Wall clock time and date at job start Tue Mar 31 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46973 * 300.00051 * 3 2 1 6 6 H 1.48495 * 109.47266 * 60.00121 * 3 2 1 7 7 C 1.38799 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00174 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99955 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47085 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00361 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00083 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46889 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46902 * 180.02562 * 15 14 13 17 17 N 1.46897 * 109.47230 * 180.02562 * 16 15 14 18 18 C 1.46903 * 110.99973 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47008 * 179.97438 * 18 17 16 20 20 C 1.35449 * 126.77663 * 89.98335 * 19 18 17 21 21 C 1.41387 * 103.98917 * 180.02562 * 20 19 18 22 22 C 1.50694 * 126.80435 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.49958 * 343.74850 * 22 21 20 24 24 C 1.52995 * 117.50195 * 275.08673 * 22 21 20 25 25 N 1.30173 * 106.39214 * 0.02562 * 21 20 19 26 26 O 1.20923 * 111.60616 * 359.97438 * 25 21 20 27 27 H 0.96998 * 120.00313 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46670 * 60.00206 * 10 9 7 29 29 H 1.09004 * 109.47235 * 300.00501 * 10 9 7 30 30 H 0.96999 * 119.99543 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.46805 * 60.00323 * 14 13 11 32 32 H 1.09000 * 109.46995 * 300.00281 * 14 13 11 33 33 H 1.09001 * 109.46954 * 60.00747 * 15 14 13 34 34 H 1.08998 * 109.46927 * 299.99819 * 15 14 13 35 35 H 1.09004 * 109.47006 * 59.99668 * 16 15 14 36 36 H 1.09004 * 109.47400 * 300.00308 * 16 15 14 37 37 H 1.00899 * 110.99751 * 56.04966 * 17 16 15 38 38 H 1.08998 * 109.46966 * 60.00285 * 18 17 16 39 39 H 1.08996 * 109.47029 * 300.00137 * 18 17 16 40 40 H 1.08005 * 128.00762 * 359.97438 * 20 19 18 41 41 H 1.09005 * 115.55017 * 129.41236 * 22 21 20 42 42 H 1.08998 * 117.49821 * 359.97438 * 23 22 21 43 43 H 1.09000 * 117.50048 * 145.02131 * 23 22 21 44 44 H 1.08998 * 117.50084 * 214.97900 * 24 22 21 45 45 H 1.09006 * 117.49384 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3305 -7.7151 -0.0003 15 6 3.5026 -8.6985 -0.0001 16 6 2.9661 -10.1313 -0.0007 17 7 4.0914 -11.0756 0.0000 18 6 3.6131 -12.4646 0.0001 19 6 4.7930 -13.4021 0.0002 20 6 5.4280 -13.9062 1.0852 21 6 6.4489 -14.7168 0.5377 22 6 7.4670 -15.5245 1.3005 23 6 7.6641 -15.1952 2.7816 24 6 8.7370 -14.8065 1.7613 25 7 6.3357 -14.6264 -0.7559 26 8 5.4218 -13.9009 -1.0733 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8010 -6.1835 -0.0006 31 1 1.7216 -7.8750 -0.8900 32 1 1.7222 -7.8752 0.8899 33 1 4.1111 -8.5384 0.8900 34 1 4.1112 -8.5384 -0.8901 35 1 2.3577 -10.2911 -0.8910 36 1 2.3571 -10.2917 0.8890 37 1 4.7059 -10.9051 0.7819 38 1 3.0095 -12.6410 -0.8902 39 1 3.0086 -12.6406 0.8898 40 1 5.2064 -13.7293 2.1274 41 1 7.5597 -16.5683 1.0004 42 1 7.0577 -14.3941 3.2041 43 1 7.8870 -16.0222 3.4558 44 1 9.6652 -15.3780 1.7647 45 1 8.8363 -13.7500 1.5123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:28 Heat of formation + Delta-G solvation = 16.731047 kcal Electronic energy + Delta-G solvation = -24438.019756 eV Core-core repulsion = 20584.588354 eV Total energy + Delta-G solvation = -3853.431402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.94820 -40.58731 -38.50147 -38.10608 -36.17910 -34.57898 -34.30408 -33.64181 -32.00320 -30.33425 -27.72360 -27.17746 -25.62431 -24.64916 -23.63146 -22.92002 -22.57617 -21.66269 -20.72308 -19.80579 -18.65055 -18.35580 -17.72188 -17.30588 -17.10651 -16.87293 -16.82542 -16.40833 -15.93890 -15.61932 -15.45509 -15.29384 -15.17356 -14.76857 -14.64360 -14.37365 -13.85428 -13.29809 -13.16940 -13.15134 -12.99851 -12.90530 -12.76449 -12.59985 -12.50056 -12.44485 -12.39496 -12.05881 -11.81730 -11.69912 -11.37260 -11.15149 -10.95286 -10.72302 -10.48351 -10.26230 -10.08680 -9.47820 -8.65753 -8.34132 -6.12033 0.42027 1.17067 1.28518 1.42135 1.48451 1.59475 1.63361 2.10440 2.27100 2.32887 2.70719 3.00294 3.08163 3.21432 3.34134 3.56510 3.83398 3.95987 3.98457 4.02251 4.06544 4.11462 4.17847 4.23746 4.32013 4.34774 4.37757 4.53015 4.58515 4.61316 4.69985 4.72499 4.77844 4.83512 4.93530 5.07007 5.08607 5.19456 5.19732 5.22159 5.43055 5.48942 5.87037 6.20880 6.33245 6.53779 7.07524 7.27180 7.28523 8.75411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.001267 C = 0.001232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.018062 B =22089.915659 C =22722.090418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.713 5.713 14 C 0.121 3.879 15 C -0.115 4.115 16 C 0.067 3.933 17 N -0.694 5.694 18 C 0.139 3.861 19 C -0.020 4.020 20 C -0.221 4.221 21 C 0.040 3.960 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.166 4.166 25 N -0.397 5.397 26 O 0.087 5.913 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.351 0.649 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.197 0.803 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.605 -32.350 6.062 36.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.003 4.003 15 C -0.153 4.153 16 C -0.062 4.062 17 N -0.327 5.327 18 C 0.010 3.990 19 C -0.084 4.084 20 C -0.243 4.243 21 C -0.118 4.118 22 C -0.129 4.129 23 C -0.180 4.180 24 C -0.204 4.204 25 N -0.103 5.103 26 O 0.023 5.977 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.170 0.830 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.214 0.786 41 H 0.140 0.860 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.212 -33.132 4.321 36.713 hybrid contribution 1.271 1.399 1.280 2.283 sum 16.484 -31.733 5.602 36.195 Atomic orbital electron populations 1.70185 1.07985 1.28547 1.48097 1.26114 0.95940 1.03285 0.93724 0.84909 0.78628 0.76363 0.78064 1.18020 1.19978 1.19924 1.23247 0.95365 0.92018 1.58762 0.89898 1.85572 1.10685 0.99290 1.97051 1.23384 1.03505 0.94454 1.06824 1.20062 0.86256 0.86753 0.75172 1.90688 1.17471 1.86148 1.50270 1.45753 1.10324 1.05269 1.75393 1.21330 0.97274 0.79898 1.01806 1.21603 0.96654 0.92736 1.04276 1.21803 0.92062 0.90171 1.02177 1.60351 1.19604 1.01462 1.51331 1.20428 0.89126 0.84556 1.04882 1.24740 0.98625 0.99473 0.85595 1.22709 0.97587 1.02035 1.02005 1.23110 0.99050 1.00151 0.89463 1.20244 0.96677 0.98448 0.97565 1.23163 1.01057 1.04297 0.89524 1.23093 0.93202 1.01046 1.03026 1.73851 1.06509 1.12314 1.17597 1.84823 1.32887 1.45809 1.34220 0.91994 0.87140 0.87250 0.74631 0.92450 0.92168 0.89838 0.90139 0.90221 0.93199 0.82993 0.88011 0.88951 0.78635 0.86008 0.87441 0.86050 0.86727 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.58 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 11 C 0.53 19.11 7.85 87.65 0.69 19.79 16 12 O -0.57 -25.91 15.86 -3.01 -0.05 -25.96 16 13 N -0.71 -16.63 5.56 -463.07 -2.57 -19.20 16 14 C 0.12 2.30 5.67 86.38 0.49 2.79 16 15 C -0.11 -1.25 5.59 30.59 0.17 -1.08 16 16 C 0.07 0.60 5.68 86.30 0.49 1.09 16 17 N -0.69 -6.25 6.49 -517.94 -3.36 -9.61 16 18 C 0.14 1.07 6.25 85.56 0.53 1.61 16 19 C -0.02 -0.26 7.00 25.04 0.18 -0.08 16 20 C -0.22 -2.49 10.40 22.40 0.23 -2.25 16 21 C 0.04 0.64 6.95 43.58 0.30 0.95 16 22 C -0.11 -1.25 6.33 -11.54 -0.07 -1.33 16 23 C -0.14 -0.83 10.05 30.62 0.31 -0.52 16 24 C -0.17 -1.45 10.24 30.62 0.31 -1.14 16 25 N -0.40 -8.52 12.07 -49.55 -0.60 -9.12 16 26 O 0.09 1.71 11.20 71.61 0.80 2.51 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.42 6.81 8.47 -92.71 -0.79 6.02 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.35 2.50 8.72 -89.69 -0.78 1.72 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.20 0.94 7.62 -2.91 -0.02 0.92 16 41 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.11 0.45 7.34 -2.39 -0.02 0.43 16 43 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -81.44 401.27 0.00 -81.44 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -0.55 Total: 13.68 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.18 Total: -13.94 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -6.25 Total: -93.51 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.75 Total: -23.44 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -81.44 0.00 -81.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.169 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds