Wall clock time and date at job start Tue Mar 31 2020 22:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48503 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46757 * 299.99435 * 3 2 1 6 6 H 1.48491 * 109.47112 * 59.99567 * 3 2 1 7 7 C 1.37880 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47335 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47097 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99744 * 180.02562 * 12 11 10 14 14 O 1.21355 * 119.99974 * 359.97438 * 13 12 11 15 15 C 1.49453 * 120.00244 * 179.97438 * 13 12 11 16 16 O 1.21348 * 119.99504 * 0.02562 * 15 13 12 17 17 N 1.34767 * 120.00334 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00205 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47128 * 179.97438 * 18 17 15 20 20 O 1.42903 * 109.47107 * 64.99925 * 19 18 17 21 21 C 1.35729 * 116.99690 * 179.97438 * 20 19 18 22 22 N 1.32220 * 119.70104 * 359.97438 * 21 20 19 23 23 C 1.31964 * 121.67307 * 179.97438 * 22 21 20 24 24 C 1.38052 * 120.87826 * 0.03039 * 23 22 21 25 25 C 1.38797 * 119.31273 * 359.96873 * 24 23 22 26 26 C 1.38577 * 118.46067 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.46387 * 180.02562 * 26 25 24 28 28 H 0.96996 * 120.00245 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47640 * 59.99619 * 9 7 2 30 30 H 1.08999 * 109.47096 * 299.99077 * 9 7 2 31 31 H 1.08998 * 109.47588 * 59.99271 * 10 9 7 32 32 H 1.09007 * 109.47045 * 299.99577 * 10 9 7 33 33 H 1.08993 * 109.46796 * 59.99762 * 11 10 9 34 34 H 1.09004 * 109.46323 * 299.99818 * 11 10 9 35 35 H 0.96998 * 120.00011 * 359.97438 * 12 11 10 36 36 H 0.97005 * 119.99807 * 359.97438 * 17 15 13 37 37 H 1.09006 * 109.47069 * 59.99926 * 18 17 15 38 38 H 1.08993 * 109.47037 * 300.00074 * 18 17 15 39 39 H 1.08995 * 109.47153 * 304.99583 * 19 18 17 40 40 H 1.09002 * 109.47071 * 184.99974 * 19 18 17 41 41 H 1.08001 * 119.55754 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.34508 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.77298 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9831 -7.3713 0.0005 14 8 0.7899 -7.5930 0.0013 15 6 2.9542 -8.5073 -0.0008 16 8 4.1472 -8.2855 -0.0012 17 7 2.5050 -9.7779 -0.0003 18 6 3.4570 -10.8914 -0.0010 19 6 2.6919 -12.2165 0.0003 20 8 1.9593 -12.3447 -1.2199 21 6 1.2217 -13.4728 -1.3801 22 7 1.2089 -14.3881 -0.4260 23 6 0.5053 -15.4986 -0.5406 24 6 -0.2482 -15.7465 -1.6705 25 6 -0.2627 -14.8116 -2.6962 26 6 0.4862 -13.6552 -2.5464 27 9 0.5009 -12.7179 -3.5192 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5568 0.8904 31 1 2.8720 -3.6043 0.8904 32 1 2.8719 -3.6044 -0.8895 33 1 0.8534 -5.0451 -0.8885 34 1 0.8540 -5.0446 0.8915 35 1 3.3860 -5.9233 -0.0005 36 1 1.5513 -9.9552 0.0011 37 1 4.0843 -10.8336 0.8886 38 1 4.0830 -10.8338 -0.8913 39 1 2.0008 -12.2361 0.8429 40 1 3.3970 -13.0430 0.0894 41 1 0.5193 -16.2232 0.2602 42 1 -0.8211 -16.6582 -1.7551 43 1 -0.8442 -14.9812 -3.5903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117306064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:20 Heat of formation + Delta-G solvation = -152.963614 kcal Electronic energy + Delta-G solvation = -27281.081861 eV Core-core repulsion = 22854.078770 eV Total energy + Delta-G solvation = -4427.003091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95441 -41.82758 -41.50765 -39.82810 -39.13479 -37.24565 -36.19237 -35.17990 -33.34838 -33.05750 -31.94419 -30.45422 -28.95829 -26.50140 -25.29618 -24.35477 -24.21322 -23.00747 -22.38270 -21.44363 -19.75933 -19.67223 -18.71127 -18.50301 -18.19728 -18.13702 -17.55513 -17.27111 -16.80802 -16.51429 -16.49956 -16.25348 -16.12603 -15.99527 -15.37877 -15.13792 -14.92202 -14.60918 -14.29707 -14.22717 -14.06983 -13.79341 -13.77895 -13.51941 -13.40877 -12.95451 -12.79425 -12.78699 -12.56115 -12.37724 -12.19314 -11.71338 -11.57190 -11.22656 -10.90532 -10.88144 -10.75709 -10.55827 -10.44456 -10.31009 -9.49653 -8.19875 -6.30844 -0.10758 0.06663 0.26137 1.23057 1.41658 1.42105 1.55276 1.72720 2.06358 2.41275 2.56369 2.58262 2.98359 3.14123 3.28096 3.36392 3.57674 3.73490 3.96342 4.01286 4.07018 4.16837 4.17425 4.33781 4.51323 4.53246 4.58388 4.67222 4.84903 4.90410 4.91299 5.00829 5.02366 5.14092 5.21156 5.38145 5.51239 5.69954 5.80938 5.83962 6.04028 6.21537 6.26374 6.63004 6.63441 6.85908 6.86484 7.38629 8.92244 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024341 B = 0.001527 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.067603 B =18327.953457 C =18974.558546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.126 3.874 12 N -0.685 5.685 13 C 0.500 3.500 14 O -0.550 6.550 15 C 0.517 3.483 16 O -0.537 6.537 17 N -0.690 5.690 18 C 0.119 3.881 19 C 0.064 3.936 20 O -0.319 6.319 21 C 0.277 3.723 22 N -0.529 5.529 23 C 0.127 3.873 24 C -0.168 4.168 25 C -0.072 4.072 26 C -0.003 4.003 27 F -0.142 7.142 28 H 0.263 0.737 29 H -0.004 1.004 30 H -0.003 1.003 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.420 0.580 36 H 0.417 0.583 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -39.197 -1.161 39.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.003 3.997 12 N -0.337 5.337 13 C 0.281 3.719 14 O -0.428 6.428 15 C 0.297 3.703 16 O -0.414 6.414 17 N -0.344 5.344 18 C -0.003 4.003 19 C -0.011 4.011 20 O -0.227 6.227 21 C 0.097 3.903 22 N -0.253 5.253 23 C -0.028 4.028 24 C -0.187 4.187 25 C -0.098 4.098 26 C -0.025 4.025 27 F -0.121 7.121 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.257 0.743 36 H 0.254 0.746 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.219 0.781 42 H 0.205 0.795 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.490 -38.668 -0.612 38.830 hybrid contribution -0.434 1.285 -0.879 1.616 sum 3.056 -37.383 -1.491 37.537 Atomic orbital electron populations 1.70106 1.07822 1.27717 1.51696 1.25987 0.95754 1.03424 0.94770 0.85378 0.79140 0.78741 0.77650 1.18429 1.20555 1.20503 1.21712 0.93738 0.92108 1.50451 0.91732 1.18947 0.94372 0.92630 0.95445 1.21644 0.98631 0.91806 1.02280 1.21489 0.91620 0.84570 1.01972 1.45870 1.12297 1.04586 1.70984 1.20349 0.88505 0.84887 0.78175 1.90757 1.17171 1.85070 1.49787 1.19875 0.87967 0.84561 0.77924 1.90761 1.16392 1.84970 1.49264 1.45760 1.12344 1.04426 1.71825 1.21806 0.91325 0.82120 1.05098 1.23043 0.95910 0.97385 0.84740 1.86315 1.58982 1.35649 1.41775 1.20018 0.91932 0.87797 0.90511 1.67498 1.24693 1.04508 1.28609 1.23271 0.89416 0.91890 0.98256 1.22406 1.01654 1.01744 0.92939 1.21974 0.95687 0.90101 1.02019 1.18151 1.05544 0.91652 0.87200 1.91503 1.95582 1.64134 1.60889 0.92800 0.98577 0.98461 0.91321 0.91467 0.91883 0.91637 0.74251 0.74583 0.86446 0.90023 0.89690 0.87562 0.78098 0.79544 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.11 -4.14 5.27 30.60 0.16 -3.98 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 N -0.69 -20.74 5.55 -464.41 -2.58 -23.31 16 13 C 0.50 15.32 7.89 87.27 0.69 16.01 16 14 O -0.55 -19.45 16.48 -3.26 -0.05 -19.51 16 15 C 0.52 13.58 7.89 87.27 0.69 14.27 16 16 O -0.54 -15.59 16.48 -3.24 -0.05 -15.64 16 17 N -0.69 -14.22 5.50 -464.42 -2.55 -16.77 16 18 C 0.12 1.74 6.06 86.38 0.52 2.27 16 19 C 0.06 0.82 5.44 71.98 0.39 1.22 16 20 O -0.32 -6.14 9.94 -90.51 -0.90 -7.04 16 21 C 0.28 4.95 7.50 84.84 0.64 5.59 16 22 N -0.53 -7.23 9.22 -308.77 -2.85 -10.08 16 23 C 0.13 0.83 11.17 84.63 0.95 1.78 16 24 C -0.17 -0.69 10.10 22.36 0.23 -0.47 16 25 C -0.07 -0.65 10.16 22.48 0.23 -0.42 16 26 C 0.00 -0.06 7.35 22.56 0.17 0.11 16 27 F -0.14 -3.18 17.13 44.97 0.77 -2.41 16 28 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.42 11.32 7.94 -92.71 -0.74 10.58 16 36 H 0.42 8.55 7.94 -92.70 -0.74 7.82 16 37 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.01 8.11 -2.39 -0.02 0.99 16 40 H 0.11 1.02 8.10 -2.39 -0.02 1.00 16 41 H 0.20 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.19 -0.67 8.06 -2.91 -0.02 -0.70 16 43 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -76.51 385.93 -0.32 -76.83 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.41 Total: 15.53 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.99 Total: 12.79 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -7.69 Total: -106.81 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.01 Total: -42.19 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.77 Total: -2.41 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.51 -0.32 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.132 kcal (2) G-P(sol) polarization free energy of solvation -76.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds