Wall clock time and date at job start Tue Mar 31 2020 22:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48500 * 109.47212 * 149.99987 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00086 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99527 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99610 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00404 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00165 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47368 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47473 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47378 * 179.97438 * 16 15 14 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47041 * 179.97438 * 18 17 16 20 20 C 1.34334 * 126.16399 * 95.02443 * 19 18 17 21 21 O 1.34747 * 107.11367 * 180.02562 * 20 19 18 22 22 C 1.33975 * 107.75406 * 359.97438 * 21 20 19 23 23 C 1.50701 * 125.61648 * 180.02562 * 22 21 20 24 24 C 1.53004 * 117.49946 * 8.72703 * 23 22 21 25 25 C 1.52998 * 117.49961 * 300.06462 * 23 22 21 26 26 N 1.30254 * 108.76121 * 359.73319 * 22 21 20 27 27 H 0.97006 * 119.99515 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 60.00281 * 10 9 7 29 29 H 1.09000 * 109.47216 * 300.00170 * 10 9 7 30 30 H 0.97003 * 120.00304 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.47197 * 59.99913 * 14 13 11 32 32 H 1.09000 * 109.47175 * 300.00155 * 14 13 11 33 33 H 1.09004 * 109.47108 * 59.99956 * 15 14 13 34 34 H 1.09004 * 109.47368 * 300.00056 * 15 14 13 35 35 H 1.09004 * 109.46862 * 59.99962 * 16 15 14 36 36 H 1.09000 * 109.47250 * 299.99985 * 16 15 14 37 37 H 1.00901 * 111.00013 * 303.95621 * 17 16 15 38 38 H 1.08997 * 109.47334 * 299.99788 * 18 17 16 39 39 H 1.08995 * 109.47296 * 60.00089 * 18 17 16 40 40 H 1.07997 * 126.44321 * 359.97438 * 20 19 18 41 41 H 1.08999 * 115.54567 * 154.39861 * 23 22 21 42 42 H 1.08997 * 117.49518 * 359.97438 * 24 23 22 43 43 H 1.09002 * 117.49512 * 145.02299 * 24 23 22 44 44 H 1.09003 * 117.49716 * 214.97870 * 25 23 22 45 45 H 1.09004 * 117.50208 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4947 0.0010 14 6 7.4907 -4.7358 0.0017 15 6 7.7564 -6.2425 0.0018 16 6 9.2655 -6.4943 0.0018 17 7 9.5206 -7.9410 0.0026 18 6 10.9626 -8.2213 0.0032 19 6 11.1846 -9.7119 0.0046 20 6 11.3957 -10.4829 -1.0750 21 8 11.5445 -11.7480 -0.6358 22 6 11.4238 -11.7341 0.6984 23 6 11.5227 -12.9368 1.6012 24 6 11.9837 -14.2544 0.9747 25 6 10.5192 -14.0703 1.3803 26 7 11.2131 -10.5090 1.0873 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4317 -0.8896 29 1 3.6439 -3.4313 0.8904 30 1 5.4291 -5.2435 0.0011 31 1 7.9333 -4.2884 0.8916 32 1 7.9340 -4.2891 -0.8883 33 1 7.3139 -6.6895 -0.8885 34 1 7.3131 -6.6896 0.8915 35 1 9.7084 -6.0472 0.8918 36 1 9.7085 -6.0473 -0.8882 37 1 9.0652 -8.3881 0.7842 38 1 11.4176 -7.7866 -0.8867 39 1 11.4169 -7.7859 0.8932 40 1 11.4373 -10.1512 -2.1019 41 1 11.8323 -12.7312 2.6258 42 1 12.2150 -14.2514 -0.0905 43 1 12.5962 -14.9158 1.5874 44 1 10.1689 -14.6108 2.2597 45 1 9.7870 -13.9461 0.5823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:57 Heat of formation + Delta-G solvation = 5.038700 kcal Electronic energy + Delta-G solvation = -24395.159557 eV Core-core repulsion = 20541.221137 eV Total energy + Delta-G solvation = -3853.938420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.81529 -39.29263 -37.88790 -37.39846 -35.59494 -34.56837 -32.43088 -32.13659 -30.51769 -29.07389 -26.48315 -25.59645 -24.79794 -23.85670 -23.09244 -22.00903 -21.76469 -20.75798 -20.34643 -17.88531 -17.77987 -17.11961 -16.61552 -16.42569 -16.29113 -16.08104 -15.64931 -15.38501 -14.98516 -14.84525 -14.75306 -14.53334 -13.82166 -13.52264 -13.28333 -13.10947 -12.79282 -12.72096 -12.60013 -12.24873 -12.11660 -11.97993 -11.91154 -11.75405 -11.27518 -11.25094 -11.23770 -11.14695 -10.99951 -10.98892 -10.59144 -9.84861 -9.51931 -9.19797 -9.01174 -8.95577 -8.88852 -8.49026 -6.90716 -6.28048 -3.99709 0.94624 2.05396 2.20978 2.77595 2.99468 3.09143 3.30000 3.34265 3.36509 3.51555 3.63682 3.89143 4.06619 4.18820 4.23838 4.34185 4.43099 4.49417 4.65904 4.70671 4.81315 4.87722 4.96130 5.02149 5.06020 5.11107 5.12720 5.24147 5.29577 5.33575 5.36094 5.39888 5.41836 5.46375 5.52360 5.76367 5.77106 5.87361 5.92946 6.03104 6.45146 6.56343 6.86149 7.28792 7.62803 7.95089 8.42653 8.50774 9.18248 10.81212 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.001256 C = 0.001226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.138982 B =22295.364343 C =22827.578939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.737 5.737 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.062 3.938 17 N -0.686 5.686 18 C 0.141 3.859 19 C -0.012 4.012 20 C -0.055 4.055 21 O -0.202 6.202 22 C 0.222 3.778 23 C -0.073 4.073 24 C -0.163 4.163 25 C -0.157 4.157 26 N -0.474 5.474 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.347 0.653 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.218 0.782 41 H 0.145 0.855 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.018 -29.779 0.467 39.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.067 4.067 17 N -0.318 5.318 18 C 0.012 3.988 19 C -0.132 4.132 20 C -0.126 4.126 21 O -0.089 6.089 22 C 0.015 3.985 23 C -0.092 4.092 24 C -0.201 4.201 25 C -0.195 4.195 26 N -0.204 5.204 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.165 0.835 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.234 0.766 41 H 0.163 0.837 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 27.024 -27.994 0.389 38.911 hybrid contribution -0.824 -0.538 0.098 0.989 sum 26.200 -28.531 0.487 38.739 Atomic orbital electron populations 1.69946 1.05922 1.27749 1.48122 1.24709 0.94440 0.98951 0.93161 0.86734 0.81903 0.83275 0.79939 1.19202 1.19935 1.15924 1.22325 0.88291 0.97552 1.58752 0.89385 1.84783 1.09259 1.00144 1.97429 1.23282 0.94049 1.04330 1.05830 1.20282 0.90592 0.82303 0.75246 1.90696 1.58805 1.42244 1.47775 1.45945 1.07472 1.08073 1.77660 1.21188 0.81635 0.94920 1.02425 1.21734 0.96051 0.95372 1.03532 1.21863 0.95874 0.87592 1.01419 1.60505 1.09653 1.10957 1.50669 1.20120 0.89596 0.86962 1.02168 1.21586 1.05646 0.97660 0.88302 1.24824 1.06478 0.80189 1.01118 1.84412 1.68922 1.31350 1.24175 1.25047 0.99985 0.94347 0.79107 1.20241 1.08270 0.83338 0.97351 1.23132 0.97790 0.96719 1.02421 1.23159 0.92985 0.99025 1.04349 1.70278 1.18291 1.00476 1.31329 0.91953 0.88467 0.88456 0.76619 0.91687 0.91485 0.90224 0.91281 0.94483 0.90282 0.83516 0.89091 0.93140 0.76580 0.83697 0.87823 0.87155 0.87025 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 11 C 0.53 9.49 7.85 -10.99 -0.09 9.40 16 12 O -0.52 -11.35 15.86 5.56 0.09 -11.27 16 13 N -0.74 -9.33 5.56 -60.30 -0.33 -9.67 16 14 C 0.12 1.32 5.67 -4.04 -0.02 1.29 16 15 C -0.13 -0.98 5.59 -26.74 -0.15 -1.13 16 16 C 0.06 0.44 5.69 -3.82 -0.02 0.42 16 17 N -0.69 -5.10 6.49 -115.06 -0.75 -5.85 16 18 C 0.14 0.99 6.23 -4.97 -0.03 0.96 16 19 C -0.01 -0.10 6.62 -82.81 -0.55 -0.65 16 20 C -0.05 -0.39 12.08 29.35 0.35 -0.03 16 21 O -0.20 -1.66 10.47 5.36 0.06 -1.60 16 22 C 0.22 1.86 7.83 -12.95 -0.10 1.76 16 23 C -0.07 -0.39 6.33 -91.77 -0.58 -0.97 16 24 C -0.16 -0.56 10.17 -26.69 -0.27 -0.83 16 25 C -0.16 -0.59 10.24 -26.69 -0.27 -0.87 16 26 N -0.47 -4.70 11.29 -7.35 -0.08 -4.78 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.40 3.92 8.47 -40.82 -0.35 3.57 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.35 2.75 8.72 -39.29 -0.34 2.41 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.40 7.95 -51.93 -0.41 -0.01 16 43 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -36.28 400.40 -9.24 -45.52 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.02 Total: 0.93 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.29 Total: -4.94 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.39 Total: -46.22 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.14 Total: -12.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.28 -9.24 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.556 kcal (2) G-P(sol) polarization free energy of solvation -36.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds