Wall clock time and date at job start Tue Mar 31 2020 23:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34718 * 116.99771 * 2 1 4 4 O 1.21466 * 120.00635 * 359.97438 * 3 2 1 5 5 C 1.47769 * 119.99586 * 180.02562 * 3 2 1 6 6 C 1.39725 * 119.99060 * 180.02562 * 5 3 2 7 7 C 1.37667 * 120.00569 * 180.02562 * 6 5 3 8 8 C 1.39782 * 119.99131 * 359.97438 * 7 6 5 9 9 C 1.47655 * 120.00566 * 179.97438 * 8 7 6 10 10 N 1.37274 * 119.99878 * 0.02562 * 9 8 7 11 11 N 1.31789 * 119.99973 * 179.97438 * 9 8 7 12 12 C 1.34843 * 119.99614 * 175.04345 * 11 9 8 13 13 N 1.33223 * 120.35561 * 84.67900 * 12 11 9 14 14 C 1.31516 * 121.59449 * 179.97438 * 13 12 11 15 15 C 1.50704 * 118.88722 * 179.97438 * 14 13 12 16 16 C 1.38826 * 122.22080 * 0.25375 * 14 13 12 17 17 C 1.36737 * 120.49965 * 359.48121 * 16 14 13 18 18 C 1.41241 * 118.39507 * 0.50135 * 17 16 14 19 19 C 1.40529 * 120.99906 * 179.72697 * 18 17 16 20 20 H 1.07990 * 119.99923 * 207.09851 * 19 18 17 21 21 C 1.40112 * 119.99786 * 27.09810 * 19 18 17 22 22 N 1.30774 * 120.00035 * 13.11378 * 21 19 18 23 23 Si 1.86799 * 119.99895 * 193.11764 * 21 19 18 24 24 H 1.48504 * 109.47085 * 60.00017 * 23 21 19 25 25 H 1.48500 * 109.47157 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.46990 * 299.99860 * 23 21 19 27 27 C 1.39783 * 119.98826 * 0.24887 * 8 7 6 28 28 C 1.37664 * 119.99001 * 359.49416 * 27 8 7 29 29 H 1.08999 * 109.47037 * 60.00210 * 1 2 3 30 30 H 1.09001 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47437 * 300.00437 * 1 2 3 32 32 H 1.07999 * 119.99628 * 359.97438 * 6 5 3 33 33 H 1.08005 * 120.00119 * 179.97438 * 7 6 5 34 34 H 0.96997 * 119.99684 * 186.02715 * 10 9 8 35 35 H 0.96993 * 120.00233 * 6.01794 * 10 9 8 36 36 H 1.08997 * 109.47166 * 89.99659 * 15 14 13 37 37 H 1.09000 * 109.46722 * 329.99760 * 15 14 13 38 38 H 1.08997 * 109.46724 * 210.00109 * 15 14 13 39 39 H 1.08000 * 119.75069 * 179.72214 * 16 14 13 40 40 H 1.07995 * 120.80298 * 180.25089 * 17 16 14 41 41 H 0.97003 * 120.00182 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.00504 * 179.74879 * 27 8 7 43 43 H 1.08001 * 119.99369 * 180.22712 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5392 1.2777 -0.0006 6 6 4.1734 2.5227 0.0000 7 6 5.5481 2.5951 -0.0011 8 6 6.3095 1.4228 -0.0022 9 6 7.7841 1.5001 -0.0039 10 7 8.4073 2.7232 -0.0039 11 7 8.5018 0.3948 -0.0044 12 6 9.8446 0.4630 -0.1069 13 7 10.5936 0.6576 0.9776 14 6 11.9049 0.7276 0.9058 15 6 12.6924 0.9500 2.1713 16 6 12.5877 0.6092 -0.2971 17 6 11.9064 0.4020 -1.4644 18 6 10.4971 0.3230 -1.4146 19 6 9.7421 0.1171 -2.5818 20 1 8.7259 0.4784 -2.6382 21 6 10.3077 -0.5568 -3.6722 22 7 11.4283 -1.2145 -3.5246 23 14 9.4611 -0.5156 -5.3368 24 1 9.3514 0.8905 -5.8017 25 1 10.2561 -1.2996 -6.3160 26 1 8.1033 -1.1045 -5.2162 27 6 5.6748 0.1774 -0.0074 28 6 4.3000 0.1058 -0.0010 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.5850 3.4283 0.0004 33 1 6.0383 3.5575 -0.0011 34 1 9.3717 2.7761 -0.0932 35 1 7.8833 3.5345 0.0853 36 1 12.9441 -0.0125 2.6165 37 1 12.0944 1.5301 2.8741 38 1 13.6082 1.4934 1.9385 39 1 13.6655 0.6774 -0.3105 40 1 12.4329 0.3051 -2.4023 41 1 11.8201 -1.6808 -4.2796 42 1 6.2628 -0.7285 -0.0124 43 1 3.8095 -0.8565 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159857105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:49 Heat of formation + Delta-G solvation = -25.386336 kcal Electronic energy + Delta-G solvation = -27841.406874 eV Core-core repulsion = 23850.705174 eV Total energy + Delta-G solvation = -3990.701700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64584 -40.64006 -39.88274 -37.90612 -37.42710 -36.07885 -34.02112 -32.66686 -32.52220 -32.08167 -30.88519 -29.46609 -28.71927 -26.51005 -25.39513 -23.86146 -23.28397 -22.52660 -22.06556 -20.61687 -19.27087 -19.19627 -18.46404 -18.19345 -17.80527 -17.41293 -17.38490 -16.43621 -16.15336 -15.72550 -15.58564 -15.45694 -14.89674 -14.69701 -14.60099 -14.43019 -14.22609 -14.16153 -13.90540 -13.48982 -13.30397 -13.24754 -13.10083 -12.96788 -12.88200 -12.67115 -12.60841 -12.30388 -12.12823 -11.80800 -11.79820 -11.68927 -11.21489 -11.16511 -10.18949 -10.10538 -10.06189 -9.98005 -9.08023 -8.91924 -8.55067 -6.29483 -0.69257 0.34566 0.70561 1.08182 1.14591 1.34897 1.46412 1.50787 1.66130 1.88802 2.15983 2.66350 2.75221 2.82880 3.36724 3.59770 3.65602 3.82755 3.92838 4.14828 4.25094 4.32083 4.36804 4.39476 4.45633 4.63767 4.66361 4.67528 4.74618 4.93852 4.98356 4.99717 5.05173 5.10240 5.19242 5.23641 5.26982 5.34990 5.38884 5.49051 5.71188 5.81760 5.91859 6.10603 6.12575 6.49430 6.62314 6.74726 6.78683 6.97380 7.64494 7.81129 8.24856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003094 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.134098 B = 9048.926549 C =10792.991464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.515 3.485 4 O -0.530 6.530 5 C -0.126 4.126 6 C -0.053 4.053 7 C -0.099 4.099 8 C -0.020 4.020 9 C 0.439 3.561 10 N -0.860 5.860 11 N -0.538 5.538 12 C 0.177 3.823 13 N -0.496 5.496 14 C -0.019 4.019 15 C -0.067 4.067 16 C -0.157 4.157 17 C -0.160 4.160 18 C 0.038 3.962 19 C -0.450 4.450 20 H 0.072 0.928 21 C 0.033 3.967 22 N -0.819 5.819 23 Si 0.982 3.018 24 H -0.257 1.257 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.088 4.088 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.396 0.604 35 H 0.407 0.593 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.291 0.709 42 H 0.134 0.866 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 5.822 3.194 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.361 3.639 4 O -0.421 6.421 5 C -0.128 4.128 6 C -0.071 4.071 7 C -0.119 4.119 8 C -0.022 4.022 9 C 0.164 3.836 10 N -0.410 5.410 11 N -0.264 5.264 12 C -0.060 4.060 13 N -0.209 5.209 14 C -0.158 4.158 15 C -0.124 4.124 16 C -0.177 4.177 17 C -0.186 4.186 18 C 0.031 3.969 19 C -0.479 4.479 20 H 0.090 0.910 21 C -0.183 4.183 22 N -0.445 5.445 23 Si 0.803 3.197 24 H -0.181 1.181 25 H -0.189 1.189 26 H -0.186 1.186 27 C -0.109 4.109 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.226 0.774 35 H 0.239 0.761 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.152 0.848 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.654 5.026 3.938 16.907 hybrid contribution 0.984 0.475 -1.571 1.914 sum -14.670 5.502 2.368 15.846 Atomic orbital electron populations 1.23611 0.74085 1.05927 1.02795 1.86555 1.25416 1.31662 1.83672 1.21266 0.89146 0.81579 0.71900 1.90810 1.67268 1.36762 1.47274 1.19345 0.88959 0.95537 1.08990 1.21261 0.93892 0.97163 0.94746 1.21325 0.93200 0.97907 0.99459 1.18712 0.87881 0.95425 1.00226 1.21155 0.91817 0.82411 0.88219 1.43043 1.10779 1.06519 1.80691 1.68534 1.04197 1.24377 1.29305 1.20529 0.89234 1.08109 0.88143 1.67365 1.07535 1.14307 1.31738 1.20780 0.89556 1.09814 0.95610 1.20324 0.98108 1.01113 0.92871 1.21311 0.99817 1.03132 0.93469 1.21272 0.94260 1.05290 0.97776 1.19718 0.92939 0.92280 0.91932 1.19362 0.99732 1.31286 0.97531 0.91016 1.26820 0.95199 0.92059 1.04182 1.69809 1.18166 1.22310 1.34199 0.85241 0.79060 0.79774 0.75674 1.18136 1.18912 1.18564 1.21385 0.94502 0.97750 0.97220 1.21512 0.92537 0.98931 0.94456 0.91699 0.84945 0.91580 0.82420 0.82074 0.77429 0.76087 0.92514 0.92348 0.90341 0.86244 0.86926 0.89825 0.84835 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.90 9.80 -56.27 -0.55 -7.45 16 3 C 0.51 11.73 7.90 70.34 0.56 12.29 16 4 O -0.53 -13.99 16.12 19.95 0.32 -13.67 16 5 C -0.13 -2.83 5.88 -20.04 -0.12 -2.95 16 6 C -0.05 -1.07 9.58 22.49 0.22 -0.86 16 7 C -0.10 -2.12 9.53 22.51 0.21 -1.91 16 8 C -0.02 -0.59 5.88 -20.04 -0.12 -0.70 16 9 C 0.44 16.21 7.73 136.10 1.05 17.26 16 10 N -0.86 -27.19 8.79 -50.97 -0.45 -27.64 16 11 N -0.54 -25.12 8.98 -181.01 -1.62 -26.75 16 12 C 0.18 9.12 5.43 136.21 0.74 9.86 16 13 N -0.50 -24.81 10.28 -177.06 -1.82 -26.63 16 14 C -0.02 -0.88 6.77 42.75 0.29 -0.59 16 15 C -0.07 -2.35 10.13 71.24 0.72 -1.62 16 16 C -0.16 -7.36 9.57 22.06 0.21 -7.15 16 17 C -0.16 -8.45 8.74 22.66 0.20 -8.25 16 18 C 0.04 2.09 5.73 -19.74 -0.11 1.97 16 19 C -0.45 -24.09 8.77 23.28 0.20 -23.88 16 20 H 0.07 3.80 7.74 -2.92 -0.02 3.78 16 21 C 0.03 1.65 5.25 85.31 0.45 2.10 16 22 N -0.82 -42.48 10.91 21.86 0.24 -42.24 16 23 Si 0.98 37.86 29.58 68.60 2.03 39.89 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 26 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 27 C -0.09 -2.54 9.57 22.51 0.22 -2.32 16 28 C -0.06 -1.30 9.60 22.49 0.22 -1.08 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.16 2.68 7.64 -2.91 -0.02 2.66 16 33 H 0.16 2.44 6.41 -2.91 -0.02 2.42 16 34 H 0.40 14.61 7.45 -92.71 -0.69 13.92 16 35 H 0.41 8.95 6.93 -92.71 -0.64 8.31 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.31 8.06 -2.39 -0.02 2.30 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.11 6.10 6.31 -2.91 -0.02 6.09 16 41 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 42 H 0.13 4.36 7.54 -2.91 -0.02 4.34 16 43 H 0.16 3.01 7.60 -2.91 -0.02 2.99 16 Total: -1.00 -71.06 375.10 4.03 -67.03 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.25 Total: 43.73 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 6.13 Total: -6.28 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -3.65 Total: -123.26 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.23 Total: -21.12 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -71.06 4.03 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159857105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.642 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds