Wall clock time and date at job start Tue Mar 31 2020 22:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27658 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27573 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.28000 * 3 2 1 7 7 C 1.38805 * 119.99846 * 180.28098 * 2 1 3 8 8 H 1.08000 * 119.99635 * 359.71891 * 7 2 1 9 9 S 1.76192 * 119.99929 * 179.72260 * 7 2 1 10 10 C 1.81001 * 100.00053 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46896 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99843 * 179.97438 * 11 10 9 14 14 C 1.47299 * 135.91500 * 359.62727 * 13 11 10 15 15 C 1.52551 * 87.56719 * 153.98683 * 14 13 11 16 16 C 1.47292 * 135.91626 * 179.97438 * 13 11 10 17 17 C 1.53130 * 116.55945 * 268.67597 * 15 14 13 18 18 C 1.54692 * 104.56181 * 228.34242 * 17 15 14 19 19 N 1.48663 * 104.65996 * 23.68219 * 18 17 15 20 20 C 1.46897 * 110.99980 * 201.53580 * 19 18 17 21 21 H 1.09002 * 110.43861 * 174.42889 * 20 19 18 22 22 C 1.54633 * 110.48504 * 296.96333 * 20 19 18 23 23 C 1.54689 * 101.66760 * 143.39587 * 22 20 19 24 24 N 1.46759 * 105.53498 * 334.73886 * 23 22 20 25 25 C 1.34419 * 111.30060 * 16.92915 * 24 23 22 26 26 O 1.21284 * 124.93927 * 179.55818 * 25 24 23 27 27 C 1.48849 * 104.43401 * 321.21543 * 19 18 17 28 28 H 0.97000 * 120.00210 * 359.72456 * 1 2 3 29 29 H 1.08998 * 109.46924 * 299.99540 * 10 9 7 30 30 H 1.08996 * 109.46816 * 60.00287 * 10 9 7 31 31 H 1.08997 * 113.52078 * 268.63850 * 14 13 11 32 32 H 1.08999 * 113.51483 * 39.24906 * 14 13 11 33 33 H 1.09000 * 113.52196 * 320.76111 * 16 13 11 34 34 H 1.09008 * 113.51942 * 91.29948 * 16 13 11 35 35 H 1.09005 * 110.41474 * 347.10712 * 17 15 14 36 36 H 1.08995 * 110.42204 * 109.57157 * 17 15 14 37 37 H 1.08996 * 110.40088 * 142.47664 * 18 17 15 38 38 H 1.08998 * 110.39925 * 264.88524 * 18 17 15 39 39 H 1.08999 * 110.96863 * 261.59270 * 22 20 19 40 40 H 1.08997 * 110.96964 * 25.35791 * 22 20 19 41 41 H 1.08999 * 110.29293 * 215.68093 * 23 22 20 42 42 H 1.08999 * 110.21075 * 93.75927 * 23 22 20 43 43 H 0.97000 * 124.35100 * 196.94122 * 24 23 22 44 44 H 1.09001 * 110.47493 * 279.66850 * 27 19 18 45 45 H 1.09006 * 110.46923 * 157.06377 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4920 2.0498 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5508 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0059 9 16 3.7722 -1.2021 -0.0133 10 6 4.0865 -2.9846 -0.0182 11 6 5.5730 -3.2325 -0.0256 12 8 6.3440 -2.2963 -0.0269 13 7 6.0457 -4.4947 -0.0297 14 6 5.4571 -5.8449 -0.0224 15 6 6.7312 -6.3335 -0.7042 16 6 7.3763 -5.1262 -0.0374 17 6 6.7278 -6.3431 -2.2355 18 6 7.2604 -7.7446 -2.6168 19 7 6.9710 -8.5926 -1.4305 20 6 7.8368 -9.7791 -1.4078 21 1 7.6867 -10.3422 -0.4867 22 6 7.5622 -10.6730 -2.6393 23 6 8.9814 -11.1899 -2.9734 24 7 9.9032 -10.1807 -2.4388 25 6 9.2883 -9.3783 -1.5528 26 8 9.8201 -8.4661 -0.9561 27 6 7.2476 -7.7081 -0.2658 28 1 -0.4850 0.8400 0.0040 29 1 3.6474 -3.4334 0.8727 30 1 3.6399 -3.4297 -0.9073 31 1 5.3158 -6.2524 0.9787 32 1 4.5670 -5.9348 -0.6451 33 1 8.0980 -4.6125 -0.6726 34 1 7.7647 -5.3345 0.9596 35 1 5.7151 -6.2053 -2.6143 36 1 7.3884 -5.5672 -2.6222 37 1 6.7355 -8.1251 -3.4930 38 1 8.3336 -7.7054 -2.8031 39 1 6.8954 -11.4963 -2.3828 40 1 7.1567 -10.0871 -3.4641 41 1 9.1063 -11.2809 -4.0524 42 1 9.1548 -12.1521 -2.4917 43 1 10.8362 -10.1027 -2.6924 44 1 8.3180 -7.6667 -0.0641 45 1 6.7061 -8.0558 0.6141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147031550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:03 Heat of formation + Delta-G solvation = -39.123375 kcal Electronic energy + Delta-G solvation = -27083.057258 eV Core-core repulsion = 23227.203827 eV Total energy + Delta-G solvation = -3855.853431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39150 -41.37970 -39.54291 -37.63605 -37.21718 -34.68821 -33.12941 -31.72346 -30.38185 -29.82556 -27.93388 -27.67838 -27.12547 -25.81183 -23.36200 -22.64974 -21.01764 -20.81788 -19.80027 -19.40663 -18.39768 -18.03773 -17.77437 -17.20677 -16.98049 -16.90251 -16.79333 -16.17370 -15.73116 -15.46540 -15.30679 -15.01890 -14.92117 -14.76220 -14.36994 -14.25544 -13.89955 -13.62404 -13.56951 -13.38188 -13.15158 -13.03244 -12.87803 -12.70892 -12.48866 -12.43434 -12.35093 -12.09098 -11.87644 -11.76306 -11.48162 -11.23966 -11.18583 -10.94131 -10.57192 -10.08633 -9.81988 -9.31886 -9.03553 -8.52947 -6.24640 0.91450 1.29937 1.40516 1.47185 1.48416 1.51360 1.92846 2.23806 2.42683 2.64824 2.76131 2.84919 3.17809 3.38312 3.46102 3.53077 3.62807 3.79985 3.96549 4.08689 4.15048 4.17378 4.24146 4.36338 4.40431 4.49856 4.54139 4.56607 4.60580 4.71534 4.75194 4.80407 4.82987 4.86873 4.93807 5.06513 5.17287 5.17544 5.21460 5.63566 5.69646 5.81073 5.91226 6.02613 6.09836 6.56633 6.91905 7.00900 7.20026 8.59394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.002089 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.055165 B =13401.546278 C =13807.354483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.240 1.240 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.098 4.098 11 C 0.559 3.441 12 O -0.570 6.570 13 N -0.647 5.647 14 C 0.117 3.883 15 C -0.082 4.082 16 C 0.114 3.886 17 C -0.099 4.099 18 C 0.036 3.964 19 N -0.478 5.478 20 C 0.037 3.963 21 H 0.133 0.867 22 C -0.118 4.118 23 C 0.097 3.903 24 N -0.727 5.727 25 C 0.480 3.520 26 O -0.573 6.573 27 C 0.032 3.968 28 H 0.278 0.722 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.412 0.588 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.158 -31.850 -6.867 37.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.164 1.164 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.248 4.248 11 C 0.349 3.651 12 O -0.449 6.449 13 N -0.383 5.383 14 C -0.004 4.004 15 C -0.084 4.084 16 C -0.008 4.008 17 C -0.137 4.137 18 C -0.091 4.091 19 N -0.201 5.201 20 C -0.075 4.075 21 H 0.150 0.850 22 C -0.156 4.156 23 C -0.027 4.027 24 N -0.381 5.381 25 C 0.265 3.735 26 O -0.453 6.453 27 C -0.096 4.096 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.251 0.749 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.613 -29.938 -6.547 35.855 hybrid contribution 0.397 0.383 -0.017 0.552 sum 19.010 -29.555 -6.563 35.748 Atomic orbital electron populations 1.70009 1.07167 1.29055 1.48985 1.25544 0.95307 1.02171 0.92875 0.85879 0.80624 0.79702 0.80241 1.18644 1.18048 1.16371 1.22415 0.89899 0.96781 1.58416 0.91848 1.84740 1.06848 1.05851 1.97572 1.23130 0.95070 0.99573 1.07054 1.19569 0.89379 0.81071 0.75114 1.90681 1.59653 1.42841 1.51708 1.49685 1.11664 1.04188 1.72769 1.23341 0.97507 0.77284 1.02296 1.21937 0.96179 0.94006 0.96233 1.23058 0.86224 0.90065 1.01498 1.21960 1.02483 0.96761 0.92482 1.23232 0.98506 0.92295 0.95113 1.65825 1.46742 1.05031 1.02487 1.22910 0.86523 0.94492 1.03622 0.84989 1.22818 0.96953 0.99965 0.95889 1.22415 0.87666 0.91372 1.01205 1.46466 1.14530 1.33354 1.43778 1.22456 0.91617 0.81037 0.78371 1.90689 1.72470 1.31965 1.50220 1.23192 1.02251 0.89341 0.94806 0.91285 0.87164 0.87226 0.87010 0.88963 0.91920 0.88318 0.89776 0.92089 0.87825 0.94900 0.86135 0.89352 0.88136 0.88740 0.74938 0.90350 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.97 21.65 0.30 -55.91 16 2 C 0.05 2.79 5.50 84.86 0.47 3.25 16 3 Si 0.91 45.98 27.74 68.60 1.90 47.88 16 4 H -0.26 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -12.16 6.74 99.48 0.67 -11.49 16 7 C -0.53 -31.43 10.04 67.96 0.68 -30.75 16 8 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 9 S -0.18 -9.36 18.55 -56.49 -1.05 -10.41 16 10 C -0.10 -4.00 5.98 71.24 0.43 -3.58 16 11 C 0.56 21.99 8.09 87.66 0.71 22.70 16 12 O -0.57 -27.39 16.64 -3.04 -0.05 -27.44 16 13 N -0.65 -18.75 3.68 -858.07 -3.16 -21.91 16 14 C 0.12 2.27 7.70 83.62 0.64 2.92 16 15 C -0.08 -1.51 1.29 -52.45 -0.07 -1.58 16 16 C 0.11 2.76 7.92 83.53 0.66 3.42 16 17 C -0.10 -1.81 6.53 31.21 0.20 -1.60 16 18 C 0.04 0.52 5.52 86.54 0.48 1.00 16 19 N -0.48 -6.15 5.44 -856.96 -4.66 -10.82 16 20 C 0.04 0.35 3.13 44.91 0.14 0.49 16 21 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 22 C -0.12 -0.30 6.69 31.73 0.21 -0.08 16 23 C 0.10 0.08 7.79 86.91 0.68 0.75 16 24 N -0.73 -5.75 6.24 -459.46 -2.87 -8.62 16 25 C 0.48 7.06 6.07 87.90 0.53 7.60 16 26 O -0.57 -13.82 14.93 -3.04 -0.05 -13.86 16 27 C 0.03 0.50 5.77 86.01 0.50 0.99 16 28 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.11 4.20 8.14 -2.40 -0.02 4.18 16 30 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 31 H 0.11 1.70 7.99 -2.39 -0.02 1.68 16 32 H 0.09 1.68 7.95 -2.39 -0.02 1.67 16 33 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.10 16 35 H 0.08 1.50 7.86 -2.38 -0.02 1.49 16 36 H 0.06 1.30 7.83 -2.39 -0.02 1.28 16 37 H 0.10 1.11 7.20 -2.39 -0.02 1.09 16 38 H 0.03 0.58 6.22 -2.39 -0.01 0.56 16 39 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.09 0.30 6.45 -2.39 -0.02 0.29 16 41 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.41 2.72 8.96 -92.71 -0.83 1.89 16 44 H 0.08 1.58 5.03 -2.39 -0.01 1.57 16 45 H 0.10 1.28 7.86 -2.38 -0.02 1.26 16 Total: -1.00 -83.22 370.78 -3.21 -86.43 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.15 Total: 9.14 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.26 Total: 5.52 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -10.39 Total: -97.25 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.10 Total: -41.30 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.05 Total: -10.41 kcal Total: -83.22 -3.21 -86.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147031550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.307 kcal (2) G-P(sol) polarization free energy of solvation -83.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds