Wall clock time and date at job start Tue Mar 31 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00372 * 2 1 4 4 H 1.48501 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46927 * 299.99806 * 3 2 1 6 6 H 1.48490 * 109.47148 * 59.99593 * 3 2 1 7 7 C 1.37878 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47527 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99686 * 359.97438 * 10 9 7 12 12 N 1.34765 * 120.00493 * 179.97438 * 10 9 7 13 13 C 1.39955 * 120.00329 * 185.27455 * 12 10 9 14 14 C 1.38991 * 119.99832 * 213.33141 * 13 12 10 15 15 C 1.38211 * 120.22351 * 180.02562 * 14 13 12 16 16 C 1.38025 * 120.22144 * 359.73437 * 15 14 13 17 17 C 1.39579 * 119.99506 * 0.52382 * 16 15 14 18 18 C 1.47855 * 120.11154 * 179.76621 * 17 16 15 19 19 O 1.21559 * 119.99753 * 179.44348 * 18 17 16 20 20 N 1.34774 * 120.00004 * 359.71541 * 18 17 16 21 21 C 1.46504 * 119.99852 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.47126 * 180.02562 * 21 20 18 23 23 C 1.38674 * 120.41716 * 269.72048 * 22 21 20 24 24 C 1.38628 * 118.41766 * 179.78143 * 23 22 21 25 25 C 1.38224 * 119.16455 * 0.51414 * 24 23 22 26 26 N 1.31858 * 120.76078 * 359.72339 * 25 24 23 27 27 C 1.31885 * 121.72480 * 0.02562 * 26 25 24 28 28 C 1.38596 * 119.99857 * 33.35153 * 13 12 10 29 29 H 0.97006 * 119.99907 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47147 * 59.99326 * 9 7 2 31 31 H 1.09006 * 109.46682 * 299.99968 * 9 7 2 32 32 H 0.97003 * 119.99467 * 5.27213 * 12 10 9 33 33 H 1.08000 * 119.88869 * 359.97438 * 14 13 12 34 34 H 1.07996 * 119.88973 * 180.02562 * 15 14 13 35 35 H 1.07995 * 120.00287 * 180.25582 * 16 15 14 36 36 H 0.96991 * 120.00278 * 359.97438 * 20 18 17 37 37 H 1.09004 * 109.47065 * 299.99931 * 21 20 18 38 38 H 1.09004 * 109.47366 * 59.99737 * 21 20 18 39 39 H 1.08003 * 120.78862 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.41586 * 180.21653 * 24 23 22 41 41 H 1.07992 * 119.62261 * 179.74760 * 25 24 23 42 42 H 1.08004 * 119.61488 * 179.97438 * 27 26 25 43 43 H 1.07998 * 120.10723 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2300 -3.6447 0.0005 11 8 3.4226 -3.4231 0.0001 12 7 1.7808 -4.9153 0.0011 13 6 2.6854 -5.9774 0.1125 14 6 2.4292 -7.1794 -0.5366 15 6 3.3191 -8.2315 -0.4293 16 6 4.4708 -8.0937 0.3186 17 6 4.7347 -6.8925 0.9787 18 6 5.9651 -6.7438 1.7849 19 8 6.1978 -5.6934 2.3507 20 7 6.8315 -7.7711 1.8880 21 6 8.0504 -7.6239 2.6873 22 6 8.8408 -8.9061 2.6388 23 6 8.6284 -9.8980 3.5844 24 6 9.3752 -11.0627 3.4979 25 6 10.3077 -11.1914 2.4858 26 7 10.4864 -10.2251 1.6066 27 6 9.7905 -9.1058 1.6552 28 6 3.8364 -5.8306 0.8704 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 0.8304 -5.0937 -0.0758 33 1 1.5313 -7.2920 -1.1261 34 1 3.1148 -9.1630 -0.9363 35 1 5.1658 -8.9167 0.3967 36 1 6.6476 -8.6080 1.4337 37 1 8.6534 -6.8104 2.2838 38 1 7.7830 -7.4003 3.7200 39 1 7.8957 -9.7678 4.3672 40 1 9.2336 -11.8575 4.2153 41 1 10.8964 -12.0939 2.4139 42 1 9.9651 -8.3364 0.9177 43 1 4.0368 -4.8976 1.3761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143200818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:22 Heat of formation + Delta-G solvation = -36.318300 kcal Electronic energy + Delta-G solvation = -26993.793268 eV Core-core repulsion = 23002.617522 eV Total energy + Delta-G solvation = -3991.175746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72852 -41.25368 -40.60701 -39.03359 -36.44617 -35.75192 -35.16375 -33.54614 -32.71161 -31.97909 -31.64394 -30.00418 -27.72737 -25.97367 -24.85023 -24.54913 -23.60551 -22.93562 -21.70096 -21.30137 -19.57931 -18.57319 -18.05137 -17.89149 -17.48105 -17.38638 -17.12748 -17.00951 -16.48552 -16.32721 -16.13238 -15.78225 -15.33428 -15.11720 -14.83653 -14.60619 -14.50958 -14.25747 -14.20020 -14.08197 -13.96430 -13.66698 -13.25104 -12.88793 -12.81679 -12.66402 -12.60991 -12.53851 -12.10848 -11.50817 -11.49140 -11.27871 -10.80911 -10.66107 -10.63503 -10.50337 -10.31187 -10.07231 -9.91980 -9.16550 -8.29873 -6.36671 -0.20846 -0.00159 0.28824 0.30865 1.36166 1.37345 1.52258 1.61778 1.89356 2.01359 2.21834 2.43076 2.86530 2.87299 3.05649 3.39358 3.62098 3.70402 3.84411 3.89918 3.99523 4.06177 4.07714 4.18108 4.25070 4.45575 4.48336 4.51324 4.61736 4.69753 4.83214 4.90928 4.99766 5.14686 5.18996 5.20583 5.25170 5.26405 5.30929 5.34303 5.48704 5.68919 5.71610 5.96269 5.99313 6.39244 6.56251 6.76252 6.97560 7.07961 7.26015 7.37079 8.82222 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.002049 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.286696 B =13663.505109 C =14864.052746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.011 3.989 10 C 0.515 3.485 11 O -0.561 6.561 12 N -0.671 5.671 13 C 0.127 3.873 14 C -0.113 4.113 15 C -0.093 4.093 16 C -0.094 4.094 17 C -0.135 4.135 18 C 0.557 3.443 19 O -0.582 6.582 20 N -0.703 5.703 21 C 0.167 3.833 22 C -0.159 4.159 23 C -0.057 4.057 24 C -0.166 4.166 25 C 0.096 3.904 26 N -0.514 5.514 27 C 0.107 3.893 28 C -0.101 4.101 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.426 0.574 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.164 0.836 36 H 0.415 0.585 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.158 0.842 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.755 -31.249 3.884 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.069 0.931 9 C -0.028 4.028 10 C 0.306 3.694 11 O -0.438 6.438 12 N -0.318 5.318 13 C 0.032 3.968 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.138 4.138 18 C 0.345 3.655 19 O -0.463 6.463 20 N -0.356 5.356 21 C 0.044 3.956 22 C -0.162 4.162 23 C -0.084 4.084 24 C -0.185 4.185 25 C -0.061 4.061 26 N -0.223 5.223 27 C -0.050 4.050 28 C -0.122 4.122 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.265 0.735 33 H 0.180 0.820 34 H 0.198 0.802 35 H 0.181 0.819 36 H 0.254 0.746 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.171 0.829 40 H 0.185 0.815 41 H 0.197 0.803 42 H 0.175 0.825 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.228 -30.271 3.647 33.236 hybrid contribution -0.792 1.393 0.611 1.715 sum 12.436 -28.878 4.258 31.729 Atomic orbital electron populations 1.70014 1.06896 1.28113 1.50943 1.25730 0.95892 1.02555 0.94406 0.85440 0.78419 0.79045 0.78403 1.20503 1.19355 1.19661 1.21358 0.93554 0.91340 1.51508 0.93089 1.19102 0.94032 0.90126 0.99539 1.21826 0.90259 0.84431 0.72896 1.90592 1.19251 1.85090 1.48873 1.43690 1.10930 1.03989 1.73236 1.18054 0.91888 0.89612 0.97229 1.21543 1.02460 0.91324 0.98050 1.21401 0.92326 0.99585 0.97741 1.21564 0.98591 0.95200 0.95924 1.19712 0.95300 0.96121 1.02711 1.18553 0.83643 0.83190 0.80080 1.90808 1.77068 1.29592 1.48820 1.45727 1.21610 1.16069 1.52191 1.20089 0.84374 0.94579 0.96604 1.20691 0.99962 0.96856 0.98689 1.21871 0.97471 0.92049 0.96969 1.22506 0.96635 0.99079 1.00308 1.23378 0.95441 0.97460 0.89801 1.67785 1.25561 1.01991 1.26973 1.22875 0.91086 0.94797 0.96269 1.21110 0.94934 0.98477 0.97699 0.92253 0.92915 0.93359 0.73457 0.81973 0.80201 0.81876 0.74637 0.91063 0.90360 0.82883 0.81500 0.80313 0.82475 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -32.60 8.92 25.60 0.23 -32.37 16 8 H 0.05 3.30 6.75 -2.91 -0.02 3.28 16 9 C 0.01 0.59 5.46 29.10 0.16 0.75 16 10 C 0.52 24.47 7.56 87.66 0.66 25.14 16 11 O -0.56 -31.46 13.15 -3.09 -0.04 -31.50 16 12 N -0.67 -23.40 5.34 -303.60 -1.62 -25.02 16 13 C 0.13 4.04 6.27 38.11 0.24 4.28 16 14 C -0.11 -2.32 9.95 22.44 0.22 -2.09 16 15 C -0.09 -1.36 10.02 22.21 0.22 -1.14 16 16 C -0.09 -1.62 9.54 22.54 0.22 -1.41 16 17 C -0.13 -3.88 5.87 -20.10 -0.12 -3.99 16 18 C 0.56 16.75 7.77 86.79 0.67 17.42 16 19 O -0.58 -24.07 16.35 -3.90 -0.06 -24.14 16 20 N -0.70 -13.27 5.50 -469.67 -2.58 -15.86 16 21 C 0.17 2.90 5.83 85.63 0.50 3.40 16 22 C -0.16 -2.08 5.27 -19.77 -0.10 -2.18 16 23 C -0.06 -0.54 9.86 22.47 0.22 -0.31 16 24 C -0.17 -1.19 10.11 22.36 0.23 -0.96 16 25 C 0.10 0.98 11.18 84.69 0.95 1.93 16 26 N -0.51 -8.24 10.36 -195.85 -2.03 -10.27 16 27 C 0.11 1.60 10.86 84.67 0.92 2.52 16 28 C -0.10 -3.78 8.20 22.66 0.19 -3.59 16 29 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 30 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.43 11.34 8.82 -92.71 -0.82 10.53 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.16 1.38 6.40 -2.91 -0.02 1.36 16 36 H 0.42 5.01 6.49 -92.71 -0.60 4.41 16 37 H 0.07 1.42 8.09 -2.38 -0.02 1.40 16 38 H 0.08 1.43 8.09 -2.38 -0.02 1.41 16 39 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.10 4.67 6.00 -2.91 -0.02 4.65 16 Total: -1.00 -88.03 376.57 1.49 -86.53 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.34 Total: 16.71 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.86 Total: 8.61 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -5.95 Total: -104.85 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -0.10 Total: -55.63 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -88.03 1.49 -86.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.216 kcal (2) G-P(sol) polarization free energy of solvation -88.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds