Wall clock time and date at job start Tue Mar 31 2020 22:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86809 * 119.99754 * 2 1 4 4 H 1.48500 * 109.46990 * 269.99716 * 3 2 1 5 5 H 1.48496 * 109.46885 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.46930 * 149.99670 * 3 2 1 7 7 C 1.38947 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99964 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00433 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00492 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99680 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00438 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47255 * 179.97438 * 12 10 9 14 14 C 1.46902 * 111.00010 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47411 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.47555 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00199 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 15 20 20 O 1.42899 * 109.46876 * 179.72354 * 19 17 16 21 21 C 1.35897 * 116.99793 * 179.97438 * 20 19 17 22 22 C 1.38778 * 120.04357 * 359.72176 * 21 20 19 23 23 C 1.38131 * 119.99403 * 179.74934 * 22 21 20 24 24 C 1.38250 * 120.07826 * 0.52819 * 23 22 21 25 25 C 1.38474 * 120.08843 * 359.74686 * 24 23 22 26 26 F 1.35100 * 119.99736 * 180.02562 * 25 24 23 27 27 C 1.38382 * 120.00251 * 359.97438 * 25 24 23 28 28 H 0.96997 * 120.00657 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99328 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47104 * 59.99618 * 12 10 9 31 31 H 1.09004 * 109.46967 * 300.00081 * 12 10 9 32 32 H 1.00894 * 111.00567 * 303.95626 * 13 12 10 33 33 H 1.08998 * 109.47017 * 59.99899 * 14 13 12 34 34 H 1.09011 * 109.46972 * 300.00341 * 14 13 12 35 35 H 1.08998 * 109.47382 * 59.99793 * 15 14 13 36 36 H 1.09002 * 109.47216 * 300.00230 * 15 14 13 37 37 H 0.97000 * 119.99484 * 359.97438 * 16 15 14 38 38 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 39 39 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 40 40 H 1.07997 * 119.99649 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.96155 * 180.27265 * 23 22 21 42 42 H 1.08002 * 119.95596 * 179.76838 * 24 23 22 43 43 H 1.08003 * 120.03986 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2033 0.0011 10 6 4.0539 -2.3704 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5608 -2.3703 0.0011 13 7 6.0505 -3.7553 0.0017 14 6 7.5190 -3.7944 0.0011 15 6 7.9905 -5.2499 0.0011 16 7 9.4550 -5.2890 0.0011 17 6 10.0975 -6.4737 0.0006 18 8 9.4633 -7.5075 0.0006 19 6 11.6040 -6.5139 0.0069 20 8 12.0442 -7.8734 0.0116 21 6 13.3862 -8.0872 0.0170 22 6 14.2615 -7.0103 0.0120 23 6 15.6253 -7.2288 0.0228 24 6 16.1202 -8.5197 0.0275 25 6 15.2499 -9.5968 0.0268 26 9 15.7355 -10.8575 0.0319 27 6 13.8829 -9.3819 0.0218 28 1 -0.4851 0.8400 -0.0004 29 1 3.8648 -0.3632 0.0007 30 1 5.9242 -1.8564 0.8911 31 1 5.9241 -1.8565 -0.8889 32 1 5.6751 -4.2713 0.7832 33 1 7.8963 -3.2899 0.8906 34 1 7.8956 -3.2909 -0.8894 35 1 7.6133 -5.7541 -0.8886 36 1 7.6140 -5.7538 0.8913 37 1 9.9621 -4.4622 0.0008 38 1 11.9845 -6.0118 -0.8826 39 1 11.9772 -6.0080 0.8973 40 1 13.8761 -6.0014 0.0042 41 1 16.3059 -6.3903 0.0233 42 1 17.1870 -8.6883 0.0321 43 1 13.2036 -10.2215 0.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150902008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:05 Heat of formation + Delta-G solvation = -145.531524 kcal Electronic energy + Delta-G solvation = -26567.816527 eV Core-core repulsion = 22141.135716 eV Total energy + Delta-G solvation = -4426.680811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.99366 -41.49790 -40.46488 -40.25057 -38.21779 -37.43742 -36.03569 -35.28756 -33.74265 -32.22205 -31.27973 -30.74221 -29.15661 -27.45454 -25.34488 -23.99765 -23.50801 -22.99394 -21.65464 -21.28622 -20.28891 -19.70876 -18.63275 -17.74017 -17.58153 -17.50878 -17.34143 -17.17213 -16.87068 -16.73363 -16.66039 -16.61338 -15.98590 -15.72465 -15.35072 -15.15143 -14.79214 -14.75312 -14.68193 -14.37452 -14.18238 -13.92634 -13.67549 -13.40957 -13.29936 -12.96199 -12.82230 -12.58846 -12.39880 -12.39122 -12.17042 -12.04673 -11.96271 -11.50211 -11.06695 -10.44883 -10.24247 -10.22728 -9.93885 -9.36657 -9.36047 -8.40223 -6.01924 0.08969 0.25301 1.31342 1.38022 1.38582 1.45910 1.46936 1.97090 2.24909 2.40364 2.56785 2.84405 3.16232 3.35029 3.42880 3.62225 3.79504 3.90376 3.95063 4.04922 4.08851 4.11430 4.14704 4.19649 4.28470 4.40338 4.47113 4.49216 4.61561 4.91291 4.95853 4.99360 5.07314 5.19649 5.27141 5.32127 5.53346 5.66290 5.89142 6.02360 6.20351 6.31759 6.47824 6.60620 6.89222 7.15069 7.40751 7.98250 8.77609 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042685 B = 0.001260 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.812872 B =22221.153352 C =22843.854702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.227 1.227 7 C -0.332 4.332 8 H 0.052 0.948 9 N -0.589 5.589 10 C 0.444 3.556 11 O -0.618 6.618 12 C 0.067 3.933 13 N -0.693 5.693 14 C 0.060 3.940 15 C 0.126 3.874 16 N -0.702 5.702 17 C 0.508 3.492 18 O -0.578 6.578 19 C 0.042 3.958 20 O -0.321 6.321 21 C 0.145 3.855 22 C -0.212 4.212 23 C -0.042 4.042 24 C -0.192 4.192 25 C 0.118 3.882 26 F -0.146 7.146 27 C -0.214 4.214 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.345 0.655 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.425 0.575 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.155 0.845 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 41.042 -3.357 1.053 41.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.214 4.214 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.150 1.150 7 C -0.462 4.462 8 H 0.070 0.930 9 N -0.231 5.231 10 C 0.232 3.768 11 O -0.503 6.503 12 C -0.066 4.066 13 N -0.327 5.327 14 C -0.069 4.069 15 C 0.001 3.999 16 N -0.357 5.357 17 C 0.294 3.706 18 O -0.457 6.457 19 C -0.035 4.035 20 O -0.234 6.234 21 C 0.100 3.900 22 C -0.230 4.230 23 C -0.060 4.060 24 C -0.211 4.211 25 C 0.099 3.901 26 F -0.125 7.125 27 C -0.233 4.233 28 H 0.088 0.912 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.263 0.737 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.189 0.811 41 H 0.192 0.808 42 H 0.173 0.827 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 39.787 -4.942 0.374 40.095 hybrid contribution -0.389 0.674 0.855 1.157 sum 39.398 -4.268 1.230 39.648 Atomic orbital electron populations 1.69813 1.08318 1.29304 1.50246 1.26168 0.96462 1.02887 0.95916 0.85325 0.79571 0.76367 0.79968 1.18130 1.20220 1.14961 1.19015 0.81697 0.94886 1.50553 0.92980 1.42002 1.05690 1.07673 1.67735 1.21117 0.91310 0.83241 0.81108 1.90563 1.71557 1.32982 1.55187 1.21620 0.89108 0.91197 1.04627 1.59865 1.08034 1.12741 1.52009 1.22079 0.86617 0.94696 1.03472 1.21088 0.79350 0.97611 1.01849 1.45444 1.06990 1.08506 1.74789 1.20701 0.90402 0.83573 0.75883 1.90788 1.69598 1.35067 1.50223 1.22769 0.90470 0.82586 1.07695 1.86123 1.20035 1.28655 1.88545 1.18766 0.82252 0.93724 0.95288 1.21750 0.94063 0.99230 1.07977 1.21271 0.94986 0.96761 0.92963 1.21423 1.01056 0.91878 1.06757 1.17543 0.91415 0.79574 1.01558 1.91492 1.88344 1.38770 1.93872 1.20366 0.94428 0.97063 1.11489 0.91156 0.77283 0.89762 0.86114 0.83609 0.91768 0.88170 0.92558 0.92738 0.73664 0.84797 0.84761 0.81052 0.80751 0.82693 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.96 21.66 0.30 -55.86 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.97 37.43 27.74 68.60 1.90 39.33 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 7 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 9 N -0.59 -26.82 5.09 -306.99 -1.56 -28.38 16 10 C 0.44 19.29 7.82 87.65 0.69 19.98 16 11 O -0.62 -34.06 15.78 -3.07 -0.05 -34.11 16 12 C 0.07 1.77 6.17 85.56 0.53 2.30 16 13 N -0.69 -18.06 6.12 -517.93 -3.17 -21.23 16 14 C 0.06 0.89 5.80 86.30 0.50 1.39 16 15 C 0.13 2.25 5.93 86.38 0.51 2.76 16 16 N -0.70 -7.80 5.56 -463.06 -2.57 -10.37 16 17 C 0.51 8.78 7.91 87.66 0.69 9.47 16 18 O -0.58 -17.76 16.50 16.00 0.26 -17.49 16 19 C 0.04 0.35 5.22 71.24 0.37 0.72 16 20 O -0.32 -5.73 9.67 -73.35 -0.71 -6.44 16 21 C 0.15 2.09 6.69 22.50 0.15 2.24 16 22 C -0.21 -1.36 9.04 22.37 0.20 -1.15 16 23 C -0.04 -0.21 10.04 22.25 0.22 0.02 16 24 C -0.19 -1.78 10.02 22.33 0.22 -1.56 16 25 C 0.12 1.83 7.30 22.36 0.16 1.99 16 26 F -0.15 -2.65 17.27 44.97 0.78 -1.88 16 27 C -0.21 -3.74 9.97 22.41 0.22 -3.52 16 28 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.39 14.30 5.76 -92.71 -0.53 13.77 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 32 H 0.35 10.06 8.43 -89.70 -0.76 9.30 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.42 0.65 8.47 -92.71 -0.79 -0.14 16 38 H 0.13 0.11 7.65 -2.38 -0.02 0.10 16 39 H 0.13 0.09 7.67 -2.39 -0.02 0.08 16 40 H 0.17 -0.23 6.30 -2.91 -0.02 -0.25 16 41 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 42 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -93.62 378.97 -0.07 -93.69 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -1.05 Total: 26.93 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.80 Total: 15.82 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -7.01 Total: -115.85 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.49 Total: -58.05 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.90 Total: 39.33 kcal Total: -93.62 -0.07 -93.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150902008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.846 kcal (2) G-P(sol) polarization free energy of solvation -93.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds