Wall clock time and date at job start Tue Mar 31 2020 22:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46901 * 300.00183 * 3 2 1 6 6 H 1.48500 * 109.46895 * 59.99879 * 3 2 1 7 7 C 1.38803 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99820 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99872 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46842 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00509 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99388 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99306 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.67288 * 37.04967 * 14 13 11 16 16 C 1.54842 * 110.60781 * 159.99112 * 14 13 11 17 17 C 1.55846 * 103.51932 * 118.51033 * 16 14 13 18 18 H 1.08998 * 115.58546 * 158.88788 * 17 16 14 19 19 C 1.55852 * 105.03149 * 287.51543 * 17 16 14 20 20 C 1.56675 * 102.66726 * 72.20964 * 19 17 16 21 21 C 1.55843 * 110.61465 * 274.08752 * 14 13 11 22 22 H 1.09002 * 115.57559 * 82.61073 * 21 14 13 23 23 N 1.50652 * 101.02840 * 208.49925 * 21 14 13 24 24 C 1.46897 * 111.00369 * 297.65328 * 23 21 14 25 25 H 1.09007 * 110.42923 * 52.78582 * 24 23 21 26 26 C 1.54627 * 110.48799 * 290.10403 * 24 23 21 27 27 C 1.54482 * 101.76034 * 266.11918 * 26 24 23 28 28 N 1.46768 * 105.47508 * 334.57911 * 27 26 24 29 29 C 1.34423 * 111.29647 * 17.02556 * 28 27 26 30 30 O 1.21283 * 124.94077 * 179.62792 * 29 28 27 31 31 H 0.97003 * 120.00275 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46864 * 59.99829 * 10 9 7 33 33 H 1.08994 * 109.46953 * 299.99990 * 10 9 7 34 34 H 0.96997 * 120.00729 * 359.97438 * 13 11 10 35 35 H 1.09003 * 110.61323 * 237.01426 * 16 14 13 36 36 H 1.08995 * 110.61504 * 359.84611 * 16 14 13 37 37 H 1.08997 * 110.61195 * 190.23115 * 19 17 16 38 38 H 1.08991 * 110.61256 * 313.06165 * 19 17 16 39 39 H 1.09007 * 110.33879 * 241.19728 * 20 19 17 40 40 H 1.08998 * 110.73820 * 118.31893 * 20 19 17 41 41 H 1.08998 * 110.97005 * 24.23342 * 26 24 23 42 42 H 1.08995 * 110.96689 * 147.99935 * 26 24 23 43 43 H 1.09000 * 110.24350 * 215.58218 * 27 26 24 44 44 H 1.08993 * 110.24616 * 93.58435 * 27 26 24 45 45 H 0.96998 * 124.35014 * 196.99185 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7910 -5.5024 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 2.3303 -7.7151 -0.0003 15 1 1.4329 -7.7899 -0.6144 16 6 3.4143 -8.7030 -0.4967 17 6 3.6351 -9.6455 0.7247 18 1 4.0782 -10.6150 0.4972 19 6 4.4060 -8.7815 1.7678 20 6 3.3047 -7.7876 2.2719 21 6 2.0410 -8.1926 1.4547 22 1 1.0814 -7.8837 1.8693 23 7 2.2504 -9.6782 1.3175 24 6 1.2873 -10.2606 0.3736 25 1 1.3110 -9.7231 -0.5745 26 6 -0.1376 -10.2423 0.9739 27 6 -0.2285 -11.6461 1.6121 28 7 0.7135 -12.4812 0.8574 29 6 1.5799 -11.7290 0.1572 30 8 2.4667 -12.1642 -0.5465 31 1 -0.4851 0.8400 0.0004 32 1 3.1244 -3.7313 0.8895 33 1 3.1244 -3.7313 -0.8905 34 1 3.8009 -6.1835 -0.0014 35 1 3.0541 -9.2676 -1.3567 36 1 4.3329 -8.1717 -0.7453 37 1 4.7672 -9.4018 2.5881 38 1 5.2339 -8.2549 1.2931 39 1 3.5919 -6.7597 2.0502 40 1 3.1286 -7.9161 3.3399 41 1 -0.2323 -9.4631 1.7301 42 1 -0.8882 -10.1194 0.1931 43 1 -1.2407 -12.0390 1.5168 44 1 0.0628 -11.6029 2.6615 45 1 0.7113 -13.4511 0.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108947529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:05 Heat of formation + Delta-G solvation = -62.619965 kcal Electronic energy + Delta-G solvation = -27805.836621 eV Core-core repulsion = 23948.964301 eV Total energy + Delta-G solvation = -3856.872320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.67849 -40.88061 -39.83960 -37.42604 -35.30499 -34.56982 -33.32097 -31.57006 -30.91852 -30.04197 -28.93276 -27.64328 -27.33430 -23.33457 -23.02842 -22.22418 -21.94034 -20.53897 -20.26677 -19.79439 -18.47757 -18.25819 -17.88549 -17.23702 -16.89568 -16.85554 -16.25880 -16.17164 -15.81498 -15.61313 -14.93222 -14.88751 -14.65273 -14.53697 -14.19506 -13.94593 -13.75638 -13.51733 -13.47772 -13.14403 -13.08602 -12.94263 -12.90952 -12.70321 -12.56821 -12.43037 -12.21594 -11.90671 -11.75911 -11.69226 -11.19208 -11.14737 -10.93822 -10.87615 -10.41480 -10.24944 -10.08526 -9.53101 -8.63874 -8.33824 -6.10700 1.28080 1.38084 1.41899 1.48462 1.59120 1.62660 2.23890 2.29504 2.37012 2.86218 3.00613 3.17296 3.33447 3.44880 3.53995 3.58516 3.75609 3.92752 3.98333 4.07757 4.12533 4.19861 4.30220 4.33696 4.33945 4.40163 4.51504 4.53878 4.66322 4.67429 4.76915 4.91406 4.94922 5.01965 5.07198 5.12553 5.20160 5.24301 5.43654 5.44408 5.56967 5.77848 5.82764 5.98105 6.21292 6.50192 7.08164 7.20082 7.25528 8.75457 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025126 B = 0.002410 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.121803 B =11616.740008 C =12152.215476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.698 5.698 14 C 0.118 3.882 15 H 0.070 0.930 16 C -0.150 4.150 17 C 0.048 3.952 18 H 0.111 0.889 19 C -0.106 4.106 20 C -0.112 4.112 21 C 0.042 3.958 22 H 0.110 0.890 23 N -0.468 5.468 24 C 0.021 3.979 25 H 0.075 0.925 26 C -0.128 4.128 27 C 0.110 3.890 28 N -0.715 5.715 29 C 0.528 3.472 30 O -0.574 6.574 31 H 0.271 0.729 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.415 0.585 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -24.082 4.976 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.352 5.352 14 C 0.011 3.989 15 H 0.088 0.912 16 C -0.189 4.189 17 C -0.060 4.060 18 H 0.129 0.871 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.067 4.067 22 H 0.128 0.872 23 N -0.193 5.193 24 C -0.091 4.091 25 H 0.093 0.907 26 C -0.166 4.166 27 C -0.013 4.013 28 N -0.369 5.369 29 C 0.313 3.687 30 O -0.453 6.453 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.253 0.747 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.232 -24.822 5.159 25.887 hybrid contribution 1.706 1.349 -1.066 2.422 sum 6.938 -23.473 4.093 24.817 Atomic orbital electron populations 1.70180 1.07916 1.28496 1.48168 1.26099 0.95949 1.03252 0.93850 0.84933 0.78645 0.76512 0.78029 1.18064 1.20085 1.19933 1.23235 0.95326 0.92098 1.58572 0.89992 1.85541 1.10395 0.99052 1.97024 1.23373 1.03600 0.94445 1.06730 1.20020 0.86280 0.86467 0.74898 1.90685 1.17203 1.85973 1.49856 1.45754 1.10071 1.04182 1.75234 1.22606 0.97249 0.81152 0.97914 0.91226 1.23444 0.99469 0.96921 0.99101 1.24486 0.90254 0.98352 0.92938 0.87105 1.22939 0.96767 0.96652 0.98017 1.22861 0.93065 0.99392 0.99705 1.24774 1.00133 0.86755 0.95041 0.87210 1.67796 1.01453 1.12065 1.37956 1.22660 0.95815 0.93069 0.97568 0.90720 1.22737 0.93493 0.98523 1.01887 1.22189 0.93967 0.89137 0.96028 1.46162 1.33703 1.10054 1.47016 1.20779 0.80327 0.89612 0.77944 1.90709 1.34189 1.79088 1.41303 0.92033 0.87094 0.87521 0.74653 0.91125 0.88084 0.90529 0.89177 0.90626 0.90757 0.88420 0.88930 0.87573 0.89700 0.74186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.97 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.06 29.55 68.60 2.03 45.08 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.50 9.50 67.96 0.65 -29.85 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -7.94 20.57 -56.49 -1.16 -9.11 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.54 18.42 7.84 87.66 0.69 19.11 16 12 O -0.56 -24.20 15.59 -3.03 -0.05 -24.25 16 13 N -0.70 -16.16 3.63 -434.92 -1.58 -17.74 16 14 C 0.12 2.57 2.26 46.60 0.11 2.67 16 15 H 0.07 1.88 6.82 -2.39 -0.02 1.86 16 16 C -0.15 -2.66 5.38 32.21 0.17 -2.49 16 17 C 0.05 0.84 4.37 46.15 0.20 1.04 16 18 H 0.11 2.24 7.20 -2.39 -0.02 2.22 16 19 C -0.11 -1.50 6.57 32.87 0.22 -1.28 16 20 C -0.11 -1.92 6.37 32.86 0.21 -1.72 16 21 C 0.04 0.85 4.34 46.14 0.20 1.05 16 22 H 0.11 2.52 7.18 -2.39 -0.02 2.51 16 23 N -0.47 -8.63 5.40 -779.77 -4.21 -12.84 16 24 C 0.02 0.40 2.11 44.91 0.09 0.49 16 25 H 0.08 1.60 4.97 -2.38 -0.01 1.59 16 26 C -0.13 -1.78 6.71 31.65 0.21 -1.57 16 27 C 0.11 1.07 7.78 86.83 0.68 1.74 16 28 N -0.71 -9.92 6.24 -459.80 -2.87 -12.79 16 29 C 0.53 11.11 7.58 87.90 0.67 11.78 16 30 O -0.57 -16.27 17.00 -3.04 -0.05 -16.32 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 34 H 0.42 6.94 8.02 -92.71 -0.74 6.20 16 35 H 0.07 1.42 7.31 -2.39 -0.02 1.40 16 36 H 0.10 1.42 7.33 -2.39 -0.02 1.40 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 0.98 7.81 -2.39 -0.02 0.96 16 39 H 0.08 1.33 6.49 -2.38 -0.02 1.32 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.41 6.77 -2.39 -0.02 1.40 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.42 4.38 8.96 -92.71 -0.83 3.55 16 Total: -1.00 -78.30 366.97 -3.15 -81.45 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.53 Total: 23.75 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.99 Total: -2.27 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -8.38 Total: -98.34 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.10 Total: -40.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -78.30 -3.15 -81.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108947529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.830 kcal (2) G-P(sol) polarization free energy of solvation -78.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds