Wall clock time and date at job start Tue Mar 31 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00522 * 2 1 4 4 H 1.48499 * 109.47536 * 240.00387 * 3 2 1 5 5 H 1.48504 * 109.47015 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47468 * 120.00122 * 3 2 1 7 7 C 1.38947 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.37106 * 120.00276 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00003 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00342 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99792 * 179.97438 * 10 9 7 13 13 N 1.46891 * 109.47313 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00340 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47302 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.46833 * 180.02562 * 15 14 13 17 17 C 1.34779 * 119.99807 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00046 * 179.97438 * 17 16 15 20 20 C 1.53003 * 109.47069 * 180.02562 * 19 17 16 21 21 C 1.53005 * 109.46776 * 180.02562 * 20 19 17 22 22 C 1.50700 * 109.46909 * 180.02562 * 21 20 19 23 23 C 1.38423 * 122.53613 * 270.00211 * 22 21 20 24 24 C 1.33390 * 114.91977 * 180.02562 * 23 22 21 25 25 S 1.75887 * 109.59565 * 359.75483 * 24 23 22 26 26 C 1.33391 * 122.54338 * 90.02238 * 22 21 20 27 27 H 0.97004 * 119.99750 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99311 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.46705 * 59.99330 * 12 10 9 30 30 H 1.09002 * 109.46799 * 300.00184 * 12 10 9 31 31 H 1.00903 * 110.99864 * 303.94974 * 13 12 10 32 32 H 1.09005 * 109.47221 * 59.99566 * 14 13 12 33 33 H 1.09007 * 109.47021 * 299.99959 * 14 13 12 34 34 H 1.08994 * 109.47222 * 59.99901 * 15 14 13 35 35 H 1.09003 * 109.46944 * 299.99337 * 15 14 13 36 36 H 0.96999 * 120.00283 * 359.97438 * 16 15 14 37 37 H 1.09005 * 109.47250 * 59.99836 * 19 17 16 38 38 H 1.09007 * 109.47222 * 300.00088 * 19 17 16 39 39 H 1.08994 * 109.46921 * 60.00192 * 20 19 17 40 40 H 1.08994 * 109.47207 * 299.99884 * 20 19 17 41 41 H 1.08994 * 109.47301 * 60.00348 * 21 20 19 42 42 H 1.09003 * 109.46866 * 299.99784 * 21 20 19 43 43 H 1.08001 * 122.53963 * 0.04211 * 23 22 21 44 44 H 1.07998 * 125.20164 * 180.02562 * 24 23 22 45 45 H 1.08002 * 125.19887 * 359.95301 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2436 -4.8630 -0.0022 13 7 2.1980 -5.9795 -0.0014 14 6 1.4977 -7.2709 -0.0026 15 6 2.5226 -8.4069 -0.0011 16 7 1.8240 -9.6947 -0.0029 17 6 2.5288 -10.8436 -0.0026 18 8 3.7412 -10.8112 -0.0013 19 6 1.8103 -12.1682 -0.0038 20 6 2.8352 -13.3043 -0.0025 21 6 2.1057 -14.6492 -0.0044 22 6 3.1151 -15.7682 -0.0024 23 6 3.6163 -16.3206 -1.1684 24 6 4.5012 -17.3028 -0.9899 25 16 4.7467 -17.5699 0.7311 26 6 3.5929 -16.3015 1.1230 27 1 -0.4850 0.8401 0.0004 28 1 0.3532 -2.3906 -0.0016 29 1 0.6172 -4.9204 -0.8924 30 1 0.6165 -4.9208 0.8876 31 1 2.8335 -5.9126 -0.7824 32 1 0.8737 -7.3450 -0.8933 33 1 0.8718 -7.3456 0.8867 34 1 3.1461 -8.3326 0.8897 35 1 3.1487 -8.3325 -0.8903 36 1 0.8544 -9.7205 -0.0043 37 1 1.1863 -12.2423 -0.8945 38 1 1.1844 -12.2429 0.8855 39 1 3.4587 -13.2300 0.8884 40 1 3.4613 -13.2297 -0.8915 41 1 1.4824 -14.7232 -0.8955 42 1 1.4792 -14.7239 0.8845 43 1 3.3141 -15.9820 -2.1485 44 1 4.9948 -17.8474 -1.7812 45 1 3.3170 -15.9978 2.1220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129967641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:47 Heat of formation + Delta-G solvation = -55.100414 kcal Electronic energy + Delta-G solvation = -24457.462979 eV Core-core repulsion = 20600.916731 eV Total energy + Delta-G solvation = -3856.546248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98159 -38.80340 -38.32747 -36.36802 -34.52818 -34.33867 -33.74621 -31.25678 -30.69552 -29.44430 -27.76395 -25.95939 -24.24125 -23.60284 -22.29992 -21.89875 -20.45929 -19.29117 -19.12105 -18.06847 -17.91541 -17.19860 -16.37902 -16.18500 -16.08324 -15.76412 -15.49501 -14.77904 -14.49954 -14.29565 -14.01781 -13.90438 -13.80910 -13.43766 -13.39658 -13.17622 -13.04586 -12.83384 -12.44368 -12.11783 -12.07166 -11.90063 -11.79183 -11.52961 -11.46516 -11.41709 -11.12855 -11.01868 -11.01649 -10.44638 -10.22510 -10.05316 -9.51184 -9.24952 -9.19130 -8.75482 -8.51627 -8.14285 -7.97665 -6.42922 -3.83804 0.62366 1.28670 1.60967 2.29378 2.46077 2.90778 3.19930 3.25621 3.30379 3.88825 4.11129 4.33589 4.36740 4.46220 4.51040 4.66526 4.78397 4.84789 4.95591 4.98667 5.02846 5.16592 5.18253 5.22606 5.24625 5.27900 5.35380 5.37431 5.59660 5.71025 5.72836 5.82786 5.89875 5.93575 5.95452 6.04703 6.11713 6.19364 6.25888 7.08541 7.28060 7.54150 7.55514 8.03605 8.04735 8.59731 9.16592 9.52470 10.03936 10.74729 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.049848 B = 0.001138 C = 0.001125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.571292 B =24600.456158 C =24881.602341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.582 6.582 12 C 0.053 3.947 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.119 3.881 16 N -0.731 5.731 17 C 0.509 3.491 18 O -0.538 6.538 19 C -0.140 4.140 20 C -0.098 4.098 21 C -0.061 4.061 22 C -0.098 4.098 23 C -0.130 4.130 24 C -0.212 4.212 25 S 0.087 5.913 26 C -0.211 4.211 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.352 0.648 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.305 -34.671 -1.071 34.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.005 4.005 16 N -0.384 5.384 17 C 0.296 3.704 18 O -0.414 6.414 19 C -0.180 4.180 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.110 4.110 23 C -0.161 4.161 24 C -0.347 4.347 25 S 0.351 5.649 26 C -0.347 4.347 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.158 0.842 44 H 0.181 0.819 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.279 -35.458 0.467 35.462 hybrid contribution -1.958 1.830 -1.730 3.191 sum -1.679 -33.627 -1.264 33.693 Atomic orbital electron populations 1.69604 1.05948 1.28283 1.50518 1.25254 0.95629 0.99718 0.97230 0.85912 0.78767 0.80399 0.79118 1.19902 1.20966 1.19847 1.19673 0.93390 0.82238 1.47741 0.87936 1.41845 1.09180 1.04568 1.64322 1.19777 0.88402 0.84701 0.84662 1.90534 1.13729 1.87016 1.55338 1.21667 0.94219 0.90817 1.01308 1.59943 1.18811 0.99471 1.51658 1.22081 0.95565 0.89449 1.00947 1.21280 0.94962 0.80853 1.03388 1.45970 1.10330 1.06043 1.76016 1.20713 0.88082 0.85711 0.75923 1.90741 1.14071 1.87706 1.48873 1.21696 0.99685 0.92155 1.04495 1.21316 0.97171 0.91005 1.04173 1.20366 0.95449 0.91273 1.03013 1.18927 1.00750 0.99393 0.91968 1.20134 0.98900 0.97506 0.99529 1.25614 1.05455 1.04632 0.99011 1.84332 1.42949 1.36685 1.00972 1.25495 1.03968 1.02671 1.02527 0.91813 0.77456 0.93725 0.89475 0.82807 0.94961 0.90499 0.90237 0.91424 0.76662 0.88797 0.88771 0.90941 0.90919 0.90713 0.90834 0.84200 0.81911 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.32 7.82 -10.99 -0.09 10.24 16 11 O -0.58 -15.88 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.46 6.13 -115.06 -0.70 -11.17 16 14 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 15 C 0.12 1.34 5.94 -4.04 -0.02 1.31 16 16 N -0.73 -6.30 5.56 -60.29 -0.33 -6.64 16 17 C 0.51 5.12 7.83 -10.99 -0.09 5.04 16 18 O -0.54 -7.97 15.98 5.55 0.09 -7.88 16 19 C -0.14 -0.81 5.70 -27.88 -0.16 -0.97 16 20 C -0.10 -0.69 4.49 -26.73 -0.12 -0.81 16 21 C -0.06 -0.32 5.47 -27.88 -0.15 -0.47 16 22 C -0.10 -0.68 5.06 -106.25 -0.54 -1.21 16 23 C -0.13 -0.88 9.98 -41.21 -0.41 -1.29 16 24 C -0.21 -1.37 11.23 29.04 0.33 -1.05 16 25 S 0.09 0.58 23.34 -107.50 -2.51 -1.93 16 26 C -0.21 -1.46 10.98 29.04 0.32 -1.14 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.35 5.77 8.43 -39.29 -0.33 5.43 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 2.16 8.47 -40.82 -0.35 1.81 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.37 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 40 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 42 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 43 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -34.60 399.64 -9.78 -44.38 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.85 Total: 11.86 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.22 Total: 3.03 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.37 Total: -55.68 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -2.51 Total: -1.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.60 -9.78 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129967641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.719 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds