Wall clock time and date at job start Tue Mar 31 2020 22:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.46958 * 179.97438 * 21 20 18 23 23 C 1.33645 * 122.74851 * 125.00021 * 22 21 20 24 24 S 1.76198 * 107.92480 * 180.02562 * 23 22 21 25 25 C 1.70975 * 90.28353 * 0.02562 * 24 23 22 26 26 N 1.29025 * 110.16668 * 359.73360 * 25 24 23 27 27 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 28 28 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 30 30 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 31 31 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 32 32 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 33 33 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 34 34 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 35 35 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 36 36 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 37 37 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 38 38 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 39 39 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 40 40 H 1.08997 * 109.47092 * 299.99844 * 21 20 18 41 41 H 1.09005 * 109.47089 * 60.00058 * 21 20 18 42 42 H 1.08008 * 126.03576 * 359.97438 * 23 22 21 43 43 H 1.07995 * 124.91817 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.46167 * 149.28169 * 27 9 7 45 45 H 1.09004 * 109.45622 * 29.32335 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1233 -8.7243 -0.9575 22 6 8.1995 -9.2395 -1.8781 23 6 9.4700 -9.3902 -1.4919 24 16 10.3841 -10.0106 -2.8646 25 6 8.9672 -10.0049 -3.8215 26 7 7.9642 -9.5823 -3.1286 27 6 1.8755 -3.6165 0.2126 28 1 -0.4851 0.8399 -0.0004 29 1 -0.7245 -2.3819 -0.5672 30 1 0.1607 -1.3474 -1.7085 31 1 -0.4845 -3.1866 -3.0413 32 1 -0.1723 -4.3602 -1.7405 33 1 2.1329 -2.7067 -2.6870 34 1 1.5435 -3.9956 -3.7680 35 1 4.0224 -5.1357 0.8071 36 1 2.8405 -6.2164 0.0302 37 1 4.7832 -5.4960 -1.8890 38 1 5.9946 -7.8107 -2.5490 39 1 7.1762 -6.7306 -1.7710 40 1 7.5683 -8.4285 -0.0075 41 1 6.3868 -9.5092 -0.7850 42 1 9.8666 -9.1698 -0.5118 43 1 8.9178 -10.3150 -4.8548 44 1 1.0509 -4.3142 0.3591 45 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150802066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:29 Heat of formation + Delta-G solvation = -17.222261 kcal Electronic energy + Delta-G solvation = -26701.767005 eV Core-core repulsion = 22846.863278 eV Total energy + Delta-G solvation = -3854.903728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.34782 -39.59289 -38.73830 -35.28368 -34.62675 -33.68117 -32.13183 -31.50256 -30.26102 -28.54249 -26.23105 -25.53922 -25.20750 -24.06453 -22.51478 -20.86092 -20.18558 -19.87845 -19.52504 -18.26628 -17.18054 -16.94594 -16.29743 -16.06011 -15.91203 -15.51433 -15.10922 -14.96559 -14.66626 -14.18915 -13.88369 -13.69725 -13.62049 -13.53429 -13.10271 -12.97676 -12.61924 -12.28404 -12.15221 -12.07793 -11.76905 -11.40032 -11.24047 -11.21720 -10.98590 -10.87631 -10.66305 -10.24653 -10.02611 -9.90400 -9.84101 -9.80869 -9.76421 -9.69623 -9.17051 -8.89691 -8.82024 -8.45236 -6.77728 -5.85913 -3.30994 0.35399 1.02630 1.35862 2.42430 2.74183 3.30857 3.33326 3.39587 3.40452 3.86142 4.16773 4.42317 4.60564 4.73091 4.87114 4.92694 5.03386 5.18927 5.24800 5.34037 5.42613 5.55443 5.62310 5.68331 5.70594 5.79698 5.87235 5.95210 5.99386 6.04478 6.16627 6.26697 6.34411 6.51881 6.62339 6.69782 6.73992 6.81652 7.33781 7.35613 7.61062 7.63995 7.74664 8.20759 8.32846 8.37276 9.15035 9.79803 10.25974 11.21539 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.001930 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.749849 B =14505.141723 C =14930.369996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.265 4.265 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.395 6.395 14 C 0.067 3.933 15 H 0.051 0.949 16 C 0.132 3.868 17 N -0.720 5.720 18 C 0.511 3.489 19 O -0.549 6.549 20 C -0.132 4.132 21 C -0.028 4.028 22 C 0.068 3.932 23 C -0.253 4.253 24 S 0.109 5.891 25 C 0.024 3.976 26 N -0.465 5.465 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.403 0.597 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.044 0.956 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.292 -17.756 -8.103 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.005 3.995 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.371 5.371 18 C 0.297 3.703 19 O -0.428 6.428 20 C -0.173 4.173 21 C -0.068 4.068 22 C -0.063 4.063 23 C -0.392 4.392 24 S 0.361 5.639 25 C -0.275 4.275 26 N -0.179 5.179 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.196 0.804 43 H 0.216 0.784 44 H 0.062 0.938 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.487 -18.414 -7.819 26.571 hybrid contribution -0.208 1.804 0.069 1.818 sum 17.280 -16.609 -7.750 25.190 Atomic orbital electron populations 1.70068 1.05233 1.25579 1.53713 1.25054 0.95309 0.98436 1.00481 0.86289 0.79135 0.83636 0.77691 1.21416 1.21685 1.20403 1.19224 0.92378 0.84868 1.43001 0.91575 1.43834 1.31459 1.01549 1.54431 1.20996 0.88442 0.95441 0.89908 1.22775 0.97090 1.01327 1.00405 1.22009 0.92774 0.92193 0.91812 1.86076 1.70662 1.37938 1.36792 1.22625 0.94854 0.93930 0.88123 0.93101 1.21423 0.89028 0.96031 0.92721 1.46013 1.36358 1.31687 1.22999 1.20599 0.82516 0.79958 0.87215 1.90691 1.69699 1.58063 1.24323 1.21556 0.97258 0.98585 0.99891 1.19924 0.94462 0.97095 0.95319 1.20438 0.94115 1.00698 0.91085 1.26919 0.96762 1.11135 1.04349 1.84081 1.15738 1.59948 1.04150 1.28443 0.90933 1.03242 1.04837 1.66133 1.32592 1.13158 1.05977 1.21414 0.95139 0.88961 0.94653 0.93549 0.95465 0.90651 0.92112 0.92383 0.92083 0.91259 0.90279 0.91014 0.76301 0.88036 0.89121 0.89339 0.89182 0.80388 0.78359 0.93813 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.00 55.49 0.61 -24.92 16 2 C 0.01 0.17 4.89 -17.43 -0.09 0.08 16 3 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.27 -6.98 9.46 -15.06 -0.14 -7.12 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.21 2.23 -172.02 -0.38 -14.59 16 10 C 0.18 4.12 4.70 -3.19 -0.02 4.11 16 11 C -0.18 -3.30 5.79 -27.17 -0.16 -3.46 16 12 C 0.09 1.54 6.37 36.42 0.23 1.77 16 13 O -0.40 -6.94 9.38 -26.55 -0.25 -7.19 16 14 C 0.07 1.16 2.68 -25.78 -0.07 1.09 16 15 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 16 C 0.13 2.02 5.34 -4.04 -0.02 2.00 16 17 N -0.72 -9.54 5.49 -60.29 -0.33 -9.87 16 18 C 0.51 6.82 7.83 -10.98 -0.09 6.74 16 19 O -0.55 -9.22 15.98 5.56 0.09 -9.13 16 20 C -0.13 -1.32 5.60 -27.88 -0.16 -1.48 16 21 C -0.03 -0.27 5.00 -27.89 -0.14 -0.41 16 22 C 0.07 0.64 6.07 -84.22 -0.51 0.13 16 23 C -0.25 -1.92 11.07 29.12 0.32 -1.59 16 24 S 0.11 0.66 23.22 -107.50 -2.50 -1.84 16 25 C 0.02 0.17 12.23 51.58 0.63 0.80 16 26 N -0.46 -4.56 10.35 -11.90 -0.12 -4.68 16 27 C 0.13 2.61 5.12 -3.83 -0.02 2.59 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.03 0.70 8.04 -51.93 -0.42 0.28 16 30 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 33 H 0.06 1.19 7.40 -51.93 -0.38 0.80 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 4.68 8.46 -40.82 -0.35 4.33 16 38 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.83 7.99 -51.93 -0.41 0.41 16 41 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.20 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.06 1.14 7.98 -51.93 -0.41 0.72 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -31.75 380.39 -9.31 -41.06 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.91 Total: 4.04 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.22 Total: 5.23 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.23 Total: -54.07 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.16 Total: -16.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.50 Total: -1.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.75 -9.31 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150802066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.838 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds