Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48508 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47190 * 299.99501 * 3 2 1 6 6 H 1.48497 * 109.47324 * 59.99914 * 3 2 1 7 7 C 1.40029 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 197.08515 * 7 2 1 9 9 C 1.41559 * 119.99766 * 17.09455 * 7 2 1 10 10 C 1.41180 * 120.99200 * 23.46504 * 9 7 2 11 11 C 1.36560 * 119.14289 * 180.25528 * 10 9 7 12 12 N 1.32096 * 121.26723 * 359.76383 * 11 10 9 13 13 C 1.32526 * 122.21608 * 0.02562 * 12 11 10 14 14 N 1.39091 * 119.65576 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00057 * 179.97438 * 14 13 12 16 16 C 1.53000 * 119.54341 * 250.71005 * 15 14 13 17 17 C 1.52999 * 60.55251 * 248.23209 * 16 15 14 18 18 H 1.09006 * 119.54354 * 111.77115 * 17 16 15 19 19 C 1.54394 * 118.90036 * 268.89685 * 17 16 15 20 20 N 1.48145 * 104.61239 * 87.21588 * 19 17 16 21 21 C 1.34775 * 127.83920 * 140.40022 * 20 19 17 22 22 O 1.21693 * 120.00504 * 179.97438 * 21 20 19 23 23 C 1.46662 * 119.99940 * 359.96937 * 21 20 19 24 24 C 1.36542 * 125.99008 * 179.71707 * 23 21 20 25 25 C 1.40362 * 106.70861 * 179.90870 * 24 23 21 26 26 C 1.35132 * 107.11614 * 0.35555 * 25 24 23 27 27 O 1.33940 * 108.76648 * 359.77851 * 26 25 24 28 28 C 1.48143 * 104.32603 * 320.41495 * 20 19 17 29 29 C 1.38736 * 120.69006 * 359.97438 * 13 12 11 30 30 H 0.96994 * 119.99925 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.43456 * 359.97438 * 10 9 7 32 32 H 1.08004 * 119.36865 * 179.74578 * 11 10 9 33 33 H 0.96997 * 119.99855 * 359.97438 * 14 13 12 34 34 H 1.09000 * 117.43674 * 355.88092 * 16 15 14 35 35 H 1.08995 * 117.44461 * 140.57976 * 16 15 14 36 36 H 1.08998 * 110.41022 * 206.00148 * 19 17 16 37 37 H 1.09001 * 110.40719 * 328.43696 * 19 17 16 38 38 H 1.07997 * 126.64374 * 0.04040 * 24 23 21 39 39 H 1.07997 * 126.44524 * 180.15487 * 25 24 23 40 40 H 1.08003 * 125.61958 * 179.78363 * 26 25 24 41 41 H 1.09000 * 110.40907 * 280.80121 * 28 20 19 42 42 H 1.08995 * 110.40943 * 158.37283 * 28 20 19 43 43 H 1.07996 * 120.66906 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0518 -1.2333 0.2753 9 6 1.3466 -2.4117 -0.3593 10 6 0.1897 -2.3894 -1.1681 11 6 -0.4209 -3.5683 -1.4880 12 7 0.0531 -4.7244 -1.0593 13 6 1.1371 -4.8061 -0.3013 14 7 1.5893 -6.0518 0.1209 15 6 2.7872 -6.1510 0.9586 16 6 4.0746 -6.7299 0.3685 17 6 3.3256 -7.5106 1.4503 18 1 2.8355 -8.4497 1.1934 19 6 3.6988 -7.2797 2.9306 20 7 2.8645 -6.1303 3.3515 21 6 2.2323 -5.9547 4.5288 22 8 1.5797 -4.9464 4.7247 23 6 2.3309 -6.9789 5.5739 24 6 1.7481 -6.9251 6.8076 25 6 2.1025 -8.1089 7.4732 26 6 2.8829 -8.8208 6.6304 27 8 3.0183 -8.1366 5.4870 28 6 2.8822 -5.2176 2.1847 29 6 1.8255 -3.6621 0.0756 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2100 -1.4520 -1.5256 32 1 -1.3085 -3.5552 -2.1032 33 1 1.1116 -6.8549 -0.1393 34 1 4.0312 -7.1155 -0.6502 35 1 5.0144 -6.2556 0.6509 36 1 3.4590 -8.1614 3.5250 37 1 4.7570 -7.0349 3.0220 38 1 1.1318 -6.1274 7.1951 39 1 1.8096 -8.3954 8.4725 40 1 3.3247 -9.7830 6.8437 41 1 3.8129 -4.6508 2.1596 42 1 2.0264 -4.5435 2.2164 43 1 2.7086 -3.7290 0.6936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155818153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = 73.070341 kcal Electronic energy + Delta-G solvation = -28760.591967 eV Core-core repulsion = 24774.159669 eV Total energy + Delta-G solvation = -3986.432298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.88583 -40.48034 -38.60658 -37.96780 -34.71716 -33.95061 -33.25584 -32.51048 -30.69929 -30.26374 -28.22348 -27.71042 -26.45980 -25.78679 -22.98368 -22.02124 -21.66087 -21.45728 -20.82117 -19.97951 -19.56833 -17.86606 -17.52880 -16.84837 -16.56095 -15.92978 -15.73172 -15.60587 -15.29344 -14.90704 -14.29254 -13.84268 -13.83570 -13.72787 -13.38617 -13.25164 -12.97111 -12.94868 -12.84607 -12.65926 -12.35191 -11.99814 -11.79930 -11.67944 -11.39823 -11.16178 -10.93570 -10.57332 -10.42287 -10.28617 -10.27294 -10.02878 -9.73260 -9.38013 -9.02973 -8.89646 -8.68751 -7.93275 -7.90695 -6.81452 -6.48237 -4.52748 0.90626 2.14524 2.40620 2.80930 2.90501 3.03979 3.07216 3.12210 3.12406 3.33272 3.50216 3.76937 3.91447 4.34777 4.45010 4.58770 4.68515 4.70525 4.75097 4.88889 5.07017 5.28950 5.36324 5.48411 5.54175 5.59480 5.68639 5.75611 5.80949 5.92954 6.00811 6.04944 6.09776 6.15777 6.22445 6.63516 6.75570 6.90170 6.95891 7.02950 7.28691 7.41524 7.56346 7.83567 7.99538 8.03156 8.07745 8.44206 8.68634 8.85699 8.90971 9.76568 10.13908 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003187 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.848570 B = 8782.239586 C = 9848.377015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.156 3.844 10 C -0.242 4.242 11 C 0.115 3.885 12 N -0.623 5.623 13 C 0.399 3.601 14 N -0.703 5.703 15 C 0.121 3.879 16 C -0.141 4.141 17 C -0.189 4.189 18 H 0.121 0.879 19 C 0.127 3.873 20 N -0.614 5.614 21 C 0.618 3.382 22 O -0.508 6.508 23 C -0.066 4.066 24 C -0.124 4.124 25 C -0.223 4.223 26 C -0.016 4.016 27 O -0.162 6.162 28 C 0.130 3.870 29 C -0.335 4.335 30 H 0.282 0.718 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.394 0.606 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.673 -15.433 9.624 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.147 3.853 10 C -0.267 4.267 11 C -0.034 4.034 12 N -0.346 5.346 13 C 0.169 3.831 14 N -0.338 5.338 15 C 0.029 3.971 16 C -0.181 4.181 17 C -0.209 4.209 18 H 0.139 0.861 19 C 0.005 3.995 20 N -0.347 5.347 21 C 0.406 3.594 22 O -0.384 6.384 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.242 4.242 26 C -0.086 4.086 27 O -0.057 6.057 28 C 0.009 3.991 29 C -0.361 4.361 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.229 0.771 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.225 0.775 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.851 -15.439 9.418 19.716 hybrid contribution 0.386 1.027 0.370 1.158 sum 8.238 -14.412 9.788 19.271 Atomic orbital electron populations 1.69813 1.07717 1.29326 1.33777 1.25971 0.94722 1.01490 0.91912 0.86247 0.81031 0.80772 0.78624 1.18277 1.19617 1.19871 1.19612 0.97901 0.90839 1.40123 0.90186 1.17604 0.89881 0.91659 0.86129 1.21806 1.01393 0.98111 1.05353 1.21339 0.97286 0.87809 0.96970 1.66688 1.16309 1.29949 1.21692 1.17816 0.90225 0.84096 0.90981 1.43175 1.28153 1.05942 1.56527 1.21258 0.87831 0.94596 0.93458 1.23562 0.96157 1.00841 0.97582 1.24033 1.06680 0.96847 0.93328 0.86060 1.22002 0.94907 0.89794 0.92815 1.49143 1.49334 1.22230 1.14036 1.16129 0.79256 0.84480 0.79509 1.90965 1.40967 1.27650 1.78832 1.22097 1.03264 0.88316 0.98117 1.21999 1.00677 0.99314 0.92432 1.21852 1.04064 0.95976 1.02325 1.24430 1.01436 0.98593 0.84097 1.84152 1.57586 1.27503 1.36505 1.22329 1.04975 0.91352 0.80492 1.21305 1.07443 0.92080 1.15321 0.90746 0.85873 0.86413 0.77118 0.87401 0.88183 0.88765 0.90218 0.82156 0.82660 0.77462 0.89421 0.86704 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.27 10.91 55.55 0.61 -19.66 16 2 C 0.08 1.98 5.20 -17.34 -0.09 1.89 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.45 -12.05 9.12 -37.65 -0.34 -12.39 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.16 4.21 5.61 -106.55 -0.60 3.61 16 10 C -0.24 -6.43 8.75 -39.07 -0.34 -6.77 16 11 C 0.11 2.86 11.10 -18.04 -0.20 2.66 16 12 N -0.62 -15.45 10.37 -12.82 -0.13 -15.58 16 13 C 0.40 9.38 7.48 -154.97 -1.16 8.22 16 14 N -0.70 -13.25 5.84 -46.49 -0.27 -13.52 16 15 C 0.12 1.87 2.83 -130.42 -0.37 1.50 16 16 C -0.14 -1.67 10.10 -26.73 -0.27 -1.94 16 17 C -0.19 -2.16 7.10 -89.22 -0.63 -2.79 16 18 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.13 1.41 6.53 -2.41 -0.02 1.40 16 20 N -0.61 -9.29 3.32 -170.85 -0.57 -9.86 16 21 C 0.62 10.36 7.88 -12.86 -0.10 10.26 16 22 O -0.51 -10.56 17.13 5.19 0.09 -10.47 16 23 C -0.07 -0.89 6.97 -36.80 -0.26 -1.14 16 24 C -0.12 -1.47 10.62 -39.40 -0.42 -1.89 16 25 C -0.22 -1.92 10.87 -39.89 -0.43 -2.36 16 26 C -0.02 -0.12 12.08 29.63 0.36 0.24 16 27 O -0.16 -1.72 7.80 4.97 0.04 -1.68 16 28 C 0.13 2.21 4.76 -2.41 -0.01 2.20 16 29 C -0.33 -8.29 7.86 -38.44 -0.30 -8.60 16 30 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 31 H 0.12 3.32 6.17 -52.49 -0.32 2.99 16 32 H 0.12 2.59 8.06 -52.48 -0.42 2.16 16 33 H 0.39 6.90 8.95 -40.82 -0.37 6.53 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.94 5.55 -51.93 -0.29 0.66 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.21 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.09 1.36 7.94 -51.93 -0.41 0.95 16 42 H 0.11 2.47 6.04 -51.93 -0.31 2.16 16 43 H 0.10 2.37 4.91 -52.49 -0.26 2.12 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -32.61 361.69 -9.90 -42.50 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -4.89 Total: 15.17 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -5.19 Total: -5.91 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.36 Total: -58.62 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.13 Total: -12.15 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.61 -9.90 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155818153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.571 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds