Wall clock time and date at job start Tue Mar 31 2020 22:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48508 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47190 * 299.99501 * 3 2 1 6 6 H 1.48497 * 109.47324 * 59.99914 * 3 2 1 7 7 C 1.40029 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 197.08515 * 7 2 1 9 9 C 1.41559 * 119.99766 * 17.09455 * 7 2 1 10 10 C 1.41180 * 120.99200 * 23.46504 * 9 7 2 11 11 C 1.36560 * 119.14289 * 180.25528 * 10 9 7 12 12 N 1.32096 * 121.26723 * 359.76383 * 11 10 9 13 13 C 1.32526 * 122.21608 * 0.02562 * 12 11 10 14 14 N 1.39091 * 119.65576 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00057 * 179.97438 * 14 13 12 16 16 C 1.53000 * 119.54341 * 250.71005 * 15 14 13 17 17 C 1.52999 * 60.55251 * 248.23209 * 16 15 14 18 18 H 1.09006 * 119.54354 * 111.77115 * 17 16 15 19 19 C 1.54394 * 118.90036 * 268.89685 * 17 16 15 20 20 N 1.48145 * 104.61239 * 87.21588 * 19 17 16 21 21 C 1.34775 * 127.83920 * 140.40022 * 20 19 17 22 22 O 1.21693 * 120.00504 * 179.97438 * 21 20 19 23 23 C 1.46662 * 119.99940 * 359.96937 * 21 20 19 24 24 C 1.36542 * 125.99008 * 179.71707 * 23 21 20 25 25 C 1.40362 * 106.70861 * 179.90870 * 24 23 21 26 26 C 1.35132 * 107.11614 * 0.35555 * 25 24 23 27 27 O 1.33940 * 108.76648 * 359.77851 * 26 25 24 28 28 C 1.48143 * 104.32603 * 320.41495 * 20 19 17 29 29 C 1.38736 * 120.69006 * 359.97438 * 13 12 11 30 30 H 0.96994 * 119.99925 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.43456 * 359.97438 * 10 9 7 32 32 H 1.08004 * 119.36865 * 179.74578 * 11 10 9 33 33 H 0.96997 * 119.99855 * 359.97438 * 14 13 12 34 34 H 1.09000 * 117.43674 * 355.88092 * 16 15 14 35 35 H 1.08995 * 117.44461 * 140.57976 * 16 15 14 36 36 H 1.08998 * 110.41022 * 206.00148 * 19 17 16 37 37 H 1.09001 * 110.40719 * 328.43696 * 19 17 16 38 38 H 1.07997 * 126.64374 * 0.04040 * 24 23 21 39 39 H 1.07997 * 126.44524 * 180.15487 * 25 24 23 40 40 H 1.08003 * 125.61958 * 179.78363 * 26 25 24 41 41 H 1.09000 * 110.40907 * 280.80121 * 28 20 19 42 42 H 1.08995 * 110.40943 * 158.37283 * 28 20 19 43 43 H 1.07996 * 120.66906 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0518 -1.2333 0.2753 9 6 1.3466 -2.4117 -0.3593 10 6 0.1897 -2.3894 -1.1681 11 6 -0.4209 -3.5683 -1.4880 12 7 0.0531 -4.7244 -1.0593 13 6 1.1371 -4.8061 -0.3013 14 7 1.5893 -6.0518 0.1209 15 6 2.7872 -6.1510 0.9586 16 6 4.0746 -6.7299 0.3685 17 6 3.3256 -7.5106 1.4503 18 1 2.8355 -8.4497 1.1934 19 6 3.6988 -7.2797 2.9306 20 7 2.8645 -6.1303 3.3515 21 6 2.2323 -5.9547 4.5288 22 8 1.5797 -4.9464 4.7247 23 6 2.3309 -6.9789 5.5739 24 6 1.7481 -6.9251 6.8076 25 6 2.1025 -8.1089 7.4732 26 6 2.8829 -8.8208 6.6304 27 8 3.0183 -8.1366 5.4870 28 6 2.8822 -5.2176 2.1847 29 6 1.8255 -3.6621 0.0756 30 1 -0.4850 0.8400 -0.0004 31 1 -0.2100 -1.4520 -1.5256 32 1 -1.3085 -3.5552 -2.1032 33 1 1.1116 -6.8549 -0.1393 34 1 4.0312 -7.1155 -0.6502 35 1 5.0144 -6.2556 0.6509 36 1 3.4590 -8.1614 3.5250 37 1 4.7570 -7.0349 3.0220 38 1 1.1318 -6.1274 7.1951 39 1 1.8096 -8.3954 8.4725 40 1 3.3247 -9.7830 6.8437 41 1 3.8129 -4.6508 2.1596 42 1 2.0264 -4.5435 2.2164 43 1 2.7086 -3.7290 0.6936 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155818153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:06 Heat of formation + Delta-G solvation = 51.699326 kcal Electronic energy + Delta-G solvation = -28761.518684 eV Core-core repulsion = 24774.159669 eV Total energy + Delta-G solvation = -3987.359015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.68808 -41.68261 -40.22789 -39.47259 -36.35836 -35.53961 -34.17884 -33.89046 -32.61912 -31.21947 -29.71169 -29.19150 -27.83350 -27.45074 -24.09829 -23.28110 -23.18303 -22.71356 -22.06205 -20.98805 -20.94498 -19.36246 -18.94192 -17.89777 -17.66684 -17.47860 -17.11265 -16.74523 -16.63576 -16.38498 -15.94710 -15.62493 -15.07754 -14.95623 -14.70997 -14.49469 -14.38370 -14.24074 -14.00358 -13.88028 -13.62422 -13.33656 -13.15036 -13.08955 -12.89532 -12.71513 -12.64256 -11.97920 -11.90624 -11.74300 -11.67855 -11.26478 -11.18828 -11.08121 -10.41480 -10.11268 -9.92112 -9.87450 -9.63183 -8.71322 -8.23984 -6.55229 -0.02932 0.96027 1.15250 1.37017 1.38461 1.42470 1.52965 1.57956 1.92337 1.99593 2.18052 2.33423 2.45042 2.79521 3.33746 3.44059 3.57507 3.78788 3.86162 3.92463 4.00505 4.09900 4.19153 4.32780 4.35754 4.51494 4.66678 4.69809 4.78461 4.81578 4.89460 4.91220 4.94792 4.98926 5.04863 5.09851 5.13786 5.20758 5.30951 5.40079 5.60525 5.83656 5.89154 6.09799 6.26912 6.36769 6.53183 6.78344 6.85817 6.87987 6.99990 7.84548 8.26565 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003187 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.848570 B = 8782.239586 C = 9848.377015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.036 3.964 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.487 4.487 8 H 0.080 0.920 9 C 0.125 3.875 10 C -0.269 4.269 11 C 0.114 3.886 12 N -0.635 5.635 13 C 0.400 3.600 14 N -0.694 5.694 15 C 0.069 3.931 16 C -0.116 4.116 17 C -0.150 4.150 18 H 0.144 0.856 19 C 0.125 3.875 20 N -0.614 5.614 21 C 0.609 3.391 22 O -0.573 6.573 23 C -0.102 4.102 24 C -0.127 4.127 25 C -0.234 4.234 26 C 0.017 3.983 27 O -0.162 6.162 28 C 0.132 3.868 29 C -0.348 4.348 30 H 0.291 0.709 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.400 0.600 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.185 0.815 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 -18.522 10.621 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.517 4.517 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.294 4.294 11 C -0.036 4.036 12 N -0.359 5.359 13 C 0.168 3.832 14 N -0.328 5.328 15 C -0.021 4.021 16 C -0.156 4.156 17 C -0.170 4.170 18 H 0.161 0.839 19 C 0.005 3.995 20 N -0.346 5.346 21 C 0.400 3.600 22 O -0.454 6.454 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.252 4.252 26 C -0.052 4.052 27 O -0.057 6.057 28 C 0.009 3.991 29 C -0.375 4.375 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.237 0.763 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.167 0.833 39 H 0.202 0.798 40 H 0.279 0.721 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.396 -18.616 10.413 23.729 hybrid contribution -0.388 1.768 0.203 1.822 sum 10.007 -16.848 10.616 22.286 Atomic orbital electron populations 1.69865 1.09293 1.30875 1.33901 1.26908 0.95520 1.04886 0.90744 0.85090 0.79529 0.75617 0.79060 1.17743 1.18374 1.19181 1.19888 0.98189 0.91983 1.41672 0.90199 1.18034 0.90596 0.92936 0.86719 1.21776 1.02365 0.98294 1.06966 1.21723 0.97724 0.87489 0.96650 1.66840 1.16920 1.29658 1.22459 1.18083 0.89443 0.85763 0.89897 1.43168 1.29205 1.04315 1.56076 1.21492 0.88813 0.97640 0.94193 1.23666 0.94673 0.98938 0.98290 1.24229 1.04084 0.95347 0.93334 0.83876 1.22324 0.95588 0.89004 0.92607 1.49244 1.49280 1.22952 1.13103 1.16645 0.78409 0.84604 0.80352 1.90909 1.43825 1.30441 1.80236 1.21405 1.06599 0.89557 0.97749 1.22245 0.99774 1.00368 0.92457 1.22199 1.04544 0.94631 1.03831 1.25528 0.98700 0.98968 0.82015 1.84113 1.57156 1.26521 1.37929 1.22067 1.02767 0.91717 0.82500 1.21438 1.08226 0.92071 1.15771 0.89826 0.87028 0.83896 0.76344 0.86363 0.86227 0.86917 0.87638 0.83262 0.79777 0.72140 0.88686 0.92357 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.01 10.91 21.84 0.24 -43.77 16 2 C 0.04 1.89 5.20 85.29 0.44 2.33 16 3 Si 0.99 38.95 29.59 68.60 2.03 40.98 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.49 -27.21 9.12 23.52 0.21 -27.00 16 8 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 9 C 0.13 7.18 5.61 -21.12 -0.12 7.06 16 10 C -0.27 -15.09 8.75 22.60 0.20 -14.89 16 11 C 0.11 5.85 11.10 84.26 0.94 6.79 16 12 N -0.63 -32.33 10.37 -194.47 -2.02 -34.34 16 13 C 0.40 19.45 7.48 132.90 0.99 20.45 16 14 N -0.69 -26.27 5.84 -301.00 -1.76 -28.03 16 15 C 0.07 2.09 2.83 4.51 0.01 2.11 16 16 C -0.12 -2.38 10.10 30.59 0.31 -2.07 16 17 C -0.15 -2.93 7.10 -9.89 -0.07 -3.00 16 18 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 19 C 0.13 2.43 6.53 86.54 0.56 2.99 16 20 N -0.61 -18.78 3.32 -812.67 -2.69 -21.48 16 21 C 0.61 21.48 7.88 86.44 0.68 22.16 16 22 O -0.57 -26.15 17.13 -4.33 -0.07 -26.22 16 23 C -0.10 -2.70 6.97 24.07 0.17 -2.53 16 24 C -0.13 -2.99 10.62 22.39 0.24 -2.76 16 25 C -0.23 -3.29 10.87 22.07 0.24 -3.05 16 26 C 0.02 0.18 12.08 67.10 0.81 0.99 16 27 O -0.16 -2.93 7.80 -5.14 -0.04 -2.97 16 28 C 0.13 4.68 4.76 86.54 0.41 5.09 16 29 C -0.35 -18.23 7.86 23.01 0.18 -18.05 16 30 H 0.29 14.07 8.29 -92.71 -0.77 13.30 16 31 H 0.11 6.38 6.17 -2.91 -0.02 6.36 16 32 H 0.14 6.41 8.06 -2.91 -0.02 6.39 16 33 H 0.40 13.81 8.95 -92.71 -0.83 12.98 16 34 H 0.12 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.11 1.82 5.55 -2.39 -0.01 1.81 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.26 -0.27 8.06 -2.91 -0.02 -0.30 16 41 H 0.10 3.08 7.94 -2.39 -0.02 3.06 16 42 H 0.06 2.74 6.04 -2.39 -0.01 2.72 16 43 H 0.11 5.49 4.91 -2.91 -0.01 5.48 16 Total: -1.00 -79.61 361.69 2.15 -77.46 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: 0.25 Total: 41.76 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 6.21 Total: -3.38 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.23 Total: -127.62 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.11 Total: -29.19 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -79.61 2.15 -77.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155818153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.159 kcal (2) G-P(sol) polarization free energy of solvation -79.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds