Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48497 * 109.47048 * 270.00536 * 3 2 1 5 5 H 1.48507 * 109.46863 * 30.00073 * 3 2 1 6 6 H 1.48501 * 109.47300 * 150.00034 * 3 2 1 7 7 C 1.38789 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99795 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00195 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00006 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00035 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00230 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09009 * 110.66738 * 32.05519 * 14 13 11 16 16 C 1.58501 * 111.38284 * 268.69904 * 14 13 11 17 17 C 1.55846 * 102.82965 * 241.52034 * 16 14 13 18 18 H 1.08998 * 115.58294 * 159.39258 * 17 16 14 19 19 C 1.55854 * 105.02858 * 288.02062 * 17 16 14 20 20 C 1.54838 * 103.51671 * 72.48450 * 19 17 16 21 21 C 1.55841 * 103.52126 * 359.97438 * 20 19 17 22 22 H 1.09000 * 115.57990 * 158.88704 * 21 20 19 23 23 N 1.50651 * 101.73269 * 32.97387 * 17 16 14 24 24 C 1.46891 * 111.00071 * 189.57005 * 23 17 16 25 25 H 1.08998 * 110.43431 * 44.70992 * 24 23 17 26 26 C 1.54628 * 110.48533 * 167.24538 * 24 23 17 27 27 C 1.54693 * 101.67013 * 143.39796 * 26 24 23 28 28 N 1.46758 * 105.53112 * 334.73942 * 27 26 24 29 29 C 1.34416 * 111.30209 * 16.92775 * 28 27 26 30 30 O 1.21283 * 124.94122 * 179.55989 * 29 28 27 31 31 H 0.97006 * 120.00761 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47320 * 59.99773 * 10 9 7 33 33 H 1.09003 * 109.47247 * 299.99415 * 10 9 7 34 34 H 0.96995 * 120.00105 * 0.02562 * 13 11 10 35 35 H 1.09004 * 111.15817 * 123.13935 * 16 14 13 36 36 H 1.09008 * 110.86011 * 359.76129 * 16 14 13 37 37 H 1.08991 * 110.61477 * 313.97302 * 19 17 16 38 38 H 1.08998 * 110.60874 * 190.98879 * 19 17 16 39 39 H 1.08997 * 110.60617 * 241.48888 * 20 19 17 40 40 H 1.08999 * 110.74528 * 118.57558 * 20 19 17 41 41 H 1.09006 * 110.96889 * 261.59648 * 26 24 23 42 42 H 1.09003 * 110.97287 * 25.35827 * 26 24 23 43 43 H 1.08998 * 110.29489 * 215.68114 * 27 26 24 44 44 H 1.09002 * 110.21035 * 93.75628 * 27 26 24 45 45 H 0.96997 * 124.34937 * 196.89908 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0866 -2.9844 -0.0001 11 6 5.5730 -3.2323 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0457 -4.4945 0.0016 14 6 7.4908 -4.7355 0.0021 15 1 8.0123 -3.9460 0.5434 16 6 8.0558 -4.8641 -1.4732 17 6 8.6258 -6.3143 -1.5003 18 1 8.7509 -6.7525 -2.4905 19 6 9.9116 -6.2596 -0.6212 20 6 9.3597 -6.1341 0.8200 21 6 7.8143 -6.1291 0.6191 22 1 7.2251 -6.4047 1.4938 23 7 7.6766 -7.0339 -0.5779 24 6 8.1616 -8.3868 -0.2743 25 1 9.2273 -8.3667 -0.0461 26 6 7.3671 -8.9946 0.9047 27 6 7.2696 -10.4800 0.4837 28 7 7.3821 -10.4818 -0.9796 29 6 7.8856 -9.3205 -1.4321 30 8 8.0895 -9.0595 -2.5988 31 1 -0.4851 0.8400 0.0004 32 1 3.6440 -3.4313 -0.8903 33 1 3.6434 -3.4317 0.8896 34 1 5.4292 -5.2433 0.0008 35 1 8.8472 -4.1372 -1.6562 36 1 7.2566 -4.7522 -2.2060 37 1 10.5154 -5.3893 -0.8781 38 1 10.4912 -7.1761 -0.7317 39 1 9.6899 -5.2015 1.2774 40 1 9.6655 -6.9868 1.4262 41 1 7.9152 -8.8876 1.8409 42 1 6.3769 -8.5454 0.9807 43 1 6.3100 -10.8972 0.7887 44 1 8.0862 -11.0510 0.9255 45 1 7.1264 -11.2256 -1.5472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110305477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = -70.098800 kcal Electronic energy + Delta-G solvation = -27490.353173 eV Core-core repulsion = 23633.156546 eV Total energy + Delta-G solvation = -3857.196627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41688 -40.78379 -39.96266 -37.33736 -35.45779 -34.66410 -33.09158 -31.47580 -30.76378 -29.95309 -29.29766 -27.84510 -27.14879 -23.45224 -22.96457 -22.08147 -21.52030 -20.50133 -20.41907 -19.79513 -18.35605 -18.08940 -17.86669 -17.62124 -17.08717 -16.58511 -16.27908 -16.09465 -15.85103 -15.40498 -15.13652 -14.93049 -14.75802 -14.54970 -14.35619 -13.94943 -13.83139 -13.57166 -13.35590 -13.33367 -13.03850 -12.98455 -12.88872 -12.66586 -12.37597 -12.24023 -12.13024 -11.97317 -11.86848 -11.82422 -11.40304 -11.16544 -10.87838 -10.84951 -10.52276 -10.07544 -10.04251 -9.59549 -8.97973 -8.50827 -6.21237 1.00422 1.32263 1.47694 1.52733 1.57141 1.60281 2.24292 2.28657 2.39815 2.72941 2.87424 2.92292 3.27221 3.40731 3.58705 3.73959 3.81384 3.91117 4.02840 4.09872 4.13757 4.21191 4.25819 4.29067 4.40474 4.47337 4.49348 4.51260 4.65763 4.70367 4.82462 4.96223 5.01450 5.04860 5.07012 5.15236 5.22423 5.24854 5.46188 5.62937 5.71533 5.84066 5.99200 6.04249 6.12222 6.54128 6.94397 7.24852 7.28067 8.61717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002423 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.805668 B =11554.767190 C =12192.114079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.235 1.235 7 C -0.528 4.528 8 H 0.061 0.939 9 S -0.174 6.174 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.698 5.698 14 C 0.149 3.851 15 H 0.089 0.911 16 C -0.125 4.125 17 C 0.050 3.950 18 H 0.102 0.898 19 C -0.151 4.151 20 C -0.144 4.144 21 C 0.054 3.946 22 H 0.145 0.855 23 N -0.487 5.487 24 C 0.030 3.970 25 H 0.102 0.898 26 C -0.123 4.123 27 C 0.100 3.900 28 N -0.727 5.727 29 C 0.517 3.483 30 O -0.579 6.579 31 H 0.277 0.723 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.519 -25.504 6.164 33.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.676 4.676 8 H 0.079 0.921 9 S 0.053 5.947 10 C -0.262 4.262 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.350 5.350 14 C 0.043 3.957 15 H 0.107 0.893 16 C -0.165 4.165 17 C -0.058 4.058 18 H 0.120 0.880 19 C -0.190 4.190 20 C -0.183 4.183 21 C -0.054 4.054 22 H 0.163 0.837 23 N -0.210 5.210 24 C -0.082 4.082 25 H 0.119 0.881 26 C -0.161 4.161 27 C -0.024 4.024 28 N -0.381 5.381 29 C 0.303 3.697 30 O -0.458 6.458 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.252 0.748 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 22.144 -23.775 5.437 32.941 hybrid contribution -0.863 -0.832 -0.630 1.355 sum 21.280 -24.607 4.807 32.886 Atomic orbital electron populations 1.70017 1.07332 1.29022 1.49257 1.25576 0.95284 1.02304 0.92915 0.85858 0.80752 0.79545 0.80150 1.18891 1.18272 1.15876 1.22470 0.90361 0.96644 1.58126 0.92070 1.84669 1.06270 1.06201 1.97566 1.23269 0.96177 0.99535 1.07233 1.19926 0.89235 0.83488 0.75120 1.90682 1.59193 1.43754 1.50405 1.45652 1.08299 1.06518 1.74494 1.22773 0.80063 0.97061 0.95810 0.89330 1.23657 1.00219 0.95895 0.96681 1.24374 0.90952 0.93091 0.97392 0.88045 1.23275 0.97703 1.02768 0.95234 1.23226 0.94151 1.04324 0.96594 1.24769 0.96788 0.90000 0.93873 0.83700 1.67621 1.44993 0.99721 1.08705 1.22636 1.01312 0.89656 0.94638 0.88070 1.22883 1.02109 0.93840 0.97254 1.22358 1.04579 0.97468 0.77946 1.46246 1.64536 1.17003 1.10359 1.21140 0.75411 0.83937 0.89193 1.90705 1.55182 1.78726 1.21177 0.91374 0.87517 0.86664 0.74795 0.90568 0.92880 0.90481 0.90848 0.90076 0.88374 0.86166 0.89081 0.88209 0.88750 0.74660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.41 13.97 21.65 0.30 -56.11 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.92 45.38 27.74 68.60 1.90 47.28 16 4 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.23 -11.57 6.74 99.48 0.67 -10.90 16 7 C -0.53 -31.06 10.04 67.95 0.68 -30.38 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 9 S -0.17 -8.84 18.55 -56.49 -1.05 -9.89 16 10 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 11 C 0.54 18.46 7.85 87.66 0.69 19.15 16 12 O -0.56 -23.78 15.51 -3.06 -0.05 -23.83 16 13 N -0.70 -16.81 5.18 -428.78 -2.22 -19.03 16 14 C 0.15 3.07 2.92 47.93 0.14 3.21 16 15 H 0.09 2.09 7.20 -2.38 -0.02 2.08 16 16 C -0.13 -2.81 6.41 33.55 0.22 -2.59 16 17 C 0.05 0.96 4.51 46.15 0.21 1.16 16 18 H 0.10 2.45 7.02 -2.39 -0.02 2.43 16 19 C -0.15 -1.99 5.63 32.21 0.18 -1.81 16 20 C -0.14 -1.39 5.63 32.20 0.18 -1.21 16 21 C 0.05 0.67 3.91 46.12 0.18 0.85 16 22 H 0.15 1.20 7.65 -2.39 -0.02 1.18 16 23 N -0.49 -7.64 5.39 -779.83 -4.20 -11.85 16 24 C 0.03 0.35 2.06 44.91 0.09 0.44 16 25 H 0.10 0.98 5.05 -2.39 -0.01 0.96 16 26 C -0.12 -0.52 5.75 31.73 0.18 -0.34 16 27 C 0.10 0.30 7.79 86.91 0.68 0.98 16 28 N -0.73 -7.72 6.24 -459.46 -2.87 -10.59 16 29 C 0.52 9.49 8.04 87.90 0.71 10.20 16 30 O -0.58 -16.50 16.54 -3.04 -0.05 -16.55 16 31 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 32 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 33 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.42 8.08 8.66 -92.71 -0.80 7.28 16 35 H 0.08 1.69 7.81 -2.38 -0.02 1.67 16 36 H 0.05 1.44 8.06 -2.38 -0.02 1.42 16 37 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16 38 H 0.07 0.88 7.08 -2.39 -0.02 0.86 16 39 H 0.08 0.83 7.79 -2.39 -0.02 0.81 16 40 H 0.10 0.48 7.50 -2.39 -0.02 0.46 16 41 H 0.12 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.09 0.52 8.03 -2.39 -0.02 0.50 16 43 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.41 3.70 8.96 -92.71 -0.83 2.87 16 Total: -1.00 -82.27 367.91 -3.83 -86.10 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.63 Total: 15.50 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 5.04 Total: -1.04 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -8.99 Total: -97.57 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.10 Total: -40.38 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -82.27 -3.83 -86.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.996 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds