Wall clock time and date at job start Tue Mar 31 2020 22:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99531 * 2 1 4 4 H 1.48501 * 109.47236 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47130 * 299.99535 * 3 2 1 6 6 H 1.48499 * 109.47197 * 59.99814 * 3 2 1 7 7 C 1.38811 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99843 * 160.73875 * 7 2 1 9 9 N 1.36929 * 119.99953 * 340.73284 * 7 2 1 10 10 C 1.43425 * 120.63313 * 155.64198 * 9 7 2 11 11 C 1.55327 * 116.24158 * 269.37673 * 10 9 7 12 12 C 1.55193 * 108.87405 * 319.46180 * 11 10 9 13 13 O 1.39640 * 110.56693 * 322.14556 * 12 11 10 14 14 C 1.42376 * 108.63299 * 101.17058 * 13 12 11 15 15 H 1.09005 * 108.62384 * 28.56071 * 14 13 12 16 16 C 1.53000 * 108.51302 * 146.41240 * 14 13 12 17 17 N 1.46502 * 109.47164 * 302.11950 * 16 14 13 18 18 C 1.34770 * 119.99832 * 179.97438 * 17 16 14 19 19 O 1.21276 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.52994 * 109.47088 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47135 * 179.97438 * 21 20 18 23 23 N 1.29028 * 124.91623 * 90.00263 * 22 21 20 24 24 C 1.31782 * 117.12903 * 179.97438 * 23 22 21 25 25 C 1.33646 * 114.49751 * 359.97438 * 24 23 22 26 26 S 1.70978 * 124.91988 * 269.69741 * 22 21 20 27 27 C 1.46923 * 113.79298 * 267.44755 * 14 13 12 28 28 H 0.97001 * 120.00441 * 0.02562 * 1 2 3 29 29 H 1.08998 * 108.12893 * 31.13480 * 10 9 7 30 30 H 1.09000 * 108.12746 * 147.62087 * 10 9 7 31 31 H 1.09002 * 109.57088 * 79.27749 * 11 10 9 32 32 H 1.09002 * 109.57207 * 199.65054 * 11 10 9 33 33 H 1.09007 * 109.25170 * 82.42524 * 12 11 10 34 34 H 1.09001 * 109.26189 * 201.86450 * 12 11 10 35 35 H 1.09003 * 109.47100 * 62.11566 * 16 14 13 36 36 H 1.09001 * 109.47438 * 182.11670 * 16 14 13 37 37 H 0.96999 * 119.99452 * 359.97438 * 17 16 14 38 38 H 1.09003 * 109.46992 * 300.00330 * 20 18 17 39 39 H 1.09001 * 109.47045 * 60.00127 * 20 18 17 40 40 H 1.09003 * 109.47517 * 300.00061 * 21 20 18 41 41 H 1.09001 * 109.47031 * 60.00172 * 21 20 18 42 42 H 1.07996 * 122.75511 * 180.02562 * 24 23 22 43 43 H 1.07997 * 126.03853 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.99368 * 176.11861 * 27 14 13 45 45 H 1.08997 * 109.99373 * 297.40154 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0449 -1.2284 -0.3080 9 7 1.3832 -2.3546 0.3924 10 6 1.8494 -3.6318 -0.0642 11 6 1.2154 -4.1648 -1.3782 12 6 -0.3040 -3.8488 -1.3667 13 8 -0.8283 -4.0074 -0.0822 14 6 -0.9696 -2.7220 0.5134 15 1 -1.1326 -1.9884 -0.2763 16 6 -2.2000 -2.7405 1.4226 17 7 -3.3817 -3.1063 0.6378 18 6 -4.5879 -3.1869 1.2337 19 8 -4.6949 -2.9572 2.4197 20 6 -5.8036 -3.5627 0.4262 21 6 -7.0337 -3.5825 1.3357 22 6 -8.2495 -3.9576 0.5282 23 7 -8.6715 -5.1631 0.3453 24 6 -9.7545 -5.3156 -0.3898 25 6 -10.2754 -4.1751 -0.8525 26 16 -9.2737 -2.8469 -0.2722 27 6 0.1942 -2.3055 1.3075 28 1 -0.4851 0.8400 -0.0004 29 1 2.9277 -3.5669 -0.2100 30 1 1.6627 -4.3622 0.7230 31 1 1.6833 -3.6771 -2.2334 32 1 1.3635 -5.2427 -1.4441 33 1 -0.4597 -2.8208 -1.6942 34 1 -0.8171 -4.5250 -2.0505 35 1 -2.0525 -3.4702 2.2188 36 1 -2.3448 -1.7518 1.8582 37 1 -3.2960 -3.2904 -0.3107 38 1 -5.9512 -2.8324 -0.3694 39 1 -5.6588 -4.5510 -0.0100 40 1 -6.8858 -4.3130 2.1311 41 1 -7.1787 -2.5943 1.7724 42 1 -10.1863 -6.2829 -0.6005 43 1 -11.1569 -4.0836 -1.4697 44 1 0.0497 -1.2901 1.6763 45 1 0.3381 -2.9887 2.1445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150751089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:34 Heat of formation + Delta-G solvation = -10.605059 kcal Electronic energy + Delta-G solvation = -27180.306959 eV Core-core repulsion = 23325.690175 eV Total energy + Delta-G solvation = -3854.616784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.03153 -39.56662 -38.74002 -35.05498 -34.61130 -33.96882 -32.19155 -31.21594 -29.97568 -28.64837 -26.70111 -25.37156 -25.07223 -23.38858 -22.35318 -20.81104 -20.19955 -19.93651 -19.59874 -18.27823 -17.19864 -16.84971 -16.11400 -15.81544 -15.59534 -15.48262 -14.92106 -14.78394 -14.46360 -14.20336 -14.05936 -13.86340 -13.47892 -13.29839 -12.97931 -12.70420 -12.50621 -12.29856 -12.19352 -11.92886 -11.77986 -11.43727 -11.31573 -11.21433 -10.87710 -10.75926 -10.47906 -10.17066 -10.00025 -9.90667 -9.77072 -9.69357 -9.63829 -9.51049 -9.15011 -8.82086 -8.68539 -8.52356 -6.84110 -5.94507 -3.32945 0.41414 1.08222 1.47873 2.55176 2.85469 3.31025 3.40348 3.41575 3.42689 3.95431 4.41648 4.63298 4.69884 4.82524 4.87087 4.94848 5.17251 5.19449 5.22411 5.26378 5.40137 5.64671 5.70887 5.80315 5.82801 5.90629 5.92568 5.99966 6.12849 6.31520 6.39791 6.46319 6.55594 6.65316 6.69083 6.79977 6.90928 6.94335 7.10335 7.30915 7.46970 7.70410 7.79839 8.11607 8.30052 8.46387 9.04980 9.73126 10.27425 11.14603 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.002310 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.935474 B =12119.681196 C =12864.789318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.161 3.839 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.369 6.369 14 C 0.060 3.940 15 H 0.107 0.893 16 C 0.121 3.879 17 N -0.712 5.712 18 C 0.511 3.489 19 O -0.549 6.549 20 C -0.135 4.135 21 C -0.029 4.029 22 C 0.057 3.943 23 N -0.475 5.475 24 C 0.039 3.961 25 C -0.266 4.266 26 S 0.122 5.878 27 C 0.143 3.857 28 H 0.255 0.745 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.104 0.896 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.990 -7.070 -3.425 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.032 3.968 11 C -0.213 4.213 12 C -0.011 4.011 13 O -0.288 6.288 14 C 0.002 3.998 15 H 0.125 0.875 16 C -0.004 4.004 17 N -0.362 5.362 18 C 0.297 3.703 19 O -0.428 6.428 20 C -0.176 4.176 21 C -0.070 4.070 22 C -0.221 4.221 23 N -0.189 5.189 24 C -0.112 4.112 25 C -0.405 4.405 26 S 0.376 5.624 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.192 0.808 43 H 0.194 0.806 44 H 0.122 0.878 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.897 -6.276 -2.313 18.172 hybrid contribution 0.021 0.065 -1.134 1.136 sum -16.875 -6.211 -3.446 18.309 Atomic orbital electron populations 1.69870 1.05200 1.25569 1.54669 1.24900 0.95318 0.98352 1.01061 0.86200 0.79394 0.83766 0.77252 1.20390 1.21862 1.21522 1.19305 0.93686 0.85170 1.39503 0.91259 1.44116 1.34158 1.01471 1.51047 1.20369 0.95903 0.87796 0.92766 1.23582 0.96989 0.99075 1.01684 1.22345 0.93397 1.00711 0.84620 1.87518 1.83259 1.29081 1.28940 1.22204 0.93925 0.84880 0.98817 0.87541 1.21715 0.83528 1.00679 0.94440 1.45922 1.07418 1.69566 1.13328 1.20371 0.84478 0.77381 0.88070 1.90694 1.86008 1.50351 1.15739 1.21624 0.92423 1.04492 0.99093 1.20009 0.86599 1.04252 0.96153 1.27208 1.01849 0.90977 1.02018 1.66310 1.13454 1.22216 1.16940 1.21845 0.92779 0.99702 0.96846 1.27106 1.07470 0.95237 1.10728 1.84161 1.20413 1.12632 1.45180 1.20748 0.85446 1.01404 0.90619 0.93536 0.94906 0.95024 0.92503 0.93181 0.91911 0.93121 0.91984 0.90357 0.76524 0.88735 0.88281 0.87778 0.88635 0.80775 0.80635 0.87806 0.96243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.28 9.56 55.49 0.53 -22.75 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 20.65 29.60 -169.99 -5.03 15.62 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.36 9.62 -15.06 -0.14 -6.50 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -13.89 2.61 -174.50 -0.46 -14.34 16 10 C 0.16 3.35 5.32 -4.43 -0.02 3.33 16 11 C -0.17 -3.16 6.75 -24.34 -0.16 -3.33 16 12 C 0.07 1.22 6.38 38.32 0.24 1.47 16 13 O -0.37 -7.05 9.43 -31.94 -0.30 -7.35 16 14 C 0.06 1.20 1.98 -29.64 -0.06 1.14 16 15 H 0.11 2.37 5.24 -51.93 -0.27 2.10 16 16 C 0.12 2.16 5.25 -4.04 -0.02 2.14 16 17 N -0.71 -10.83 5.41 -60.29 -0.33 -11.16 16 18 C 0.51 7.54 7.83 -10.98 -0.09 7.45 16 19 O -0.55 -9.98 15.98 5.56 0.09 -9.89 16 20 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 21 C -0.03 -0.31 5.09 -27.89 -0.14 -0.45 16 22 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 23 N -0.47 -5.43 10.54 -11.86 -0.13 -5.55 16 24 C 0.04 0.35 11.35 -19.18 -0.22 0.13 16 25 C -0.27 -2.02 11.37 29.12 0.33 -1.69 16 26 S 0.12 1.04 23.18 -107.50 -2.49 -1.46 16 27 C 0.14 3.18 4.71 -4.93 -0.02 3.16 16 28 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.03 0.68 7.96 -51.93 -0.41 0.26 16 30 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.40 5.45 8.26 -40.82 -0.34 5.11 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -29.30 376.29 -9.79 -39.09 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.71 Total: 6.43 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.64 Total: 5.70 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.38 Total: -53.81 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.21 Total: -17.24 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.30 -9.79 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150751089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.489 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds