.20547 1.22905 0.94929 0.91636 1.58831 0.90897 1.85379 1.04869 0.96332 1.96712 1.23533 1.06616 0.95390 1.04904 1.20337 0.86576 0.86262 0.74905 1.90690 1.15318 1.85568 1.47436 1.46049 1.09770 1.04749 1.77371 1.22563 0.97338 0.81842 0.97288 0.89077 1.23522 0.99542 0.97501 0.99365 1.24506 0.90244 0.98591 0.92685 0.86262 1.22941 0.96950 0.97154 0.98226 1.22864 0.93341 0.99263 0.99702 1.24863 0.99997 0.86218 0.95687 0.86011 1.67786 1.01200 1.12853 1.37873 1.22642 0.94571 0.93739 0.97896 0.89417 1.22702 0.94787 0.97410 1.01760 1.22041 0.93002 0.90428 0.96209 1.46144 1.34496 1.09414 1.48154 1.20599 0.80414 0.88978 0.78056 1.90737 1.32352 1.78431 1.39389 0.92229 0.89224 0.89293 0.76679 0.90265 0.89932 0.91097 0.90979 0.90393 0.90976 0.88255 0.89436 0.90340 0.90524 0.75241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.99 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 11 C 0.53 9.29 7.84 -10.98 -0.09 9.20 16 12 O -0.52 -10.93 15.59 5.56 0.09 -10.85 16 13 N -0.72 -8.95 3.63 -51.40 -0.19 -9.13 16 14 C 0.12 1.31 2.26 -65.44 -0.15 1.17 16 15 H 0.09 1.20 6.82 -51.93 -0.35 0.85 16 16 C -0.16 -1.52 5.38 -24.24 -0.13 -1.65 16 17 C 0.05 0.45 4.37 -62.55 -0.27 0.18 16 18 H 0.12 1.26 7.20 -51.93 -0.37 0.89 16 19 C -0.11 -0.96 6.57 -23.23 -0.15 -1.11 16 20 C -0.11 -1.08 6.37 -23.23 -0.15 -1.23 16 21 C 0.04 0.43 4.34 -62.56 -0.27 0.16 16 22 H 0.12 1.39 7.18 -51.93 -0.37 1.02 16 23 N -0.47 -4.55 5.40 -197.82 -1.07 -5.61 16 24 C 0.02 0.23 2.11 -67.73 -0.14 0.08 16 25 H 0.09 0.91 4.97 -51.92 -0.26 0.65 16 26 C -0.13 -0.94 6.71 -25.10 -0.17 -1.11 16 27 C 0.11 0.62 7.78 -3.12 -0.02 0.60 16 28 N -0.73 -5.51 6.24 -59.20 -0.37 -5.88 16 29 C 0.53 5.72 7.58 -10.86 -0.08 5.64 16 30 O -0.53 -7.50 17.00 5.55 0.09 -7.41 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.40 3.91 8.02 -40.82 -0.33 3.58 16 35 H 0.08 0.81 7.31 -51.93 -0.38 0.43 16 36 H 0.08 0.69 7.33 -51.93 -0.38 0.31 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.52 7.81 -51.93 -0.41 0.12 16 39 H 0.08 0.78 6.49 -51.92 -0.34 0.45 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.74 6.77 -51.93 -0.35 0.39 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.41 2.44 8.96 -40.82 -0.37 2.07 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -35.03 366.97 -10.03 -45.06 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.41 Total: 4.58 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.21 Total: -3.55 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.89 Total: -45.74 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.03 -10.03 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108947529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.099 kcal (2) G-P(sol) polarization free energy of solvation -35.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds