Wall clock time and date at job start Tue Mar 31 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47142 * 275.55571 * 3 2 1 5 5 H 1.48498 * 109.47271 * 35.55479 * 3 2 1 6 6 H 1.48497 * 109.46815 * 155.55859 * 3 2 1 7 7 C 1.38805 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00677 * 336.58159 * 7 2 1 9 9 N 1.36944 * 119.99757 * 156.58736 * 7 2 1 10 10 C 1.43426 * 120.63161 * 320.48036 * 9 7 2 11 11 C 1.55325 * 116.24196 * 269.37022 * 10 9 7 12 12 C 1.55187 * 108.87611 * 319.47124 * 11 10 9 13 13 O 1.39800 * 110.45575 * 322.13702 * 12 11 10 14 14 C 1.42376 * 108.54159 * 101.32102 * 13 12 11 15 15 H 1.09006 * 108.61782 * 28.31456 * 14 13 12 16 16 C 1.53004 * 108.62299 * 146.22854 * 14 13 12 17 17 N 1.46500 * 109.46767 * 302.05562 * 16 14 13 18 18 C 1.34774 * 119.99556 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00337 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99898 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.47109 * 180.02562 * 20 18 17 22 22 C 1.50691 * 109.47096 * 180.02562 * 21 20 18 23 23 C 1.33644 * 122.75038 * 124.73271 * 22 21 20 24 24 S 1.76197 * 107.92380 * 179.97438 * 23 22 21 25 25 C 1.70980 * 90.28440 * 0.27854 * 24 23 22 26 26 N 1.29031 * 110.16458 * 359.83356 * 25 24 23 27 27 C 1.46921 * 113.68426 * 267.27597 * 14 13 12 28 28 H 0.97008 * 120.00028 * 359.97438 * 1 2 3 29 29 H 1.09002 * 108.12561 * 31.13749 * 10 9 7 30 30 H 1.09008 * 108.12116 * 147.61890 * 10 9 7 31 31 H 1.09006 * 109.56706 * 79.28272 * 11 10 9 32 32 H 1.08994 * 109.57327 * 199.64780 * 11 10 9 33 33 H 1.09003 * 109.25731 * 82.42159 * 12 11 10 34 34 H 1.08998 * 109.25622 * 201.86220 * 12 11 10 35 35 H 1.09003 * 109.46916 * 182.05510 * 16 14 13 36 36 H 1.08999 * 109.47083 * 62.05606 * 16 14 13 37 37 H 0.96998 * 120.00139 * 359.97438 * 17 16 14 38 38 H 1.08998 * 109.46571 * 60.00199 * 20 18 17 39 39 H 1.08999 * 109.47010 * 299.99998 * 20 18 17 40 40 H 1.09009 * 109.47057 * 299.99963 * 21 20 18 41 41 H 1.09003 * 109.46916 * 59.99734 * 21 20 18 42 42 H 1.08000 * 126.03435 * 0.03367 * 23 22 21 43 43 H 1.08003 * 124.91485 * 179.84654 * 25 24 23 44 44 H 1.09002 * 109.98660 * 176.19028 * 27 14 13 45 45 H 1.09000 * 109.98945 * 297.46197 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3803 2.1142 -1.3935 5 1 1.5113 2.6159 0.8141 6 1 3.6015 1.4090 0.5793 7 6 2.0101 -1.2022 -0.0005 8 1 1.5369 -2.0991 0.3708 9 7 3.2950 -1.2508 -0.4718 10 6 3.6765 -0.5000 -1.6328 11 6 3.5352 -1.2271 -2.9980 12 6 4.0012 -2.6983 -2.8338 13 8 5.1035 -2.7689 -1.9769 14 6 4.6541 -3.1971 -0.6955 15 1 3.7635 -3.8117 -0.8266 16 6 5.7479 -4.0544 -0.0555 17 7 6.0502 -5.1916 -0.9282 18 6 6.9895 -6.0878 -0.5661 19 8 7.5841 -5.9530 0.4823 20 6 7.3009 -7.2574 -1.4641 21 6 8.3946 -8.1147 -0.8240 22 6 8.7064 -9.2839 -1.7222 23 6 9.9400 -9.5475 -2.1637 24 16 9.8578 -10.9887 -3.1741 25 6 8.1716 -11.0887 -2.9090 26 7 7.7841 -10.1264 -2.1418 27 6 4.3309 -2.0914 0.2164 28 1 -0.4850 0.8401 0.0004 29 1 3.0696 0.4049 -1.6659 30 1 4.7176 -0.1992 -1.5149 31 1 2.4927 -1.2077 -3.3158 32 1 4.1552 -0.7287 -3.7431 33 1 3.1845 -3.2900 -2.4203 34 1 4.2767 -3.0990 -3.8093 35 1 5.4034 -4.4201 0.9118 36 1 6.6466 -3.4532 0.0824 37 1 5.5743 -5.2996 -1.7665 38 1 7.6452 -6.8912 -2.4313 39 1 6.4024 -7.8588 -1.6021 40 1 9.2933 -7.5135 -0.6857 41 1 8.0499 -8.4808 0.1431 42 1 10.8301 -8.9783 -1.9399 43 1 7.5246 -11.8477 -3.3236 44 1 3.9311 -2.4842 1.1512 45 1 5.2237 -1.4979 0.4134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150802067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:32 Heat of formation + Delta-G solvation = -29.880646 kcal Electronic energy + Delta-G solvation = -26817.622095 eV Core-core repulsion = 22962.169458 eV Total energy + Delta-G solvation = -3855.452637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26106 -40.82762 -40.15742 -37.05751 -36.01327 -34.49101 -33.86173 -33.53162 -31.05634 -30.32178 -27.71814 -27.20928 -26.28382 -25.01053 -23.78970 -22.54131 -21.87226 -21.19418 -20.47081 -18.86494 -18.84261 -18.21325 -17.52863 -17.46776 -17.17500 -16.82189 -16.37195 -16.09280 -15.92967 -15.70358 -15.36157 -14.94902 -14.71578 -14.69035 -14.26530 -14.12884 -14.02350 -13.94760 -13.78232 -13.67913 -13.11967 -12.99731 -12.77663 -12.64256 -12.43951 -12.33824 -12.03024 -11.97192 -11.74998 -11.62854 -11.32842 -10.96995 -10.60611 -10.58085 -10.43800 -10.38102 -10.06787 -9.72082 -8.76017 -8.24510 -5.64841 -0.17311 0.53362 0.83157 1.28776 1.38876 1.50126 1.67144 1.80599 2.25270 2.39368 2.92381 3.02081 3.21056 3.32293 3.79258 3.96779 3.99306 4.03816 4.16939 4.21312 4.27027 4.30854 4.40043 4.46943 4.56992 4.57359 4.60243 4.66140 4.67319 4.72416 4.83371 4.97883 5.00230 5.05329 5.07965 5.11472 5.16496 5.25900 5.26742 5.44911 5.92049 6.12829 6.28780 6.57009 6.80558 6.95384 7.26413 7.57443 8.05380 8.94421 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029386 B = 0.001891 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.609711 B =14805.699477 C =15037.686776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.011 4.011 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.265 1.265 7 C -0.257 4.257 8 H 0.046 0.954 9 N -0.610 5.610 10 C 0.144 3.856 11 C -0.166 4.166 12 C 0.069 3.931 13 O -0.354 6.354 14 C 0.074 3.926 15 H 0.066 0.934 16 C 0.126 3.874 17 N -0.713 5.713 18 C 0.512 3.488 19 O -0.585 6.585 20 C -0.119 4.119 21 C -0.024 4.024 22 C 0.048 3.952 23 C -0.261 4.261 24 S 0.152 5.848 25 C 0.017 3.983 26 N -0.499 5.499 27 C 0.110 3.890 28 H 0.264 0.736 29 H 0.018 0.982 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.193 0.807 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.516 -21.472 -10.331 31.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.235 1.235 6 H -0.190 1.190 7 C -0.387 4.387 8 H 0.064 0.936 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.207 4.207 12 C -0.009 4.009 13 O -0.272 6.272 14 C 0.015 3.985 15 H 0.084 0.916 16 C 0.001 3.999 17 N -0.364 5.364 18 C 0.300 3.700 19 O -0.466 6.466 20 C -0.159 4.159 21 C -0.064 4.064 22 C -0.083 4.083 23 C -0.400 4.400 24 S 0.405 5.595 25 C -0.280 4.280 26 N -0.214 5.214 27 C -0.014 4.014 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.249 0.751 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.211 0.789 43 H 0.242 0.758 44 H 0.099 0.901 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.126 -21.809 -10.050 31.983 hybrid contribution -1.055 1.861 0.495 2.196 sum 20.071 -19.947 -9.555 29.867 Atomic orbital electron populations 1.69992 1.07503 1.27494 1.53322 1.26071 0.95545 1.00911 0.98331 0.85912 0.79341 0.80819 0.77145 1.20558 1.23483 1.18975 1.18588 0.88081 0.93091 1.38922 0.93635 1.44193 1.06836 1.55909 1.26445 1.20714 0.97182 0.93228 0.87170 1.23451 1.00614 0.98290 0.98355 1.22485 0.88333 0.95374 0.94683 1.87645 1.30918 1.88459 1.20185 1.21707 0.95851 0.95077 0.85909 0.91588 1.21442 0.98052 0.86808 0.93559 1.45843 1.40305 1.25489 1.24809 1.21138 0.78418 0.83832 0.86618 1.90684 1.52270 1.76973 1.26681 1.21496 1.01578 0.93768 0.99096 1.19815 0.99381 0.91205 0.96036 1.20351 0.88646 0.98201 1.01106 1.27193 1.02847 1.03606 1.06349 1.83952 1.07831 1.22617 1.45094 1.28937 0.98333 1.00943 0.99800 1.66128 1.37368 1.04818 1.13050 1.21197 0.91962 0.92627 0.95564 0.92728 0.96405 0.93978 0.93055 0.90119 0.93391 0.88398 0.90384 0.91493 0.75120 0.87211 0.87489 0.89288 0.90973 0.78945 0.75798 0.90116 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.45 13.97 21.65 0.30 -57.14 16 2 C -0.01 -0.63 5.27 84.86 0.45 -0.18 16 3 Si 0.94 46.29 25.24 68.60 1.73 48.02 16 4 H -0.28 -13.25 6.74 99.48 0.67 -12.58 16 5 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.26 -14.04 9.93 84.03 0.83 -13.21 16 8 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 9 N -0.61 -27.63 2.16 -706.00 -1.52 -29.15 16 10 C 0.14 6.06 4.29 87.75 0.38 6.43 16 11 C -0.17 -5.75 6.75 32.14 0.22 -5.53 16 12 C 0.07 2.00 6.38 72.73 0.46 2.47 16 13 O -0.35 -10.55 9.44 -138.82 -1.31 -11.86 16 14 C 0.07 2.23 2.13 28.71 0.06 2.29 16 15 H 0.07 2.07 6.76 -2.38 -0.02 2.05 16 16 C 0.13 3.36 5.25 86.38 0.45 3.81 16 17 N -0.71 -16.13 5.41 -463.04 -2.51 -18.64 16 18 C 0.51 12.25 7.83 87.66 0.69 12.94 16 19 O -0.59 -18.55 15.98 -3.04 -0.05 -18.60 16 20 C -0.12 -2.06 5.60 29.85 0.17 -1.89 16 21 C -0.02 -0.43 5.00 29.85 0.15 -0.28 16 22 C 0.05 0.81 6.08 41.52 0.25 1.07 16 23 C -0.26 -3.32 11.07 66.78 0.74 -2.58 16 24 S 0.15 1.41 23.22 -56.49 -1.31 0.09 16 25 C 0.02 0.20 12.23 130.65 1.60 1.80 16 26 N -0.50 -8.74 10.34 -191.55 -1.98 -10.73 16 27 C 0.11 4.05 5.58 83.79 0.47 4.51 16 28 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 29 H 0.02 0.84 3.45 -2.39 -0.01 0.83 16 30 H 0.04 1.67 7.99 -2.38 -0.02 1.65 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 1.51 6.66 -2.39 -0.02 1.50 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 7.66 8.26 -92.71 -0.77 6.90 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.77 8.08 -2.39 -0.02 1.75 16 40 H 0.09 1.54 7.98 -2.38 -0.02 1.52 16 41 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 42 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.23 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.08 2.94 8.00 -2.39 -0.02 2.92 16 45 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -71.72 374.86 0.47 -71.25 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.20 Total: 15.13 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.91 Total: 11.64 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -5.71 Total: -115.66 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.36 Total: -30.46 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.73 Total: 48.02 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.31 Total: 0.09 kcal Total: -71.72 0.47 -71.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150802067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.365 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds