Wall clock time and date at job start Tue Mar 31 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86798 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00000 * 3 2 1 5 5 H 1.48496 * 109.47561 * 30.00146 * 3 2 1 6 6 H 1.48500 * 109.47212 * 149.99987 * 3 2 1 7 7 C 1.38796 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00086 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99527 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99610 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00404 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00165 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47368 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47473 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47378 * 179.97438 * 16 15 14 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47041 * 179.97438 * 18 17 16 20 20 C 1.34334 * 126.16399 * 95.02443 * 19 18 17 21 21 O 1.34747 * 107.11367 * 180.02562 * 20 19 18 22 22 C 1.33975 * 107.75406 * 359.97438 * 21 20 19 23 23 C 1.50701 * 125.61648 * 180.02562 * 22 21 20 24 24 C 1.53004 * 117.49946 * 8.72703 * 23 22 21 25 25 C 1.52998 * 117.49961 * 300.06462 * 23 22 21 26 26 N 1.30254 * 108.76121 * 359.73319 * 22 21 20 27 27 H 0.97006 * 119.99515 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47116 * 60.00281 * 10 9 7 29 29 H 1.09000 * 109.47216 * 300.00170 * 10 9 7 30 30 H 0.97003 * 120.00304 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.47197 * 59.99913 * 14 13 11 32 32 H 1.09000 * 109.47175 * 300.00155 * 14 13 11 33 33 H 1.09004 * 109.47108 * 59.99956 * 15 14 13 34 34 H 1.09004 * 109.47368 * 300.00056 * 15 14 13 35 35 H 1.09004 * 109.46862 * 59.99962 * 16 15 14 36 36 H 1.09000 * 109.47250 * 299.99985 * 16 15 14 37 37 H 1.00901 * 111.00013 * 303.95621 * 17 16 15 38 38 H 1.08997 * 109.47334 * 299.99788 * 18 17 16 39 39 H 1.08995 * 109.47296 * 60.00089 * 18 17 16 40 40 H 1.07997 * 126.44321 * 359.97438 * 20 19 18 41 41 H 1.08999 * 115.54567 * 154.39861 * 23 22 21 42 42 H 1.08997 * 117.49518 * 359.97438 * 24 23 22 43 43 H 1.09002 * 117.49512 * 145.02299 * 24 23 22 44 44 H 1.09003 * 117.49716 * 214.97870 * 25 23 22 45 45 H 1.09004 * 117.50208 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3440 -2.2963 -0.0003 13 7 6.0457 -4.4947 0.0010 14 6 7.4907 -4.7358 0.0017 15 6 7.7564 -6.2425 0.0018 16 6 9.2655 -6.4943 0.0018 17 7 9.5206 -7.9410 0.0026 18 6 10.9626 -8.2213 0.0032 19 6 11.1846 -9.7119 0.0046 20 6 11.3957 -10.4829 -1.0750 21 8 11.5445 -11.7480 -0.6358 22 6 11.4238 -11.7341 0.6984 23 6 11.5227 -12.9368 1.6012 24 6 11.9837 -14.2544 0.9747 25 6 10.5192 -14.0703 1.3803 26 7 11.2131 -10.5090 1.0873 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4317 -0.8896 29 1 3.6439 -3.4313 0.8904 30 1 5.4291 -5.2435 0.0011 31 1 7.9333 -4.2884 0.8916 32 1 7.9340 -4.2891 -0.8883 33 1 7.3139 -6.6895 -0.8885 34 1 7.3131 -6.6896 0.8915 35 1 9.7084 -6.0472 0.8918 36 1 9.7085 -6.0473 -0.8882 37 1 9.0652 -8.3881 0.7842 38 1 11.4176 -7.7866 -0.8867 39 1 11.4169 -7.7859 0.8932 40 1 11.4373 -10.1512 -2.1019 41 1 11.8323 -12.7312 2.6258 42 1 12.2150 -14.2514 -0.0905 43 1 12.5962 -14.9158 1.5874 44 1 10.1689 -14.6108 2.2597 45 1 9.7870 -13.9461 0.5823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154814179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:56 Heat of formation + Delta-G solvation = -23.604094 kcal Electronic energy + Delta-G solvation = -24396.401602 eV Core-core repulsion = 20541.221137 eV Total energy + Delta-G solvation = -3855.180465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.37808 -40.65104 -38.29153 -37.97087 -36.44106 -35.41186 -34.67129 -33.01749 -31.40292 -30.21017 -27.88125 -27.15166 -25.26240 -24.60717 -23.36069 -22.65815 -22.38539 -21.72663 -21.21497 -19.86574 -18.31856 -17.83288 -17.70156 -17.38434 -17.19201 -17.03222 -16.78049 -16.57346 -16.07013 -15.75784 -15.53122 -15.39945 -15.21308 -14.90970 -14.59477 -14.28422 -13.72136 -13.54446 -13.35124 -13.17030 -13.10670 -12.99425 -12.88069 -12.59264 -12.48936 -12.45255 -12.42454 -11.89554 -11.86328 -11.68548 -11.61463 -11.51512 -11.16950 -11.01564 -10.53796 -10.13487 -9.72701 -9.46377 -8.99672 -8.51571 -6.22518 0.40771 0.99310 1.31675 1.46464 1.48793 1.56536 1.56787 1.72700 2.22425 2.26882 2.70459 2.73060 2.86853 2.95497 3.25696 3.68391 3.74393 3.84982 3.92369 3.96068 4.00188 4.12519 4.18197 4.20134 4.24006 4.47558 4.50511 4.55779 4.59839 4.68013 4.71940 4.74602 4.78386 4.89090 4.95912 5.06164 5.15034 5.16918 5.18021 5.22790 5.43362 5.70743 5.91463 6.11417 6.25915 6.47565 6.71846 6.93741 7.19609 8.60885 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.001256 C = 0.001226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.138982 B =22295.364343 C =22827.578939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.712 5.712 14 C 0.123 3.877 15 C -0.114 4.114 16 C 0.065 3.935 17 N -0.687 5.687 18 C 0.145 3.855 19 C -0.033 4.033 20 C -0.053 4.053 21 O -0.210 6.210 22 C 0.214 3.786 23 C -0.093 4.093 24 C -0.150 4.150 25 C -0.152 4.152 26 N -0.507 5.507 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.417 0.583 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.085 0.915 37 H 0.343 0.657 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.248 0.752 41 H 0.152 0.848 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.419 -31.180 0.188 41.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.050 5.950 10 C -0.263 4.263 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.366 5.366 14 C -0.001 4.001 15 C -0.152 4.152 16 C -0.064 4.064 17 N -0.318 5.318 18 C 0.016 3.984 19 C -0.152 4.152 20 C -0.124 4.124 21 O -0.097 6.097 22 C 0.007 3.993 23 C -0.112 4.112 24 C -0.188 4.188 25 C -0.190 4.190 26 N -0.237 5.237 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.170 0.830 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 28.420 -29.452 0.108 40.928 hybrid contribution -1.224 -0.297 0.176 1.272 sum 27.196 -29.749 0.284 40.307 Atomic orbital electron populations 1.70023 1.07320 1.29026 1.49161 1.25555 0.95248 1.02229 0.92824 0.85869 0.80674 0.79602 0.80246 1.18651 1.18288 1.16105 1.22472 0.90268 0.96728 1.58305 0.91954 1.84707 1.06419 1.06294 1.97594 1.23282 0.95936 0.99564 1.07516 1.19964 0.89401 0.83433 0.75314 1.90686 1.59345 1.43902 1.50357 1.45744 1.08924 1.06770 1.75186 1.21318 0.79839 0.97028 1.01936 1.21594 0.96593 0.92857 1.04153 1.21820 0.95373 0.87505 1.01715 1.60520 1.09939 1.10935 1.50415 1.20149 0.89309 0.86373 1.02616 1.21863 1.06593 0.98306 0.88482 1.25441 1.05160 0.79593 1.02176 1.84423 1.69018 1.31962 1.24274 1.25652 0.99316 0.94873 0.79451 1.20460 1.10184 0.83153 0.97390 1.23216 0.97778 0.95443 1.02334 1.23233 0.92987 0.98035 1.04750 1.70259 1.19583 1.01430 1.32426 0.91361 0.86767 0.86803 0.74593 0.92343 0.91911 0.89694 0.90525 0.94557 0.89708 0.83990 0.87348 0.93952 0.73562 0.83034 0.88415 0.85071 0.85221 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.04 13.97 21.65 0.30 -55.73 16 2 C 0.05 2.76 5.50 84.86 0.47 3.22 16 3 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.53 -31.01 10.04 67.95 0.68 -30.32 16 8 H 0.06 3.84 8.03 -2.92 -0.02 3.81 16 9 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 10 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 11 C 0.53 18.25 7.85 87.66 0.69 18.94 16 12 O -0.56 -24.17 15.86 -3.02 -0.05 -24.22 16 13 N -0.71 -16.35 5.56 -463.07 -2.57 -18.93 16 14 C 0.12 2.38 5.67 86.38 0.49 2.87 16 15 C -0.11 -1.46 5.59 30.59 0.17 -1.28 16 16 C 0.07 0.80 5.69 86.30 0.49 1.29 16 17 N -0.69 -9.17 6.49 -517.93 -3.36 -12.54 16 18 C 0.14 1.88 6.23 85.56 0.53 2.41 16 19 C -0.03 -0.54 6.62 41.26 0.27 -0.27 16 20 C -0.05 -0.69 12.08 66.93 0.81 0.12 16 21 O -0.21 -3.34 10.47 -3.75 -0.04 -3.38 16 22 C 0.21 3.55 7.83 88.34 0.69 4.24 16 23 C -0.09 -0.93 6.33 -11.54 -0.07 -1.00 16 24 C -0.15 -0.82 10.17 30.62 0.31 -0.51 16 25 C -0.15 -0.98 10.24 30.62 0.31 -0.66 16 26 N -0.51 -10.06 11.29 -291.97 -3.30 -13.36 16 27 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 28 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.42 6.88 8.47 -92.71 -0.79 6.10 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.34 5.06 8.72 -89.69 -0.78 4.27 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.25 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 0.67 7.95 -2.39 -0.02 0.65 16 43 H 0.13 0.15 8.14 -2.39 -0.02 0.14 16 44 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 Total: -1.00 -79.07 400.40 -2.47 -81.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.59 Total: 14.31 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.29 Total: -4.73 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -8.93 Total: -100.56 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.09 Total: -27.59 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -79.07 -2.47 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.939 kcal (2) G-P(sol) polarization free energy of solvation -79.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds