Wall clock time and date at job start Tue Mar 31 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47142 * 275.55571 * 3 2 1 5 5 H 1.48498 * 109.47271 * 35.55479 * 3 2 1 6 6 H 1.48497 * 109.46815 * 155.55859 * 3 2 1 7 7 C 1.38805 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00677 * 336.58159 * 7 2 1 9 9 N 1.36944 * 119.99757 * 156.58736 * 7 2 1 10 10 C 1.43426 * 120.63161 * 320.48036 * 9 7 2 11 11 C 1.55325 * 116.24196 * 269.37022 * 10 9 7 12 12 C 1.55187 * 108.87611 * 319.47124 * 11 10 9 13 13 O 1.39800 * 110.45575 * 322.13702 * 12 11 10 14 14 C 1.42376 * 108.54159 * 101.32102 * 13 12 11 15 15 H 1.09006 * 108.61782 * 28.31456 * 14 13 12 16 16 C 1.53004 * 108.62299 * 146.22854 * 14 13 12 17 17 N 1.46500 * 109.46767 * 302.05562 * 16 14 13 18 18 C 1.34774 * 119.99556 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00337 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99898 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.47109 * 180.02562 * 20 18 17 22 22 C 1.50691 * 109.47096 * 180.02562 * 21 20 18 23 23 C 1.33644 * 122.75038 * 124.73271 * 22 21 20 24 24 S 1.76197 * 107.92380 * 179.97438 * 23 22 21 25 25 C 1.70980 * 90.28440 * 0.27854 * 24 23 22 26 26 N 1.29031 * 110.16458 * 359.83356 * 25 24 23 27 27 C 1.46921 * 113.68426 * 267.27597 * 14 13 12 28 28 H 0.97008 * 120.00028 * 359.97438 * 1 2 3 29 29 H 1.09002 * 108.12561 * 31.13749 * 10 9 7 30 30 H 1.09008 * 108.12116 * 147.61890 * 10 9 7 31 31 H 1.09006 * 109.56706 * 79.28272 * 11 10 9 32 32 H 1.08994 * 109.57327 * 199.64780 * 11 10 9 33 33 H 1.09003 * 109.25731 * 82.42159 * 12 11 10 34 34 H 1.08998 * 109.25622 * 201.86220 * 12 11 10 35 35 H 1.09003 * 109.46916 * 182.05510 * 16 14 13 36 36 H 1.08999 * 109.47083 * 62.05606 * 16 14 13 37 37 H 0.96998 * 120.00139 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.46571 * 60.00199 * 20 18 17 39 39 H 1.08999 * 109.47010 * 299.99998 * 20 18 17 40 40 H 1.09009 * 109.47057 * 299.99963 * 21 20 18 41 41 H 1.09003 * 109.46916 * 59.99734 * 21 20 18 42 42 H 1.08000 * 126.03435 * 0.03367 * 23 22 21 43 43 H 1.08003 * 124.91485 * 179.84654 * 25 24 23 44 44 H 1.09002 * 109.98660 * 176.19028 * 27 14 13 45 45 H 1.09000 * 109.98945 * 297.46197 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3803 2.1142 -1.3935 5 1 1.5113 2.6159 0.8141 6 1 3.6015 1.4090 0.5793 7 6 2.0101 -1.2022 -0.0005 8 1 1.5369 -2.0991 0.3708 9 7 3.2950 -1.2508 -0.4718 10 6 3.6765 -0.5000 -1.6328 11 6 3.5352 -1.2271 -2.9980 12 6 4.0012 -2.6983 -2.8338 13 8 5.1035 -2.7689 -1.9769 14 6 4.6541 -3.1971 -0.6955 15 1 3.7635 -3.8117 -0.8266 16 6 5.7479 -4.0544 -0.0555 17 7 6.0502 -5.1916 -0.9282 18 6 6.9895 -6.0878 -0.5661 19 8 7.5841 -5.9530 0.4823 20 6 7.3009 -7.2574 -1.4641 21 6 8.3946 -8.1147 -0.8240 22 6 8.7064 -9.2839 -1.7222 23 6 9.9400 -9.5475 -2.1637 24 16 9.8578 -10.9887 -3.1741 25 6 8.1716 -11.0887 -2.9090 26 7 7.7841 -10.1264 -2.1418 27 6 4.3309 -2.0914 0.2164 28 1 -0.4850 0.8401 0.0004 29 1 3.0696 0.4049 -1.6659 30 1 4.7176 -0.1992 -1.5149 31 1 2.4927 -1.2077 -3.3158 32 1 4.1552 -0.7287 -3.7431 33 1 3.1845 -3.2900 -2.4203 34 1 4.2767 -3.0990 -3.8093 35 1 5.4034 -4.4201 0.9118 36 1 6.6466 -3.4532 0.0824 37 1 5.5743 -5.2996 -1.7665 38 1 7.6452 -6.8912 -2.4313 39 1 6.4024 -7.8588 -1.6021 40 1 9.2933 -7.5135 -0.6857 41 1 8.0499 -8.4808 0.1431 42 1 10.8301 -8.9783 -1.9399 43 1 7.5246 -11.8477 -3.3236 44 1 3.9311 -2.4842 1.1512 45 1 5.2237 -1.4979 0.4134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150802067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:33 Heat of formation + Delta-G solvation = -6.581491 kcal Electronic energy + Delta-G solvation = -26816.611768 eV Core-core repulsion = 22962.169458 eV Total energy + Delta-G solvation = -3854.442309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.40018 -39.83431 -39.01352 -35.35255 -34.82777 -33.73027 -32.27238 -31.76849 -30.28910 -28.92278 -26.55005 -25.69316 -25.31687 -24.04409 -22.36051 -21.22464 -20.35968 -19.96594 -19.90457 -18.29959 -17.28901 -17.04457 -16.24253 -16.16163 -15.91186 -15.61685 -15.48173 -14.93310 -14.56536 -14.36438 -14.08734 -13.89496 -13.73780 -13.59368 -13.17569 -13.11308 -12.69180 -12.47035 -12.37447 -12.23539 -11.92591 -11.81432 -11.63899 -11.28235 -11.23715 -10.79754 -10.53852 -10.41347 -10.21250 -10.05500 -9.91041 -9.86771 -9.76258 -9.63587 -9.20634 -9.05169 -8.98002 -8.53049 -6.85922 -6.07987 -3.52490 0.32624 0.99937 1.33209 2.39212 2.66584 3.23586 3.29908 3.44310 3.51573 3.83072 4.23104 4.47764 4.55457 4.68334 4.75354 4.82809 4.89652 4.97097 5.16445 5.20979 5.33292 5.36128 5.40816 5.58778 5.64272 5.70850 5.74343 5.79550 5.84462 5.91067 5.97972 6.03398 6.14166 6.23883 6.46861 6.48907 6.56392 6.59687 6.77112 6.83863 7.32572 7.53442 7.60728 8.00659 8.24027 8.27186 8.92300 9.63126 10.07781 11.06866 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.001891 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.609711 B =14805.699477 C =15037.686776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.275 4.275 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.152 3.848 11 C -0.168 4.168 12 C 0.065 3.935 13 O -0.356 6.356 14 C 0.062 3.938 15 H 0.069 0.931 16 C 0.116 3.884 17 N -0.719 5.719 18 C 0.512 3.488 19 O -0.548 6.548 20 C -0.132 4.132 21 C -0.028 4.028 22 C 0.068 3.932 23 C -0.253 4.253 24 S 0.110 5.890 25 C 0.024 3.976 26 N -0.465 5.465 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.081 0.919 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.184 -20.273 -8.433 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.160 4.160 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.403 4.403 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.024 3.976 11 C -0.209 4.209 12 C -0.013 4.013 13 O -0.274 6.274 14 C 0.003 3.997 15 H 0.087 0.913 16 C -0.009 4.009 17 N -0.370 5.370 18 C 0.298 3.702 19 O -0.426 6.426 20 C -0.173 4.173 21 C -0.068 4.068 22 C -0.064 4.064 23 C -0.392 4.392 24 S 0.362 5.638 25 C -0.274 4.274 26 N -0.179 5.179 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.196 0.804 43 H 0.217 0.783 44 H 0.099 0.901 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.760 -20.590 -8.114 29.012 hybrid contribution -0.394 1.610 -0.060 1.658 sum 18.366 -18.981 -8.174 27.647 Atomic orbital electron populations 1.69887 1.06079 1.26941 1.50536 1.25526 0.95042 0.97974 0.97424 0.86877 0.80739 0.84437 0.77050 1.21338 1.22834 1.19373 1.18696 0.86514 0.94352 1.40719 0.90632 1.44099 1.07378 1.55231 1.25376 1.20619 0.97370 0.93668 0.85919 1.23494 1.00736 0.96640 1.00061 1.22457 0.88600 0.97147 0.93055 1.87634 1.30955 1.88508 1.20299 1.21996 0.95226 0.96179 0.86342 0.91286 1.21705 0.99176 0.86528 0.93472 1.45921 1.40307 1.26143 1.24671 1.20609 0.79248 0.83484 0.86865 1.90698 1.50923 1.76059 1.24934 1.21558 1.01247 0.95218 0.99261 1.19921 0.99479 0.90807 0.96587 1.20423 0.87895 0.97873 1.00181 1.26917 1.02827 1.02856 1.06575 1.84090 1.09040 1.24163 1.46503 1.28449 0.97128 1.01192 1.00667 1.66134 1.36428 1.03710 1.11627 1.21042 0.92963 0.92263 0.94974 0.92589 0.93954 0.94978 0.91555 0.92653 0.92324 0.92137 0.90322 0.90902 0.76367 0.89036 0.88046 0.89356 0.89167 0.80398 0.78334 0.90058 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.97 55.49 0.78 -25.85 16 2 C 0.04 1.18 5.27 -17.43 -0.09 1.09 16 3 Si 0.88 22.11 25.24 -169.99 -4.29 17.82 16 4 H -0.29 -7.03 6.74 56.52 0.38 -6.65 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.27 -7.38 9.93 -15.06 -0.15 -7.53 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 9 N -0.60 -13.71 2.16 -174.50 -0.38 -14.09 16 10 C 0.15 3.30 4.29 -4.44 -0.02 3.28 16 11 C -0.17 -3.09 6.75 -24.34 -0.16 -3.25 16 12 C 0.06 1.04 6.38 38.32 0.24 1.28 16 13 O -0.36 -5.80 9.44 -32.39 -0.31 -6.11 16 14 C 0.06 0.99 2.13 -29.64 -0.06 0.92 16 15 H 0.07 1.13 6.76 -51.93 -0.35 0.77 16 16 C 0.12 1.62 5.25 -4.04 -0.02 1.60 16 17 N -0.72 -8.79 5.41 -60.29 -0.33 -9.12 16 18 C 0.51 6.44 7.83 -10.98 -0.09 6.35 16 19 O -0.55 -8.81 15.98 5.56 0.09 -8.72 16 20 C -0.13 -1.24 5.60 -27.88 -0.16 -1.40 16 21 C -0.03 -0.26 5.00 -27.89 -0.14 -0.40 16 22 C 0.07 0.61 6.08 -84.23 -0.51 0.10 16 23 C -0.25 -1.83 11.07 29.12 0.32 -1.51 16 24 S 0.11 0.64 23.22 -107.50 -2.50 -1.86 16 25 C 0.02 0.16 12.23 51.59 0.63 0.79 16 26 N -0.47 -4.39 10.34 -11.90 -0.12 -4.52 16 27 C 0.11 2.12 5.58 -4.94 -0.03 2.09 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.04 1.02 3.45 -51.93 -0.18 0.84 16 30 H 0.03 0.67 7.99 -51.92 -0.41 0.26 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.98 6.66 -51.93 -0.35 0.64 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.40 4.24 8.26 -40.82 -0.34 3.90 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.09 0.79 7.98 -51.92 -0.41 0.38 16 41 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.20 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.08 1.49 8.00 -51.93 -0.42 1.08 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -32.92 374.86 -8.32 -41.24 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.68 Total: 2.12 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.23 Total: 3.42 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.05 Total: -53.57 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.29 Total: 17.82 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.50 Total: -1.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.92 -8.32 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150802067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.661 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds