Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48497 * 109.47048 * 270.00536 * 3 2 1 5 5 H 1.48507 * 109.46863 * 30.00073 * 3 2 1 6 6 H 1.48501 * 109.47300 * 150.00034 * 3 2 1 7 7 C 1.38789 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00195 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00006 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00230 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09009 * 110.66738 * 32.05519 * 14 13 11 16 16 C 1.58501 * 111.38284 * 268.69904 * 14 13 11 17 17 C 1.55846 * 102.82965 * 241.52034 * 16 14 13 18 18 H 1.08998 * 115.58294 * 159.39258 * 17 16 14 19 19 C 1.55854 * 105.02858 * 288.02062 * 17 16 14 20 20 C 1.54838 * 103.51671 * 72.48450 * 19 17 16 21 21 C 1.55841 * 103.52126 * 359.97438 * 20 19 17 22 22 H 1.09000 * 115.57990 * 158.88704 * 21 20 19 23 23 N 1.50651 * 101.73269 * 32.97387 * 17 16 14 24 24 C 1.46891 * 111.00071 * 189.57005 * 23 17 16 25 25 H 1.08998 * 110.43431 * 44.70992 * 24 23 17 26 26 C 1.54628 * 110.48533 * 167.24538 * 24 23 17 27 27 C 1.54693 * 101.67013 * 143.39796 * 26 24 23 28 28 N 1.46758 * 105.53112 * 334.73942 * 27 26 24 29 29 C 1.34416 * 111.30209 * 16.92775 * 28 27 26 30 30 O 1.21283 * 124.94122 * 179.55989 * 29 28 27 31 31 H 0.97006 * 120.00761 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47320 * 59.99773 * 10 9 7 33 33 H 1.09003 * 109.47247 * 299.99415 * 10 9 7 34 34 H 0.96995 * 120.00105 * 0.02562 * 13 11 10 35 35 H 1.09004 * 111.15817 * 123.13935 * 16 14 13 36 36 H 1.09008 * 110.86011 * 359.76129 * 16 14 13 37 37 H 1.08991 * 110.61477 * 313.97302 * 19 17 16 38 38 H 1.08998 * 110.60874 * 190.98879 * 19 17 16 39 39 H 1.08997 * 110.60617 * 241.48888 * 20 19 17 40 40 H 1.08999 * 110.74528 * 118.57558 * 20 19 17 41 41 H 1.09006 * 110.96889 * 261.59648 * 26 24 23 42 42 H 1.09003 * 110.97287 * 25.35827 * 26 24 23 43 43 H 1.08998 * 110.29489 * 215.68114 * 27 26 24 44 44 H 1.09002 * 110.21035 * 93.75628 * 27 26 24 45 45 H 0.96997 * 124.34937 * 196.89908 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0866 -2.9844 -0.0001 11 6 5.5730 -3.2323 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0457 -4.4945 0.0016 14 6 7.4908 -4.7355 0.0021 15 1 8.0123 -3.9460 0.5434 16 6 8.0558 -4.8641 -1.4732 17 6 8.6258 -6.3143 -1.5003 18 1 8.7509 -6.7525 -2.4905 19 6 9.9116 -6.2596 -0.6212 20 6 9.3597 -6.1341 0.8200 21 6 7.8143 -6.1291 0.6191 22 1 7.2251 -6.4047 1.4938 23 7 7.6766 -7.0339 -0.5779 24 6 8.1616 -8.3868 -0.2743 25 1 9.2273 -8.3667 -0.0461 26 6 7.3671 -8.9946 0.9047 27 6 7.2696 -10.4800 0.4837 28 7 7.3821 -10.4818 -0.9796 29 6 7.8856 -9.3205 -1.4321 30 8 8.0895 -9.0595 -2.5988 31 1 -0.4851 0.8400 0.0004 32 1 3.6440 -3.4313 -0.8903 33 1 3.6434 -3.4317 0.8896 34 1 5.4292 -5.2433 0.0008 35 1 8.8472 -4.1372 -1.6562 36 1 7.2566 -4.7522 -2.2060 37 1 10.5154 -5.3893 -0.8781 38 1 10.4912 -7.1761 -0.7317 39 1 9.6899 -5.2015 1.2774 40 1 9.6655 -6.9868 1.4262 41 1 7.9152 -8.8876 1.8409 42 1 6.3769 -8.5454 0.9807 43 1 6.3100 -10.8972 0.7887 44 1 8.0862 -11.0510 0.9255 45 1 7.1264 -11.2256 -1.5472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110305477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = -39.872011 kcal Electronic energy + Delta-G solvation = -27489.042441 eV Core-core repulsion = 23633.156546 eV Total energy + Delta-G solvation = -3855.885895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74275 -39.95189 -38.76007 -36.68408 -34.29920 -32.42664 -32.39635 -30.33052 -30.01739 -29.41313 -28.25180 -26.53292 -25.57627 -22.67053 -22.43594 -21.39597 -20.24388 -19.83683 -19.70064 -17.82150 -17.75732 -17.53379 -16.65913 -16.46167 -15.70637 -15.41970 -15.02260 -14.83670 -14.81264 -14.54363 -14.14626 -13.92276 -13.64421 -13.34655 -13.10047 -13.02377 -12.90660 -12.77047 -12.53319 -12.35071 -11.86336 -11.76939 -11.64538 -11.51595 -11.42506 -11.24039 -11.02705 -10.98260 -10.73019 -10.50358 -10.14431 -9.82777 -9.54860 -9.44267 -9.08119 -8.97872 -8.79460 -8.46495 -6.88240 -6.26333 -3.97580 2.20301 2.80790 2.88696 3.02083 3.32005 3.36101 3.50843 3.52742 3.73153 3.79639 3.99241 4.14534 4.34022 4.35713 4.41296 4.51842 4.59891 4.75270 4.79969 4.81421 4.91389 4.94623 5.00533 5.02018 5.12799 5.20023 5.27712 5.33550 5.40234 5.42705 5.53156 5.56674 5.66986 5.81705 5.86805 5.92723 6.05754 6.07756 6.20969 6.36283 6.55476 6.59718 6.69161 7.73155 7.89274 7.96834 8.44590 8.56971 9.20001 10.82973 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002423 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.805668 B =11554.767190 C =12192.114079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.722 5.722 14 C 0.155 3.845 15 H 0.099 0.901 16 C -0.125 4.125 17 C 0.050 3.950 18 H 0.125 0.875 19 C -0.156 4.156 20 C -0.151 4.151 21 C 0.040 3.960 22 H 0.121 0.879 23 N -0.474 5.474 24 C 0.028 3.972 25 H 0.091 0.909 26 C -0.129 4.129 27 C 0.103 3.897 28 N -0.733 5.733 29 C 0.533 3.467 30 O -0.522 6.522 31 H 0.270 0.730 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.403 0.597 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.976 -23.781 3.921 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.397 6.397 13 N -0.375 5.375 14 C 0.048 3.952 15 H 0.117 0.883 16 C -0.165 4.165 17 C -0.057 4.057 18 H 0.143 0.857 19 C -0.195 4.195 20 C -0.190 4.190 21 C -0.069 4.069 22 H 0.139 0.861 23 N -0.197 5.197 24 C -0.084 4.084 25 H 0.108 0.892 26 C -0.167 4.167 27 C -0.022 4.022 28 N -0.390 5.390 29 C 0.318 3.682 30 O -0.397 6.397 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.237 0.763 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 20.616 -21.968 3.153 30.291 hybrid contribution -0.385 -1.149 0.114 1.217 sum 20.231 -23.117 3.268 30.893 Atomic orbital electron populations 1.69939 1.05925 1.27732 1.48219 1.24714 0.94447 0.98967 0.93227 0.86731 0.81887 0.83276 0.79927 1.19229 1.20000 1.15906 1.22325 0.88343 0.97510 1.58596 0.89411 1.84764 1.09184 1.00253 1.97420 1.23275 0.94181 1.04183 1.05774 1.20288 0.90508 0.82410 0.75042 1.90691 1.58742 1.42252 1.47990 1.45851 1.06946 1.07913 1.76757 1.22577 0.81867 0.95019 0.95729 0.88306 1.23722 1.01003 0.94539 0.97187 1.24583 0.89272 0.94370 0.97521 0.85704 1.23324 0.98833 1.02402 0.94952 1.23227 0.95607 1.02983 0.97208 1.24756 0.95430 0.92766 0.93927 0.86088 1.67686 1.44789 0.98731 1.08510 1.22568 1.00161 0.91165 0.94555 0.89157 1.22790 1.02465 0.94025 0.97446 1.22078 1.02631 0.97425 0.80062 1.46116 1.66285 1.17899 1.08709 1.20562 0.75701 0.82686 0.89296 1.90736 1.52618 1.77466 1.18871 0.91973 0.88526 0.88550 0.76290 0.90372 0.90313 0.90327 0.91628 0.90214 0.91151 0.89154 0.88658 0.89924 0.91057 0.75032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.79 13.97 55.49 0.78 -26.02 16 2 C 0.09 2.80 5.50 -17.44 -0.10 2.70 16 3 Si 0.86 21.94 27.74 -169.99 -4.71 17.22 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 11 C 0.53 9.36 7.85 -10.99 -0.09 9.28 16 12 O -0.52 -11.10 15.51 5.55 0.09 -11.01 16 13 N -0.72 -9.22 5.18 -49.46 -0.26 -9.48 16 14 C 0.15 1.70 2.92 -63.40 -0.18 1.51 16 15 H 0.10 1.23 7.20 -51.92 -0.37 0.85 16 16 C -0.13 -1.39 6.41 -22.17 -0.14 -1.53 16 17 C 0.05 0.49 4.51 -62.56 -0.28 0.20 16 18 H 0.13 1.42 7.02 -51.93 -0.36 1.05 16 19 C -0.16 -1.17 5.63 -24.24 -0.14 -1.30 16 20 C -0.15 -0.99 5.63 -24.25 -0.14 -1.12 16 21 C 0.04 0.31 3.91 -62.57 -0.24 0.06 16 22 H 0.12 0.79 7.65 -51.93 -0.40 0.39 16 23 N -0.47 -4.14 5.39 -197.84 -1.07 -5.21 16 24 C 0.03 0.20 2.06 -67.73 -0.14 0.06 16 25 H 0.09 0.59 5.05 -51.93 -0.26 0.33 16 26 C -0.13 -0.55 5.75 -24.98 -0.14 -0.69 16 27 C 0.10 0.35 7.79 -3.01 -0.02 0.33 16 28 N -0.73 -4.59 6.24 -59.09 -0.37 -4.96 16 29 C 0.53 5.13 8.04 -10.86 -0.09 5.04 16 30 O -0.52 -7.21 16.54 5.55 0.09 -7.12 16 31 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 33 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.40 4.36 8.66 -40.82 -0.35 4.00 16 35 H 0.08 0.84 7.81 -51.93 -0.41 0.43 16 36 H 0.08 1.02 8.06 -51.92 -0.42 0.61 16 37 H 0.08 0.58 7.80 -51.93 -0.41 0.17 16 38 H 0.07 0.46 7.08 -51.93 -0.37 0.09 16 39 H 0.08 0.54 7.79 -51.93 -0.40 0.13 16 40 H 0.07 0.36 7.50 -51.93 -0.39 -0.03 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 43 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.41 2.09 8.96 -40.82 -0.37 1.73 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -36.43 367.91 -9.69 -46.12 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.62 Total: 2.94 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.17 Total: -2.41 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.92 Total: -45.66 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.43 -9.69 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.245 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds