Wall clock time and date at job start Tue Mar 31 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00200 * 2 1 4 4 H 1.48503 * 109.47244 * 240.00086 * 3 2 1 5 5 H 1.48495 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47224 * 120.00084 * 3 2 1 7 7 C 1.37877 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00214 * 275.65721 * 10 9 7 12 12 C 1.50692 * 109.47030 * 270.00071 * 11 10 9 13 13 C 1.38678 * 120.41697 * 269.71671 * 12 11 10 14 14 C 1.38633 * 118.42189 * 179.78353 * 13 12 11 15 15 C 1.38230 * 119.15908 * 0.51602 * 14 13 12 16 16 N 1.31857 * 120.76111 * 359.72660 * 15 14 13 17 17 C 1.31882 * 121.72672 * 359.97438 * 16 15 14 18 18 C 1.34777 * 119.99622 * 95.65244 * 10 9 7 19 19 O 1.21540 * 119.99760 * 184.90813 * 18 10 9 20 20 C 1.47948 * 120.00321 * 4.91421 * 18 10 9 21 21 C 1.39213 * 120.19709 * 300.85054 * 20 18 10 22 22 C 1.38214 * 119.99677 * 180.02562 * 21 20 18 23 23 C 1.38371 * 120.39653 * 359.97438 * 22 21 20 24 24 C 1.38206 * 120.39816 * 359.97438 * 23 22 21 25 25 C 1.39218 * 119.99782 * 0.02562 * 24 23 22 26 26 C 1.47945 * 120.19482 * 179.97438 * 25 24 23 27 27 N 1.34774 * 120.00403 * 353.77214 * 26 25 24 28 28 O 1.21538 * 119.99789 * 173.77003 * 26 25 24 29 29 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46920 * 60.00124 * 9 7 2 31 31 H 1.09004 * 109.47144 * 299.99897 * 9 7 2 32 32 H 1.09006 * 109.46743 * 29.99980 * 11 10 9 33 33 H 1.08994 * 109.47033 * 149.99758 * 11 10 9 34 34 H 1.08006 * 120.78991 * 0.02587 * 13 12 11 35 35 H 1.07993 * 120.42131 * 180.22499 * 14 13 12 36 36 H 1.07993 * 119.61846 * 179.74898 * 15 14 13 37 37 H 1.08002 * 119.61241 * 179.97438 * 17 16 15 38 38 H 1.08006 * 120.00042 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.80028 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.79576 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.00086 * 179.71951 * 24 23 22 42 42 H 0.96993 * 120.00152 * 359.97438 * 27 26 25 43 43 H 0.97003 * 120.00157 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.7739 -4.0883 -1.2620 12 6 1.8950 -5.1700 -1.8349 13 6 2.1173 -6.5001 -1.5114 14 6 1.2809 -7.4609 -2.0583 15 6 0.2671 -7.0650 -2.9105 16 7 0.0883 -5.7911 -3.1999 17 6 0.8608 -4.8498 -2.6935 18 6 2.5533 -4.1997 1.1621 19 8 3.4089 -5.0629 1.1729 20 6 1.8965 -3.7933 2.4240 21 6 1.9676 -2.4719 2.8564 22 6 1.3530 -2.0969 4.0362 23 6 0.6644 -3.0280 4.7936 24 6 0.5825 -4.3439 4.3792 25 6 1.1955 -4.7397 3.1935 26 6 1.1111 -6.1473 2.7461 27 7 0.5492 -7.0759 3.5450 28 8 1.5485 -6.4663 1.6579 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8367 -3.2596 -1.9673 33 1 3.7716 -4.4883 -1.0816 34 1 2.9205 -6.7805 -0.8459 35 1 1.4226 -8.5059 -1.8254 36 1 -0.3862 -7.8076 -3.3440 37 1 0.6839 -3.8167 -2.9540 38 1 2.5038 -1.7400 2.2704 39 1 1.4098 -1.0709 4.3685 40 1 0.1873 -2.7242 5.7137 41 1 0.0472 -5.0662 4.9776 42 1 0.2004 -6.8215 4.4136 43 1 0.4936 -7.9988 3.2515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148525978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:42 Heat of formation + Delta-G solvation = -23.087713 kcal Electronic energy + Delta-G solvation = -30026.200059 eV Core-core repulsion = 26035.598035 eV Total energy + Delta-G solvation = -3990.602024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71217 -41.02280 -39.85142 -38.84088 -36.80907 -34.90191 -34.70764 -33.61858 -32.72744 -31.96268 -31.69756 -29.32564 -27.63535 -25.36195 -24.88054 -24.41014 -24.06245 -22.95440 -21.65887 -20.46195 -18.90389 -18.63580 -18.10730 -17.84290 -17.75246 -17.29866 -17.03887 -16.51007 -16.39427 -16.08732 -15.77113 -15.66476 -15.52890 -15.09980 -14.69982 -14.45772 -14.29449 -14.18809 -14.06429 -13.88008 -13.54832 -13.28193 -13.19062 -12.92036 -12.74213 -12.64234 -12.42971 -12.31154 -12.01331 -11.72809 -11.03139 -10.83524 -10.65239 -10.60805 -10.54394 -10.46483 -9.95777 -9.91973 -9.79787 -9.42726 -8.16130 -6.31011 -0.20332 0.13428 0.30025 0.37055 1.44297 1.46520 1.53393 1.88917 1.97631 2.29811 2.46438 2.56481 2.92566 2.98923 3.13323 3.53247 3.65323 3.87575 3.91382 3.92579 3.96199 4.11291 4.12709 4.19296 4.44491 4.49049 4.52277 4.66505 4.72558 4.78089 4.85303 4.89701 5.00990 5.20934 5.23326 5.24327 5.41665 5.43482 5.53355 5.67890 5.78331 5.83019 5.90788 5.96101 6.07522 6.47971 6.58420 6.82521 7.00070 7.31937 7.38606 7.46581 8.89355 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008287 B = 0.006126 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3378.095053 B = 4569.562171 C = 7053.742915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.031 3.969 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.260 3.740 10 N -0.591 5.591 11 C 0.165 3.835 12 C -0.155 4.155 13 C -0.044 4.044 14 C -0.171 4.171 15 C 0.090 3.910 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.567 3.433 19 O -0.566 6.566 20 C -0.094 4.094 21 C -0.092 4.092 22 C -0.103 4.103 23 C -0.102 4.102 24 C -0.088 4.088 25 C -0.129 4.129 26 C 0.543 3.457 27 N -0.827 5.827 28 O -0.549 6.549 29 H 0.267 0.733 30 H 0.009 0.991 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.160 0.840 36 H 0.188 0.812 37 H 0.148 0.852 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.415 0.585 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -10.741 9.503 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.170 4.170 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.073 0.927 9 C 0.139 3.861 10 N -0.320 5.320 11 C 0.042 3.958 12 C -0.159 4.159 13 C -0.071 4.071 14 C -0.190 4.190 15 C -0.067 4.067 16 N -0.219 5.219 17 C -0.057 4.057 18 C 0.356 3.644 19 O -0.447 6.447 20 C -0.098 4.098 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.133 4.133 26 C 0.328 3.672 27 N -0.394 5.394 28 O -0.426 6.426 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.177 0.823 36 H 0.204 0.796 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.192 0.808 41 H 0.191 0.809 42 H 0.248 0.752 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -1.872 -10.850 8.203 13.731 hybrid contribution 0.925 0.768 0.432 1.278 sum -0.947 -10.083 8.635 13.309 Atomic orbital electron populations 1.70032 1.07266 1.28149 1.49822 1.25558 0.95378 1.01856 0.94199 0.85712 0.78475 0.79087 0.79068 1.20117 1.20826 1.19054 1.21493 0.93139 0.91013 1.52245 0.92669 1.19038 0.87475 0.82888 0.96700 1.48033 1.45196 1.33856 1.04953 1.20089 0.95301 0.94895 0.85509 1.21251 0.99398 0.96044 0.99175 1.21554 0.98308 0.92364 0.94825 1.22371 0.96437 1.01573 0.98638 1.23288 0.96043 0.92732 0.94628 1.67694 1.27174 1.02478 1.24554 1.22657 0.90590 0.98991 0.93419 1.18387 0.81815 0.80028 0.84169 1.90611 1.34041 1.32912 1.87102 1.19975 0.99722 0.94910 0.95213 1.21655 0.98787 0.93742 0.96881 1.21638 0.95734 1.01424 0.93282 1.21689 0.97399 0.92138 1.00766 1.21609 0.97538 0.97983 0.93458 1.20038 1.02543 0.92861 0.97840 1.18520 0.77651 0.86328 0.84670 1.43389 1.62763 1.11436 1.21799 1.90886 1.47170 1.81850 1.22729 0.92341 0.97316 0.95811 0.89096 0.90314 0.86047 0.82273 0.79560 0.83449 0.85494 0.83453 0.80786 0.80852 0.75205 0.75645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.60 13.29 21.45 0.28 -49.31 16 2 C 0.03 1.60 5.46 84.65 0.46 2.07 16 3 Si 0.95 40.60 29.54 68.60 2.03 42.63 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.54 -27.75 7.32 25.60 0.19 -27.56 16 8 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.26 13.06 4.70 85.63 0.40 13.46 16 10 N -0.59 -27.39 2.44 -833.80 -2.04 -29.42 16 11 C 0.17 6.91 5.61 85.63 0.48 7.39 16 12 C -0.16 -6.12 5.48 -19.78 -0.11 -6.23 16 13 C -0.04 -1.61 9.86 22.47 0.22 -1.39 16 14 C -0.17 -5.12 10.11 22.36 0.23 -4.89 16 15 C 0.09 2.68 11.18 84.69 0.95 3.63 16 16 N -0.51 -18.53 10.36 -195.85 -2.03 -20.56 16 17 C 0.10 3.88 10.86 84.67 0.92 4.80 16 18 C 0.57 26.51 5.60 86.82 0.49 26.99 16 19 O -0.57 -28.32 14.55 18.52 0.27 -28.05 16 20 C -0.09 -3.90 4.57 -19.87 -0.09 -3.99 16 21 C -0.09 -3.57 7.84 22.50 0.18 -3.40 16 22 C -0.10 -3.00 10.03 22.30 0.22 -2.78 16 23 C -0.10 -2.23 10.03 22.29 0.22 -2.01 16 24 C -0.09 -1.98 9.52 22.50 0.21 -1.77 16 25 C -0.13 -4.32 5.90 -19.87 -0.12 -4.44 16 26 C 0.54 17.98 7.96 86.82 0.69 18.67 16 27 N -0.83 -16.19 8.82 -175.54 -1.55 -17.74 16 28 O -0.55 -23.19 14.01 18.53 0.26 -22.93 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.01 0.48 8.11 -2.39 -0.02 0.46 16 31 H 0.02 1.28 5.86 -2.38 -0.01 1.26 16 32 H 0.09 3.66 8.02 -2.38 -0.02 3.64 16 33 H 0.08 3.28 7.31 -2.39 -0.02 3.27 16 34 H 0.12 4.82 7.95 -2.91 -0.02 4.80 16 35 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.15 5.74 8.06 -2.91 -0.02 5.72 16 38 H 0.13 5.56 6.00 -2.91 -0.02 5.54 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.17 2.06 6.45 -2.91 -0.02 2.04 16 42 H 0.42 4.72 6.91 -92.71 -0.64 4.08 16 43 H 0.41 6.84 8.93 -92.71 -0.83 6.01 16 Total: -1.00 -75.62 368.31 2.38 -73.24 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.39 Total: 33.60 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.55 Total: 18.55 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -5.33 Total: -117.04 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: 0.53 Total: -50.98 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -75.62 2.38 -73.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148525978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.150 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds