Wall clock time and date at job start Tue Mar 31 2020 23:01:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34720 * 117.00001 * 2 1
4 4 O 1.21469 * 120.00123 * 0.02562 * 3 2 1
5 5 C 1.47765 * 119.99932 * 179.97438 * 3 2 1
6 6 C 1.39723 * 119.99353 * 180.02562 * 5 3 2
7 7 C 1.37665 * 120.00322 * 180.02562 * 6 5 3
8 8 C 1.39766 * 119.99608 * 0.02562 * 7 6 5
9 9 C 1.47680 * 120.00393 * 179.97438 * 8 7 6
10 10 N 1.37313 * 120.00154 * 0.02562 * 9 8 7
11 11 N 1.31699 * 119.99651 * 180.02562 * 9 8 7
12 12 C 1.35091 * 119.99750 * 184.95623 * 11 9 8
13 13 C 1.40565 * 119.49812 * 267.75545 * 12 11 9
14 14 C 1.36260 * 119.43581 * 179.97438 * 13 12 11
15 15 C 1.41506 * 118.47023 * 359.97438 * 14 13 12
16 16 C 1.40795 * 120.50722 * 180.27108 * 15 14 13
17 17 H 1.08000 * 119.99895 * 149.34460 * 16 15 14
18 18 C 1.40017 * 120.00124 * 329.35285 * 16 15 14
19 19 N 1.30811 * 119.99896 * 162.35308 * 18 16 15
20 20 Si 1.86796 * 119.99762 * 342.35080 * 18 16 15
21 21 H 1.48499 * 109.47010 * 95.37509 * 20 18 16
22 22 H 1.48501 * 109.46938 * 215.37461 * 20 18 16
23 23 H 1.48503 * 109.47356 * 335.37358 * 20 18 16
24 24 C 1.41062 * 118.98430 * 0.02562 * 15 14 13
25 25 C 1.50704 * 119.77431 * 179.97438 * 24 15 14
26 26 N 1.31164 * 120.44474 * 359.97438 * 24 15 14
27 27 C 1.39772 * 119.99265 * 0.25325 * 8 7 6
28 28 C 1.37671 * 119.98616 * 359.49068 * 27 8 7
29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47014 * 299.99545 * 1 2 3
31 31 H 1.08998 * 109.47353 * 59.99398 * 1 2 3
32 32 H 1.08004 * 119.99670 * 0.02562 * 6 5 3
33 33 H 1.08000 * 120.00178 * 179.97438 * 7 6 5
34 34 H 0.97002 * 119.99525 * 175.33367 * 10 9 8
35 35 H 0.96992 * 119.99856 * 355.33104 * 10 9 8
36 36 H 1.07995 * 120.28036 * 359.97438 * 13 12 11
37 37 H 1.07997 * 120.76109 * 179.97438 * 14 13 12
38 38 H 0.97002 * 120.00046 * 179.97438 * 19 18 16
39 39 H 1.09003 * 109.46924 * 90.00285 * 25 24 15
40 40 H 1.08998 * 109.46688 * 209.99536 * 25 24 15
41 41 H 1.09000 * 109.47089 * 330.00177 * 25 24 15
42 42 H 1.07993 * 120.01165 * 179.72305 * 27 8 7
43 43 H 1.08007 * 119.99608 * 180.25393 * 28 27 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0636 1.2004 0.0000
4 8 1.4020 2.2191 0.0005
5 6 3.5392 1.2777 0.0006
6 6 4.1734 2.5227 0.0011
7 6 5.5482 2.5949 0.0011
8 6 6.3095 1.4228 0.0000
9 6 7.7843 1.5002 -0.0005
10 7 8.4077 2.7236 0.0005
11 7 8.5015 0.3956 -0.0021
12 6 9.8469 0.4638 0.0985
13 6 10.6269 0.5098 -1.0700
14 6 11.9838 0.5791 -0.9671
15 6 12.5621 0.6030 0.3242
16 6 13.9592 0.6799 0.4804
17 1 14.3797 1.1753 1.3430
18 6 14.8035 0.1141 -0.4827
19 7 16.0620 0.4670 -0.5376
20 14 14.1329 -1.1445 -1.6891
21 1 13.7477 -0.4639 -2.9514
22 1 15.1763 -2.1622 -1.9737
23 1 12.9416 -1.8081 -1.1010
24 6 11.7170 0.5538 1.4526
25 6 12.3138 0.5776 2.8362
26 7 10.4153 0.4875 1.3056
27 6 5.6749 0.1775 -0.0064
28 6 4.3001 0.1058 -0.0011
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 3.5850 3.4284 0.0015
33 1 6.0384 3.5573 0.0011
34 1 9.3739 2.7755 0.0685
35 1 7.8819 3.5359 -0.0667
36 1 10.1547 0.4904 -2.0411
37 1 12.6037 0.6151 -1.8508
38 1 16.6470 0.0748 -1.2046
39 1 12.4048 1.6096 3.1749
40 1 11.6681 0.0265 3.5198
41 1 13.3001 0.1140 2.8144
42 1 6.2629 -0.7283 -0.0118
43 1 3.8096 -0.8565 -0.0019
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001159857446.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:01:54
Heat of formation + Delta-G solvation = -5.189133 kcal
Electronic energy + Delta-G solvation = -27298.082077 eV
Core-core repulsion = 23308.256194 eV
Total energy + Delta-G solvation = -3989.825884 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.85147 -39.58154 -38.84961 -36.94857 -36.56740 -34.07402 -32.69917 -31.70405
-31.59949 -31.23820 -29.97710 -28.14429 -27.18770 -25.70625 -24.05949 -22.78463
-22.14303 -21.38473 -20.70370 -19.54788 -18.46040 -17.65412 -17.52478 -17.13870
-16.78254 -16.66669 -15.62440 -15.28973 -15.15742 -14.77911 -14.66989 -13.89111
-13.82665 -13.62553 -13.54750 -13.46432 -13.26153 -12.89813 -12.82333 -12.48525
-12.25990 -12.06193 -11.88904 -11.65287 -11.50567 -11.33505 -11.23803 -11.15491
-10.86392 -10.85528 -10.39525 -10.01007 -9.80274 -9.38394 -9.29479 -9.21431
-8.55235 -8.50359 -7.72047 -7.35231 -7.11900 -4.56459 0.17373 1.12722
2.02248 2.26942 2.34224 2.58927 2.87274 2.99050 3.10089 3.21961
3.68792 3.77241 3.84914 4.32758 4.36963 4.50419 4.56921 4.72744
4.75244 4.82920 5.05041 5.12711 5.19668 5.25090 5.43261 5.50943
5.75955 5.83783 5.93464 6.00636 6.04680 6.11543 6.19680 6.31974
6.45790 6.53142 6.54439 6.68654 6.72045 6.87461 7.09439 7.26215
7.36545 7.40096 7.55344 7.63616 7.92901 8.13996 8.34849 8.57606
8.86899 9.39866 9.88029
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026672 B = 0.002079 C = 0.002038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.547644 B =13463.880594 C =13738.507856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.354 6.354
3 C 0.511 3.489
4 O -0.508 6.508
5 C -0.124 4.124
6 C -0.057 4.057
7 C -0.114 4.114
8 C 0.001 3.999
9 C 0.430 3.570
10 N -0.871 5.871
11 N -0.510 5.510
12 C 0.155 3.845
13 C -0.130 4.130
14 C -0.198 4.198
15 C 0.040 3.960
16 C -0.426 4.426
17 H 0.098 0.902
18 C 0.084 3.916
19 N -0.796 5.796
20 Si 0.908 3.092
21 H -0.269 1.269
22 H -0.287 1.287
23 H -0.245 1.245
24 C 0.036 3.964
25 C -0.073 4.073
26 N -0.462 5.462
27 C -0.079 4.079
28 C -0.065 4.065
29 H 0.103 0.897
30 H 0.064 0.936
31 H 0.063 0.937
32 H 0.141 0.859
33 H 0.135 0.865
34 H 0.408 0.592
35 H 0.389 0.611
36 H 0.101 0.899
37 H 0.109 0.891
38 H 0.288 0.712
39 H 0.051 0.949
40 H 0.051 0.949
41 H 0.072 0.928
42 H 0.153 0.847
43 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.891 1.819 -1.028 21.991
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.270 6.270
3 C 0.356 3.644
4 O -0.397 6.397
5 C -0.126 4.126
6 C -0.075 4.075
7 C -0.134 4.134
8 C -0.002 4.002
9 C 0.154 3.846
10 N -0.423 5.423
11 N -0.235 5.235
12 C -0.074 4.074
13 C -0.152 4.152
14 C -0.223 4.223
15 C 0.035 3.965
16 C -0.454 4.454
17 H 0.116 0.884
18 C -0.137 4.137
19 N -0.419 5.419
20 Si 0.734 3.266
21 H -0.195 1.195
22 H -0.214 1.214
23 H -0.168 1.168
24 C -0.111 4.111
25 C -0.131 4.131
26 N -0.174 5.174
27 C -0.099 4.099
28 C -0.083 4.083
29 H 0.121 0.879
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.158 0.842
33 H 0.152 0.848
34 H 0.239 0.761
35 H 0.217 0.783
36 H 0.119 0.881
37 H 0.126 0.874
38 H 0.099 0.901
39 H 0.070 0.930
40 H 0.070 0.930
41 H 0.090 0.910
42 H 0.170 0.830
43 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -22.418 1.048 -0.433 22.447
hybrid contribution 0.899 0.604 -1.464 1.821
sum -21.518 1.652 -1.897 21.665
Atomic orbital electron populations
1.23298 0.75857 1.03889 1.02658 1.86557 1.23643 1.32588 1.84236
1.21277 0.89192 0.81427 0.72502 1.90830 1.66852 1.36050 1.45996
1.19185 0.88798 0.95198 1.09432 1.21063 0.94063 0.96768 0.95578
1.21133 0.93230 0.97956 1.01103 1.18673 0.89439 0.94029 0.98040
1.20862 0.90697 0.82794 0.90256 1.43204 1.11069 1.06166 1.81820
1.68896 1.05600 1.22861 1.26165 1.18336 0.88389 1.11980 0.88664
1.21249 0.94362 1.02549 0.97064 1.21004 0.93973 1.10169 0.97178
1.18443 0.94718 0.92027 0.91301 1.19370 0.88999 1.30046 1.07019
0.88380 1.26218 0.94555 0.96430 0.96496 1.69671 1.06155 1.35177
1.30937 0.86337 0.79739 0.80351 0.80149 1.19543 1.21368 1.16784
1.20951 0.87889 1.07192 0.95026 1.20304 1.00180 1.00642 0.91973
1.67167 1.13512 1.11714 1.24968 1.21444 0.93673 0.98274 0.96542
1.21463 0.93608 0.98000 0.95225 0.87854 0.91764 0.91785 0.84161
0.84762 0.76071 0.78283 0.88114 0.87361 0.90139 0.93021 0.93017
0.90951 0.82968 0.83940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.23 10.56 101.05 1.07 1.29 16
2 O -0.35 -3.28 9.80 -40.55 -0.40 -3.67 16
3 C 0.51 5.55 7.90 34.63 0.27 5.82 16
4 O -0.51 -6.53 16.12 -19.24 -0.31 -6.84 16
5 C -0.12 -1.29 5.88 -104.89 -0.62 -1.90 16
6 C -0.06 -0.55 9.58 -39.24 -0.38 -0.92 16
7 C -0.11 -1.11 9.54 -39.22 -0.37 -1.49 16
8 C 0.00 0.01 5.88 -104.90 -0.62 -0.61 16
9 C 0.43 6.69 7.73 -153.72 -1.19 5.50 16
10 N -0.87 -11.88 8.80 32.54 0.29 -11.59 16
11 N -0.51 -9.93 9.50 -10.16 -0.10 -10.03 16
12 C 0.16 3.45 5.19 -157.25 -0.82 2.64 16
13 C -0.13 -2.89 9.95 -39.42 -0.39 -3.28 16
14 C -0.20 -4.68 7.21 -39.05 -0.28 -4.96 16
15 C 0.04 1.00 5.09 -106.62 -0.54 0.45 16
16 C -0.43 -10.82 8.51 -37.95 -0.32 -11.14 16
17 H 0.10 2.56 7.25 -52.49 -0.38 2.18 16
18 C 0.08 2.09 5.42 -17.32 -0.09 1.99 16
19 N -0.80 -20.07 13.93 55.55 0.77 -19.30 16
20 Si 0.91 20.22 24.53 -169.99 -4.17 16.05 16
21 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16
22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16
23 H -0.24 -5.78 6.86 56.52 0.39 -5.39 16
24 C 0.04 0.84 6.86 -81.81 -0.56 0.28 16
25 C -0.07 -1.49 9.58 36.01 0.34 -1.15 16
26 N -0.46 -10.87 10.32 -8.43 -0.09 -10.95 16
27 C -0.08 -0.93 9.57 -39.22 -0.38 -1.31 16
28 C -0.06 -0.64 9.60 -39.23 -0.38 -1.02 16
29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.14 1.20 7.64 -52.48 -0.40 0.80 16
33 H 0.13 0.97 6.40 -52.49 -0.34 0.64 16
34 H 0.41 6.52 7.45 -40.82 -0.30 6.22 16
35 H 0.39 3.78 6.92 -40.82 -0.28 3.50 16
36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16
37 H 0.11 2.52 4.85 -52.49 -0.25 2.26 16
38 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16
39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
41 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16
42 H 0.15 1.90 7.54 -52.49 -0.40 1.51 16
43 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16
LS Contribution 367.25 15.07 5.53 5.53
Total: -1.00 -30.81 367.25 -8.53 -39.34
By element:
Atomic # 1 Polarization: 16.06 SS G_CDS: -4.82 Total: 11.25 kcal
Atomic # 6 Polarization: -4.55 SS G_CDS: -5.25 Total: -9.80 kcal
Atomic # 7 Polarization: -52.74 SS G_CDS: 0.88 Total: -51.87 kcal
Atomic # 8 Polarization: -9.80 SS G_CDS: -0.71 Total: -10.51 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -4.17 Total: 16.05 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -30.81 -8.53 -39.34 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001159857446.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.153 kcal
(2) G-P(sol) polarization free energy of solvation -30.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds