Wall clock time and date at job start Tue Mar 31 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46757 * 299.99435 * 3 2 1 6 6 H 1.48491 * 109.47112 * 59.99567 * 3 2 1 7 7 C 1.37880 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47335 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47097 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99744 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99974 * 359.97438 * 13 12 11 15 15 C 1.49453 * 120.00244 * 179.97438 * 13 12 11 16 16 O 1.21348 * 119.99504 * 0.02562 * 15 13 12 17 17 N 1.34767 * 120.00334 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00205 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47128 * 179.97438 * 18 17 15 20 20 O 1.42903 * 109.47107 * 64.99925 * 19 18 17 21 21 C 1.35729 * 116.99690 * 179.97438 * 20 19 18 22 22 N 1.32220 * 119.70104 * 359.97438 * 21 20 19 23 23 C 1.31964 * 121.67307 * 179.97438 * 22 21 20 24 24 C 1.38052 * 120.87826 * 0.03039 * 23 22 21 25 25 C 1.38797 * 119.31273 * 359.96873 * 24 23 22 26 26 C 1.38577 * 118.46067 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.46387 * 180.02562 * 26 25 24 28 28 H 0.96996 * 120.00245 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47640 * 59.99619 * 9 7 2 30 30 H 1.08999 * 109.47096 * 299.99077 * 9 7 2 31 31 H 1.08998 * 109.47588 * 59.99271 * 10 9 7 32 32 H 1.09007 * 109.47045 * 299.99577 * 10 9 7 33 33 H 1.08993 * 109.46796 * 59.99762 * 11 10 9 34 34 H 1.09004 * 109.46323 * 299.99818 * 11 10 9 35 35 H 0.96998 * 120.00011 * 359.97438 * 12 11 10 36 36 H 0.97005 * 119.99807 * 359.97438 * 17 15 13 37 37 H 1.09006 * 109.47069 * 59.99926 * 18 17 15 38 38 H 1.08993 * 109.47037 * 300.00074 * 18 17 15 39 39 H 1.08995 * 109.47153 * 304.99583 * 19 18 17 40 40 H 1.09002 * 109.47071 * 184.99974 * 19 18 17 41 41 H 1.08001 * 119.55754 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.34508 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.77298 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9831 -7.3713 0.0005 14 8 0.7899 -7.5930 0.0013 15 6 2.9542 -8.5073 -0.0008 16 8 4.1472 -8.2855 -0.0012 17 7 2.5050 -9.7779 -0.0003 18 6 3.4570 -10.8914 -0.0010 19 6 2.6919 -12.2165 0.0003 20 8 1.9593 -12.3447 -1.2199 21 6 1.2217 -13.4728 -1.3801 22 7 1.2089 -14.3881 -0.4260 23 6 0.5053 -15.4986 -0.5406 24 6 -0.2482 -15.7465 -1.6705 25 6 -0.2627 -14.8116 -2.6962 26 6 0.4862 -13.6552 -2.5464 27 9 0.5009 -12.7179 -3.5192 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8904 31 1 2.8720 -3.6043 0.8904 32 1 2.8719 -3.6044 -0.8895 33 1 0.8534 -5.0451 -0.8885 34 1 0.8540 -5.0446 0.8915 35 1 3.3860 -5.9233 -0.0005 36 1 1.5513 -9.9552 0.0011 37 1 4.0843 -10.8336 0.8886 38 1 4.0830 -10.8338 -0.8913 39 1 2.0008 -12.2361 0.8429 40 1 3.3970 -13.0430 0.0894 41 1 0.5193 -16.2232 0.2602 42 1 -0.8211 -16.6582 -1.7551 43 1 -0.8442 -14.9812 -3.5903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117306064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:21 Heat of formation + Delta-G solvation = -125.684910 kcal Electronic energy + Delta-G solvation = -27279.898968 eV Core-core repulsion = 22854.078770 eV Total energy + Delta-G solvation = -4425.820197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31178 -41.13102 -40.58049 -38.89788 -38.33369 -35.87113 -35.10911 -33.31414 -32.92356 -31.35730 -31.23354 -29.83971 -27.23175 -25.39571 -24.33624 -23.87172 -22.96781 -22.11155 -20.77295 -20.20951 -19.24478 -18.54851 -18.06236 -17.69515 -17.29741 -16.75351 -16.34213 -16.21656 -15.92267 -15.82347 -15.33925 -15.15718 -14.92689 -14.62883 -14.43413 -14.20959 -13.93311 -13.74174 -13.58822 -13.45133 -13.09603 -12.90688 -12.31164 -12.25046 -11.87779 -11.78858 -11.76294 -11.59876 -10.92285 -10.75053 -10.57270 -10.46331 -10.43772 -9.89421 -9.78919 -9.54695 -9.37150 -9.11034 -9.00993 -8.96310 -8.37460 -6.01998 -4.04898 0.33309 0.47874 1.42347 2.20727 2.33056 2.98712 3.23560 3.30900 3.38444 3.42412 3.45704 3.65128 3.70128 4.04684 4.21111 4.26625 4.44468 4.50806 4.54208 4.57953 4.83846 4.93272 5.09125 5.22075 5.28807 5.33896 5.34092 5.60937 5.70790 5.74463 5.90432 6.09636 6.28724 6.54339 6.55499 6.69880 6.88955 6.96411 7.06492 7.39847 7.62974 7.71052 7.74450 7.96556 8.06491 8.37850 9.01878 9.59509 11.09310 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.001527 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.067603 B =18327.953457 C =18974.558546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.525 6.525 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.703 5.703 18 C 0.119 3.881 19 C 0.058 3.942 20 O -0.295 6.295 21 C 0.300 3.700 22 N -0.515 5.515 23 C 0.130 3.870 24 C -0.183 4.183 25 C -0.075 4.075 26 C 0.034 3.966 27 F -0.120 7.120 28 H 0.260 0.740 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.416 0.584 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.149 0.851 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -37.120 -1.651 37.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.291 3.709 16 O -0.396 6.396 17 N -0.357 5.357 18 C -0.004 4.004 19 C -0.017 4.017 20 O -0.202 6.202 21 C 0.119 3.881 22 N -0.239 5.239 23 C -0.026 4.026 24 C -0.203 4.203 25 C -0.101 4.101 26 C 0.012 3.988 27 F -0.099 7.099 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.252 0.748 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.186 0.814 42 H 0.167 0.833 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.538 -36.550 -1.103 36.655 hybrid contribution -0.061 0.820 -0.747 1.111 sum 2.477 -35.730 -1.849 35.864 Atomic orbital electron populations 1.69973 1.06058 1.26591 1.50669 1.25029 0.94860 0.99329 0.95246 0.86516 0.80092 0.83697 0.77579 1.19719 1.21004 1.21014 1.21246 0.93105 0.90878 1.50816 0.92499 1.19043 0.93819 0.90808 0.97737 1.21930 0.99875 0.92942 1.01325 1.21849 0.91744 0.84709 1.02553 1.46061 1.12227 1.04959 1.71034 1.19966 0.88432 0.84496 0.79109 1.90768 1.15991 1.84683 1.48768 1.20340 0.88796 0.84329 0.77412 1.90764 1.16201 1.84782 1.47827 1.45697 1.11672 1.04714 1.73665 1.21587 0.91666 0.82713 1.04448 1.23023 0.95742 0.97722 0.85237 1.86365 1.58349 1.34768 1.40743 1.19869 0.91102 0.87374 0.89757 1.67461 1.23759 1.03804 1.28882 1.22553 0.90565 0.92420 0.97031 1.21958 1.02717 1.01259 0.94337 1.21593 0.96649 0.91159 1.00743 1.17693 1.03469 0.90540 0.87133 1.91573 1.95204 1.63055 1.60040 0.92987 0.96173 0.96176 0.92423 0.92406 0.91077 0.91076 0.75301 0.74763 0.88275 0.89624 0.90108 0.89151 0.81401 0.83349 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.69 -10.61 5.55 -60.73 -0.34 -10.95 16 13 C 0.50 7.70 7.89 -11.58 -0.09 7.61 16 14 O -0.53 -9.22 16.48 5.49 0.09 -9.13 16 15 C 0.51 6.84 7.89 -11.59 -0.09 6.75 16 16 O -0.52 -7.78 16.48 5.50 0.09 -7.69 16 17 N -0.70 -7.39 5.50 -60.73 -0.33 -7.73 16 18 C 0.12 0.93 6.06 -4.04 -0.02 0.90 16 19 C 0.06 0.39 5.44 37.16 0.20 0.59 16 20 O -0.30 -2.77 9.94 -18.89 -0.19 -2.96 16 21 C 0.30 2.66 7.50 -17.07 -0.13 2.54 16 22 N -0.52 -3.83 9.22 -13.28 -0.12 -3.95 16 23 C 0.13 0.60 11.17 -17.56 -0.20 0.40 16 24 C -0.18 -0.65 10.10 -39.44 -0.40 -1.05 16 25 C -0.08 -0.39 10.16 -39.25 -0.40 -0.79 16 26 C 0.03 0.29 7.35 -39.14 -0.29 0.00 16 27 F -0.12 -1.26 17.13 2.25 0.04 -1.22 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.41 5.74 7.94 -40.82 -0.32 5.42 16 36 H 0.42 4.27 7.94 -40.82 -0.32 3.95 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 40 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 41 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16 42 H 0.15 0.09 8.06 -52.48 -0.42 -0.34 16 43 H 0.16 0.45 8.06 -52.49 -0.42 0.02 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -34.73 385.93 -7.04 -41.77 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.68 Total: 2.15 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.13 Total: 3.38 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.06 Total: -48.69 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.01 Total: -19.79 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.73 -7.04 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.919 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds