Wall clock time and date at job start Tue Mar 31 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48501 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46927 * 299.99806 * 3 2 1 6 6 H 1.48490 * 109.47148 * 59.99593 * 3 2 1 7 7 C 1.37878 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47527 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99686 * 359.97438 * 10 9 7 12 12 N 1.34765 * 120.00493 * 179.97438 * 10 9 7 13 13 C 1.39955 * 120.00329 * 185.27455 * 12 10 9 14 14 C 1.38991 * 119.99832 * 213.33141 * 13 12 10 15 15 C 1.38211 * 120.22351 * 180.02562 * 14 13 12 16 16 C 1.38025 * 120.22144 * 359.73437 * 15 14 13 17 17 C 1.39579 * 119.99506 * 0.52382 * 16 15 14 18 18 C 1.47855 * 120.11154 * 179.76621 * 17 16 15 19 19 O 1.21559 * 119.99753 * 179.44348 * 18 17 16 20 20 N 1.34774 * 120.00004 * 359.71541 * 18 17 16 21 21 C 1.46504 * 119.99852 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.47126 * 180.02562 * 21 20 18 23 23 C 1.38674 * 120.41716 * 269.72048 * 22 21 20 24 24 C 1.38628 * 118.41766 * 179.78143 * 23 22 21 25 25 C 1.38224 * 119.16455 * 0.51414 * 24 23 22 26 26 N 1.31858 * 120.76078 * 359.72339 * 25 24 23 27 27 C 1.31885 * 121.72480 * 0.02562 * 26 25 24 28 28 C 1.38596 * 119.99857 * 33.35153 * 13 12 10 29 29 H 0.97006 * 119.99907 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47147 * 59.99326 * 9 7 2 31 31 H 1.09006 * 109.46682 * 299.99968 * 9 7 2 32 32 H 0.97003 * 119.99467 * 5.27213 * 12 10 9 33 33 H 1.08000 * 119.88869 * 359.97438 * 14 13 12 34 34 H 1.07996 * 119.88973 * 180.02562 * 15 14 13 35 35 H 1.07995 * 120.00287 * 180.25582 * 16 15 14 36 36 H 0.96991 * 120.00278 * 359.97438 * 20 18 17 37 37 H 1.09004 * 109.47065 * 299.99931 * 21 20 18 38 38 H 1.09004 * 109.47366 * 59.99737 * 21 20 18 39 39 H 1.08003 * 120.78862 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.41586 * 180.21653 * 24 23 22 41 41 H 1.07992 * 119.62261 * 179.74760 * 25 24 23 42 42 H 1.08004 * 119.61488 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.10723 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2300 -3.6447 0.0005 11 8 3.4226 -3.4231 0.0001 12 7 1.7808 -4.9153 0.0011 13 6 2.6854 -5.9774 0.1125 14 6 2.4292 -7.1794 -0.5366 15 6 3.3191 -8.2315 -0.4293 16 6 4.4708 -8.0937 0.3186 17 6 4.7347 -6.8925 0.9787 18 6 5.9651 -6.7438 1.7849 19 8 6.1978 -5.6934 2.3507 20 7 6.8315 -7.7711 1.8880 21 6 8.0504 -7.6239 2.6873 22 6 8.8408 -8.9061 2.6388 23 6 8.6284 -9.8980 3.5844 24 6 9.3752 -11.0627 3.4979 25 6 10.3077 -11.1914 2.4858 26 7 10.4864 -10.2251 1.6066 27 6 9.7905 -9.1058 1.6552 28 6 3.8364 -5.8306 0.8704 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 0.8304 -5.0937 -0.0758 33 1 1.5313 -7.2920 -1.1261 34 1 3.1148 -9.1630 -0.9363 35 1 5.1658 -8.9167 0.3967 36 1 6.6476 -8.6080 1.4337 37 1 8.6534 -6.8104 2.2838 38 1 7.7830 -7.4003 3.7200 39 1 7.8957 -9.7678 4.3672 40 1 9.2336 -11.8575 4.2153 41 1 10.8964 -12.0939 2.4139 42 1 9.9651 -8.3364 0.9177 43 1 4.0368 -4.8976 1.3761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143200818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:22 Heat of formation + Delta-G solvation = -9.697808 kcal Electronic energy + Delta-G solvation = -26992.638917 eV Core-core repulsion = 23002.617522 eV Total energy + Delta-G solvation = -3990.021394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82457 -40.31924 -39.33739 -37.73639 -35.52720 -34.32019 -33.00350 -32.88851 -32.04238 -31.01173 -30.07492 -28.39362 -26.95852 -24.06434 -24.05200 -23.87915 -22.36022 -22.23450 -20.59958 -19.75225 -18.48863 -17.54471 -16.91697 -16.61527 -16.45543 -16.19904 -16.11688 -15.62230 -15.22491 -15.11588 -14.84479 -14.46965 -14.29232 -14.00669 -13.94159 -13.59788 -13.51659 -13.42908 -13.17649 -12.89147 -12.51099 -12.17205 -12.07782 -11.89321 -11.48362 -11.33204 -10.78872 -10.72168 -10.44875 -10.14814 -10.03860 -9.99033 -9.93158 -9.52135 -9.35933 -9.31661 -9.01347 -8.75336 -8.47830 -7.92697 -6.10134 -4.10029 0.50653 0.76052 0.84542 1.39993 2.80677 2.90661 3.32898 3.39832 3.40651 3.48085 3.48483 3.63221 3.91733 3.98102 4.20685 4.32749 4.46588 4.46640 4.51321 4.60711 4.79001 4.92303 5.00283 5.10801 5.19979 5.28684 5.30600 5.37970 5.46312 5.55935 5.59314 5.75731 5.80560 6.08926 6.10352 6.17608 6.26047 6.36715 6.45969 6.61026 7.04567 7.18050 7.22264 7.28156 7.47172 7.81826 7.93841 8.10310 8.26412 8.96416 9.01752 9.55513 11.02109 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002049 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.286696 B =13663.505109 C =14864.052746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.077 0.923 9 C 0.007 3.993 10 C 0.511 3.489 11 O -0.516 6.516 12 N -0.691 5.691 13 C 0.161 3.839 14 C -0.131 4.131 15 C -0.107 4.107 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.561 3.439 19 O -0.523 6.523 20 N -0.728 5.728 21 C 0.165 3.835 22 C -0.159 4.159 23 C -0.056 4.056 24 C -0.175 4.175 25 C 0.103 3.897 26 N -0.486 5.486 27 C 0.119 3.881 28 C -0.065 4.065 29 H 0.262 0.738 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.409 0.591 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.400 0.600 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 -27.156 4.525 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.095 0.905 9 C -0.032 4.032 10 C 0.302 3.698 11 O -0.389 6.389 12 N -0.338 5.338 13 C 0.065 3.935 14 C -0.153 4.153 15 C -0.126 4.126 16 C -0.138 4.138 17 C -0.123 4.123 18 C 0.349 3.651 19 O -0.398 6.398 20 N -0.382 5.382 21 C 0.042 3.958 22 C -0.161 4.161 23 C -0.083 4.083 24 C -0.195 4.195 25 C -0.054 4.054 26 N -0.194 5.194 27 C -0.039 4.039 28 C -0.086 4.086 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.176 0.824 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.435 -26.074 4.300 29.645 hybrid contribution -0.901 0.350 0.386 1.041 sum 12.534 -25.723 4.686 28.996 Atomic orbital electron populations 1.69963 1.06044 1.26940 1.50992 1.25001 0.94937 0.99571 0.95037 0.86354 0.80407 0.82808 0.77484 1.19383 1.20980 1.20948 1.21188 0.94364 0.88910 1.50399 0.90475 1.19289 0.93983 0.90083 0.99862 1.22405 0.91591 0.82935 0.72826 1.90605 1.17803 1.84037 1.46440 1.44228 1.09707 1.05283 1.74537 1.17847 0.92126 0.88536 0.95040 1.21135 1.01205 0.93153 0.99766 1.20784 0.93954 0.98589 0.99259 1.21068 0.97885 0.96191 0.98627 1.19638 0.95823 0.95265 1.01550 1.18338 0.83004 0.83203 0.80554 1.90838 1.75713 1.27089 1.46201 1.45914 1.22379 1.16766 1.53182 1.20096 0.84943 0.93658 0.97127 1.20940 0.99923 0.97361 0.97920 1.21619 0.97189 0.92240 0.97214 1.22200 0.97917 0.98840 1.00493 1.22888 0.95109 0.97276 0.90103 1.67781 1.24749 1.01273 1.25562 1.22832 0.90645 0.94599 0.95780 1.21384 0.92429 0.99136 0.95636 0.92881 0.93068 0.92893 0.75475 0.85297 0.85372 0.86243 0.76462 0.89912 0.90130 0.84451 0.84476 0.82582 0.82408 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.68 8.92 -34.44 -0.31 -14.99 16 8 H 0.08 2.33 6.75 -52.48 -0.35 1.98 16 9 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 10 C 0.51 11.41 7.56 -10.99 -0.08 11.33 16 11 O -0.52 -13.32 13.15 5.54 0.07 -13.25 16 12 N -0.69 -11.71 5.34 -9.89 -0.05 -11.76 16 13 C 0.16 2.55 6.27 -83.74 -0.53 2.03 16 14 C -0.13 -1.58 9.95 -39.31 -0.39 -1.97 16 15 C -0.11 -1.08 10.02 -39.67 -0.40 -1.48 16 16 C -0.12 -1.25 9.54 -39.16 -0.37 -1.62 16 17 C -0.12 -1.71 5.87 -104.99 -0.62 -2.33 16 18 C 0.56 8.11 7.77 -12.33 -0.10 8.01 16 19 O -0.52 -9.87 16.35 5.31 0.09 -9.78 16 20 N -0.73 -7.13 5.50 -62.42 -0.34 -7.48 16 21 C 0.17 1.43 5.83 -5.19 -0.03 1.40 16 22 C -0.16 -1.13 5.27 -104.48 -0.55 -1.68 16 23 C -0.06 -0.33 9.86 -39.28 -0.39 -0.72 16 24 C -0.17 -0.91 10.11 -39.44 -0.40 -1.30 16 25 C 0.10 0.66 11.18 -17.55 -0.20 0.46 16 26 N -0.49 -4.21 10.36 -13.25 -0.14 -4.35 16 27 C 0.12 0.93 10.86 -17.55 -0.19 0.74 16 28 C -0.06 -1.14 8.20 -38.98 -0.32 -1.46 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.41 5.48 8.82 -40.82 -0.36 5.12 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.86 6.40 -52.49 -0.34 0.52 16 36 H 0.40 2.95 6.49 -40.82 -0.27 2.68 16 37 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.16 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 43 H 0.15 3.25 6.00 -52.49 -0.32 2.94 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -36.61 376.57 -9.09 -45.71 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.99 Total: 5.47 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -5.12 Total: -2.08 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.20 Total: -48.94 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.61 -9.09 -45.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.008 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds