Wall clock time and date at job start Tue Mar 31 2020 22:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46973 * 300.00051 * 3 2 1 6 6 H 1.48495 * 109.47266 * 60.00121 * 3 2 1 7 7 C 1.38799 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00174 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99955 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00361 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00083 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46889 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46902 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47230 * 180.02562 * 16 15 14 18 18 C 1.46903 * 110.99973 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47008 * 179.97438 * 18 17 16 20 20 C 1.35449 * 126.77663 * 89.98335 * 19 18 17 21 21 C 1.41387 * 103.98917 * 180.02562 * 20 19 18 22 22 C 1.50694 * 126.80435 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49958 * 343.74850 * 22 21 20 24 24 C 1.52995 * 117.50195 * 275.08673 * 22 21 20 25 25 N 1.30173 * 106.39214 * 0.02562 * 21 20 19 26 26 O 1.20923 * 111.60616 * 359.97438 * 25 21 20 27 27 H 0.96998 * 120.00313 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46670 * 60.00206 * 10 9 7 29 29 H 1.09004 * 109.47235 * 300.00501 * 10 9 7 30 30 H 0.96999 * 119.99543 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.46805 * 60.00323 * 14 13 11 32 32 H 1.09000 * 109.46995 * 300.00281 * 14 13 11 33 33 H 1.09001 * 109.46954 * 60.00747 * 15 14 13 34 34 H 1.08998 * 109.46927 * 299.99819 * 15 14 13 35 35 H 1.09004 * 109.47006 * 59.99668 * 16 15 14 36 36 H 1.09004 * 109.47400 * 300.00308 * 16 15 14 37 37 H 1.00899 * 110.99751 * 56.04966 * 17 16 15 38 38 H 1.08998 * 109.46966 * 60.00285 * 18 17 16 39 39 H 1.08996 * 109.47029 * 300.00137 * 18 17 16 40 40 H 1.08005 * 128.00762 * 359.97438 * 20 19 18 41 41 H 1.09005 * 115.55017 * 129.41236 * 22 21 20 42 42 H 1.08998 * 117.49821 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.50048 * 145.02131 * 23 22 21 44 44 H 1.08998 * 117.50084 * 214.97900 * 24 22 21 45 45 H 1.09006 * 117.49384 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7151 -0.0003 15 6 3.5026 -8.6985 -0.0001 16 6 2.9661 -10.1313 -0.0007 17 7 4.0914 -11.0756 0.0000 18 6 3.6131 -12.4646 0.0001 19 6 4.7930 -13.4021 0.0002 20 6 5.4280 -13.9062 1.0852 21 6 6.4489 -14.7168 0.5377 22 6 7.4670 -15.5245 1.3005 23 6 7.6641 -15.1952 2.7816 24 6 8.7370 -14.8065 1.7613 25 7 6.3357 -14.6264 -0.7559 26 8 5.4218 -13.9009 -1.0733 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8010 -6.1835 -0.0006 31 1 1.7216 -7.8750 -0.8900 32 1 1.7222 -7.8752 0.8899 33 1 4.1111 -8.5384 0.8900 34 1 4.1112 -8.5384 -0.8901 35 1 2.3577 -10.2911 -0.8910 36 1 2.3571 -10.2917 0.8890 37 1 4.7059 -10.9051 0.7819 38 1 3.0095 -12.6410 -0.8902 39 1 3.0086 -12.6406 0.8898 40 1 5.2064 -13.7293 2.1274 41 1 7.5597 -16.5683 1.0004 42 1 7.0577 -14.3941 3.2041 43 1 7.8870 -16.0222 3.4558 44 1 9.6652 -15.3780 1.7647 45 1 8.8363 -13.7500 1.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:29 Heat of formation + Delta-G solvation = 42.428403 kcal Electronic energy + Delta-G solvation = -24436.905435 eV Core-core repulsion = 20584.588354 eV Total energy + Delta-G solvation = -3852.317081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.35966 -39.21174 -38.10593 -37.55502 -35.19313 -33.73259 -32.90549 -32.43175 -31.07837 -29.07863 -26.59655 -25.48460 -25.13105 -23.96407 -23.21267 -22.50152 -21.92714 -20.38908 -20.16731 -18.03859 -17.90570 -17.72995 -16.60717 -16.33980 -16.22872 -16.11890 -15.45212 -15.14478 -14.87238 -14.85980 -14.80392 -14.41911 -14.26043 -13.88393 -13.14462 -12.97474 -12.76894 -12.61768 -12.48822 -12.21258 -12.10916 -11.96713 -11.87933 -11.77294 -11.59406 -11.19290 -11.07080 -11.02187 -10.97910 -10.75846 -10.26200 -9.92187 -9.80812 -9.41849 -9.09313 -9.07960 -8.89497 -8.23503 -6.50305 -6.22117 -3.92599 0.96227 1.69290 2.58688 3.01559 3.09264 3.09501 3.21422 3.27671 3.32025 3.51726 3.59232 3.80558 4.01053 4.20118 4.22366 4.34836 4.45524 4.54029 4.58510 4.66496 4.75100 4.78007 4.84286 4.99286 5.03941 5.13240 5.17175 5.18170 5.20246 5.26000 5.33443 5.44401 5.46812 5.49713 5.53221 5.63599 5.82605 5.90939 5.93708 6.13932 6.28149 6.60960 6.69513 7.59682 7.69888 7.84889 8.35205 8.60695 9.23457 10.85416 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001267 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.018062 B =22089.915659 C =22722.090418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.063 3.937 17 N -0.686 5.686 18 C 0.136 3.864 19 C -0.019 4.019 20 C -0.225 4.225 21 C 0.047 3.953 22 C -0.089 4.089 23 C -0.162 4.162 24 C -0.162 4.162 25 N -0.358 5.358 26 O 0.112 5.888 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.346 0.654 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.170 0.830 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.441 -31.951 4.730 35.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.067 4.067 17 N -0.318 5.318 18 C 0.007 3.993 19 C -0.083 4.083 20 C -0.247 4.247 21 C -0.112 4.112 22 C -0.108 4.108 23 C -0.200 4.200 24 C -0.200 4.200 25 N -0.060 5.060 26 O 0.044 5.956 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.164 0.836 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.187 0.813 41 H 0.140 0.860 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.004 -32.702 2.994 35.320 hybrid contribution 1.890 1.422 1.682 2.902 sum 14.893 -31.281 4.676 34.959 Atomic orbital electron populations 1.70024 1.05961 1.27351 1.46965 1.24989 0.95016 0.99028 0.94525 0.86117 0.79594 0.81885 0.77904 1.19614 1.20552 1.20576 1.22914 0.94953 0.91642 1.58834 0.90864 1.85397 1.04987 0.96369 1.96716 1.23533 1.06557 0.95392 1.04946 1.20314 0.86520 0.86316 0.75123 1.90699 1.15396 1.85633 1.47506 1.45981 1.09978 1.05472 1.78003 1.21169 0.95795 0.80795 1.02449 1.21739 0.98250 0.93162 1.03587 1.21890 0.92040 0.90962 1.01762 1.60421 1.19452 1.01166 1.50757 1.20332 0.89878 0.85424 1.03693 1.24291 0.98463 0.99562 0.86033 1.22376 0.98520 1.02884 1.00907 1.22613 0.98529 1.00261 0.89764 1.20111 0.96173 0.98556 0.95938 1.23042 1.02412 1.03873 0.90645 1.23042 0.92864 1.01566 1.02540 1.73857 1.05297 1.10733 1.16097 1.84876 1.32478 1.45262 1.32990 0.92232 0.89236 0.89176 0.76780 0.91457 0.91734 0.91296 0.90112 0.89903 0.94219 0.83603 0.88121 0.91282 0.81287 0.85968 0.88236 0.87723 0.87810 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 9.76 7.85 -10.98 -0.09 9.68 16 12 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 13 N -0.74 -9.40 5.56 -60.30 -0.34 -9.73 16 14 C 0.12 1.28 5.67 -4.04 -0.02 1.25 16 15 C -0.13 -0.88 5.59 -26.73 -0.15 -1.03 16 16 C 0.06 0.36 5.68 -3.83 -0.02 0.33 16 17 N -0.69 -3.87 6.49 -115.06 -0.75 -4.61 16 18 C 0.14 0.66 6.25 -4.98 -0.03 0.63 16 19 C -0.02 -0.13 7.00 -35.31 -0.25 -0.38 16 20 C -0.22 -1.44 10.40 -39.38 -0.41 -1.85 16 21 C 0.05 0.38 6.95 -82.10 -0.57 -0.19 16 22 C -0.09 -0.54 6.33 -91.78 -0.58 -1.12 16 23 C -0.16 -0.64 10.05 -26.69 -0.27 -0.91 16 24 C -0.16 -0.80 10.24 -26.70 -0.27 -1.07 16 25 N -0.36 -3.74 12.07 33.42 0.40 -3.34 16 26 O 0.11 1.08 11.20 17.17 0.19 1.27 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.35 1.70 8.72 -39.29 -0.34 1.35 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.17 0.66 7.62 -52.48 -0.40 0.26 16 41 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.35 7.34 -51.93 -0.38 -0.03 16 43 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -36.05 401.27 -10.03 -46.07 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.93 Total: -0.77 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -2.24 Total: -10.42 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.06 Total: -43.07 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.28 Total: -10.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.05 -10.03 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.503 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds