Wall clock time and date at job start Tue Mar 31 2020 22:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00200 * 2 1 4 4 H 1.48503 * 109.47244 * 240.00086 * 3 2 1 5 5 H 1.48495 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47224 * 120.00084 * 3 2 1 7 7 C 1.37877 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00214 * 275.65721 * 10 9 7 12 12 C 1.50692 * 109.47030 * 270.00071 * 11 10 9 13 13 C 1.38678 * 120.41697 * 269.71671 * 12 11 10 14 14 C 1.38633 * 118.42189 * 179.78353 * 13 12 11 15 15 C 1.38230 * 119.15908 * 0.51602 * 14 13 12 16 16 N 1.31857 * 120.76111 * 359.72660 * 15 14 13 17 17 C 1.31882 * 121.72672 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99622 * 95.65244 * 10 9 7 19 19 O 1.21540 * 119.99760 * 184.90813 * 18 10 9 20 20 C 1.47948 * 120.00321 * 4.91421 * 18 10 9 21 21 C 1.39213 * 120.19709 * 300.85054 * 20 18 10 22 22 C 1.38214 * 119.99677 * 180.02562 * 21 20 18 23 23 C 1.38371 * 120.39653 * 359.97438 * 22 21 20 24 24 C 1.38206 * 120.39816 * 359.97438 * 23 22 21 25 25 C 1.39218 * 119.99782 * 0.02562 * 24 23 22 26 26 C 1.47945 * 120.19482 * 179.97438 * 25 24 23 27 27 N 1.34774 * 120.00403 * 353.77214 * 26 25 24 28 28 O 1.21538 * 119.99789 * 173.77003 * 26 25 24 29 29 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46920 * 60.00124 * 9 7 2 31 31 H 1.09004 * 109.47144 * 299.99897 * 9 7 2 32 32 H 1.09006 * 109.46743 * 29.99980 * 11 10 9 33 33 H 1.08994 * 109.47033 * 149.99758 * 11 10 9 34 34 H 1.08006 * 120.78991 * 0.02587 * 13 12 11 35 35 H 1.07993 * 120.42131 * 180.22499 * 14 13 12 36 36 H 1.07993 * 119.61846 * 179.74898 * 15 14 13 37 37 H 1.08002 * 119.61241 * 179.97438 * 17 16 15 38 38 H 1.08006 * 120.00042 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.80028 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.79576 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00086 * 179.71951 * 24 23 22 42 42 H 0.96993 * 120.00152 * 359.97438 * 27 26 25 43 43 H 0.97003 * 120.00157 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.7739 -4.0883 -1.2620 12 6 1.8950 -5.1700 -1.8349 13 6 2.1173 -6.5001 -1.5114 14 6 1.2809 -7.4609 -2.0583 15 6 0.2671 -7.0650 -2.9105 16 7 0.0883 -5.7911 -3.1999 17 6 0.8608 -4.8498 -2.6935 18 6 2.5533 -4.1997 1.1621 19 8 3.4089 -5.0629 1.1729 20 6 1.8965 -3.7933 2.4240 21 6 1.9676 -2.4719 2.8564 22 6 1.3530 -2.0969 4.0362 23 6 0.6644 -3.0280 4.7936 24 6 0.5825 -4.3439 4.3792 25 6 1.1955 -4.7397 3.1935 26 6 1.1111 -6.1473 2.7461 27 7 0.5492 -7.0759 3.5450 28 8 1.5485 -6.4663 1.6579 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8367 -3.2596 -1.9673 33 1 3.7716 -4.4883 -1.0816 34 1 2.9205 -6.7805 -0.8459 35 1 1.4226 -8.5059 -1.8254 36 1 -0.3862 -7.8076 -3.3440 37 1 0.6839 -3.8167 -2.9540 38 1 2.5038 -1.7400 2.2704 39 1 1.4098 -1.0709 4.3685 40 1 0.1873 -2.7242 5.7137 41 1 0.0472 -5.0662 4.9776 42 1 0.2004 -6.8215 4.4136 43 1 0.4936 -7.9988 3.2515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148525978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:43 Heat of formation + Delta-G solvation = -2.371164 kcal Electronic energy + Delta-G solvation = -30025.301722 eV Core-core repulsion = 26035.598035 eV Total energy + Delta-G solvation = -3989.703687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30280 -39.67699 -38.38894 -37.53830 -35.07757 -33.63286 -33.02191 -32.04220 -31.36446 -30.72791 -30.42176 -27.47723 -26.10440 -23.98394 -23.26949 -23.03450 -22.57504 -21.58139 -20.40971 -19.03598 -17.62293 -16.82355 -16.71094 -16.55480 -16.30168 -15.71968 -15.61437 -15.01606 -14.92423 -14.66107 -14.41235 -14.36182 -14.13547 -13.70934 -13.27778 -13.14157 -12.80525 -12.68333 -12.50995 -12.29122 -12.10158 -11.71823 -11.63132 -11.51289 -11.09349 -11.04730 -10.92715 -10.73416 -10.23537 -9.85095 -9.64799 -9.51905 -9.35189 -9.09557 -9.05811 -8.69841 -8.68050 -8.57730 -8.43118 -7.67323 -6.20971 -4.29507 1.05822 1.48916 1.52444 1.76638 3.18445 3.20005 3.26552 3.28497 3.50981 3.64006 3.86364 4.20857 4.29082 4.40889 4.83690 4.94936 4.96951 5.09048 5.14360 5.22971 5.33960 5.38723 5.46672 5.54724 5.60986 5.72044 5.79857 5.98367 6.07740 6.18810 6.26287 6.31157 6.41235 6.59101 6.67651 6.74526 6.75800 6.83711 6.91340 7.13316 7.13893 7.22396 7.45954 7.55429 7.72375 8.02601 8.35260 8.37307 8.47863 8.76372 9.07533 9.37877 10.84854 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.006126 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.095053 B = 4569.562171 C = 7053.742915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.236 3.764 10 N -0.586 5.586 11 C 0.166 3.834 12 C -0.145 4.145 13 C -0.035 4.035 14 C -0.181 4.181 15 C 0.087 3.913 16 N -0.494 5.494 17 C 0.112 3.888 18 C 0.571 3.429 19 O -0.541 6.541 20 C -0.055 4.055 21 C -0.068 4.068 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.105 4.105 25 C -0.110 4.110 26 C 0.553 3.447 27 N -0.858 5.858 28 O -0.500 6.500 29 H 0.266 0.734 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.396 0.604 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -9.738 7.131 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.316 5.316 11 C 0.042 3.958 12 C -0.148 4.148 13 C -0.061 4.061 14 C -0.201 4.201 15 C -0.071 4.071 16 N -0.202 5.202 17 C -0.045 4.045 18 C 0.358 3.642 19 O -0.420 6.420 20 C -0.059 4.059 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.137 4.137 24 C -0.123 4.123 25 C -0.114 4.114 26 C 0.338 3.662 27 N -0.423 5.423 28 O -0.374 6.374 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.225 0.775 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.400 -9.830 5.787 11.414 hybrid contribution 0.516 0.571 1.075 1.322 sum 0.116 -9.259 6.863 11.526 Atomic orbital electron populations 1.69929 1.05980 1.27409 1.48790 1.24924 0.94773 0.99061 0.94692 0.86647 0.79622 0.82823 0.78952 1.20046 1.21168 1.20026 1.21435 0.93553 0.90365 1.52629 0.91924 1.19485 0.87675 0.82365 0.98824 1.48024 1.45481 1.34142 1.03994 1.20067 0.95247 0.94430 0.86085 1.21388 0.99070 0.95887 0.98469 1.21581 0.97875 0.92119 0.94567 1.22034 0.97674 1.00441 0.99918 1.22618 0.95969 0.93016 0.95462 1.67668 1.27066 1.01410 1.24068 1.22743 0.90142 0.98820 0.92789 1.17938 0.82195 0.80677 0.83404 1.90662 1.32908 1.31841 1.86564 1.19968 0.97184 0.93517 0.95255 1.21853 0.97080 0.94580 0.95118 1.21334 0.96243 0.99712 0.94347 1.21142 0.99471 0.93001 1.00075 1.21045 0.99462 0.96683 0.95144 1.19766 1.02034 0.93019 0.96559 1.18337 0.77573 0.85606 0.84698 1.43701 1.64902 1.11854 1.21873 1.90909 1.44766 1.81179 1.20550 0.92410 0.94909 0.94183 0.89120 0.89892 0.84577 0.85653 0.83628 0.82759 0.82501 0.85313 0.85674 0.85905 0.77506 0.76882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.42 13.29 55.43 0.74 -22.68 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 19.52 29.54 -169.99 -5.02 14.49 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -13.25 7.32 -34.44 -0.25 -13.50 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.58 4.70 -5.19 -0.02 5.55 16 10 N -0.59 -12.68 2.44 -177.51 -0.43 -13.11 16 11 C 0.17 3.20 5.61 -5.20 -0.03 3.17 16 12 C -0.14 -2.70 5.48 -104.49 -0.57 -3.27 16 13 C -0.03 -0.62 9.86 -39.27 -0.39 -1.01 16 14 C -0.18 -2.82 10.11 -39.44 -0.40 -3.22 16 15 C 0.09 1.36 11.18 -17.54 -0.20 1.16 16 16 N -0.49 -8.97 10.36 -13.25 -0.14 -9.11 16 17 C 0.11 2.08 10.86 -17.55 -0.19 1.89 16 18 C 0.57 12.55 5.60 -12.28 -0.07 12.48 16 19 O -0.54 -12.73 14.55 -18.06 -0.26 -13.00 16 20 C -0.06 -1.10 4.57 -104.63 -0.48 -1.58 16 21 C -0.07 -1.28 7.84 -39.23 -0.31 -1.59 16 22 C -0.10 -1.51 10.03 -39.54 -0.40 -1.90 16 23 C -0.12 -1.54 10.03 -39.54 -0.40 -1.93 16 24 C -0.10 -1.38 9.52 -39.23 -0.37 -1.75 16 25 C -0.11 -1.88 5.90 -104.63 -0.62 -2.50 16 26 C 0.55 9.35 7.96 -12.28 -0.10 9.25 16 27 N -0.86 -9.56 8.82 30.55 0.27 -9.29 16 28 O -0.50 -10.34 14.01 -18.05 -0.25 -10.60 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.04 1.01 5.86 -51.93 -0.30 0.71 16 32 H 0.09 1.66 8.02 -51.93 -0.42 1.25 16 33 H 0.08 1.58 7.31 -51.93 -0.38 1.20 16 34 H 0.14 2.56 7.95 -52.48 -0.42 2.14 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 38 H 0.16 3.21 6.00 -52.48 -0.32 2.89 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.11 6.45 -52.49 -0.34 0.77 16 42 H 0.40 3.11 6.91 -40.82 -0.28 2.83 16 43 H 0.40 3.85 8.93 -40.82 -0.36 3.48 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -32.32 368.31 -9.33 -41.66 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.90 Total: 13.19 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -4.88 Total: 2.89 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.44 Total: -54.19 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.52 Total: -23.59 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.32 -9.33 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148525978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.286 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds