Wall clock time and date at job start Tue Mar 31 2020 23:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34720 * 117.00001 * 2 1 4 4 O 1.21469 * 120.00123 * 0.02562 * 3 2 1 5 5 C 1.47765 * 119.99932 * 179.97438 * 3 2 1 6 6 C 1.39723 * 119.99353 * 180.02562 * 5 3 2 7 7 C 1.37665 * 120.00322 * 180.02562 * 6 5 3 8 8 C 1.39766 * 119.99608 * 0.02562 * 7 6 5 9 9 C 1.47680 * 120.00393 * 179.97438 * 8 7 6 10 10 N 1.37313 * 120.00154 * 0.02562 * 9 8 7 11 11 N 1.31699 * 119.99651 * 180.02562 * 9 8 7 12 12 C 1.35091 * 119.99750 * 184.95623 * 11 9 8 13 13 C 1.40565 * 119.49812 * 267.75545 * 12 11 9 14 14 C 1.36260 * 119.43581 * 179.97438 * 13 12 11 15 15 C 1.41506 * 118.47023 * 359.97438 * 14 13 12 16 16 C 1.40795 * 120.50722 * 180.27108 * 15 14 13 17 17 H 1.08000 * 119.99895 * 149.34460 * 16 15 14 18 18 C 1.40017 * 120.00124 * 329.35285 * 16 15 14 19 19 N 1.30811 * 119.99896 * 162.35308 * 18 16 15 20 20 Si 1.86796 * 119.99762 * 342.35080 * 18 16 15 21 21 H 1.48499 * 109.47010 * 95.37509 * 20 18 16 22 22 H 1.48501 * 109.46938 * 215.37461 * 20 18 16 23 23 H 1.48503 * 109.47356 * 335.37358 * 20 18 16 24 24 C 1.41062 * 118.98430 * 0.02562 * 15 14 13 25 25 C 1.50704 * 119.77431 * 179.97438 * 24 15 14 26 26 N 1.31164 * 120.44474 * 359.97438 * 24 15 14 27 27 C 1.39772 * 119.99265 * 0.25325 * 8 7 6 28 28 C 1.37671 * 119.98616 * 359.49068 * 27 8 7 29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47014 * 299.99545 * 1 2 3 31 31 H 1.08998 * 109.47353 * 59.99398 * 1 2 3 32 32 H 1.08004 * 119.99670 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.00178 * 179.97438 * 7 6 5 34 34 H 0.97002 * 119.99525 * 175.33367 * 10 9 8 35 35 H 0.96992 * 119.99856 * 355.33104 * 10 9 8 36 36 H 1.07995 * 120.28036 * 359.97438 * 13 12 11 37 37 H 1.07997 * 120.76109 * 179.97438 * 14 13 12 38 38 H 0.97002 * 120.00046 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46924 * 90.00285 * 25 24 15 40 40 H 1.08998 * 109.46688 * 209.99536 * 25 24 15 41 41 H 1.09000 * 109.47089 * 330.00177 * 25 24 15 42 42 H 1.07993 * 120.01165 * 179.72305 * 27 8 7 43 43 H 1.08007 * 119.99608 * 180.25393 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5392 1.2777 0.0006 6 6 4.1734 2.5227 0.0011 7 6 5.5482 2.5949 0.0011 8 6 6.3095 1.4228 0.0000 9 6 7.7843 1.5002 -0.0005 10 7 8.4077 2.7236 0.0005 11 7 8.5015 0.3956 -0.0021 12 6 9.8469 0.4638 0.0985 13 6 10.6269 0.5098 -1.0700 14 6 11.9838 0.5791 -0.9671 15 6 12.5621 0.6030 0.3242 16 6 13.9592 0.6799 0.4804 17 1 14.3797 1.1753 1.3430 18 6 14.8035 0.1141 -0.4827 19 7 16.0620 0.4670 -0.5376 20 14 14.1329 -1.1445 -1.6891 21 1 13.7477 -0.4639 -2.9514 22 1 15.1763 -2.1622 -1.9737 23 1 12.9416 -1.8081 -1.1010 24 6 11.7170 0.5538 1.4526 25 6 12.3138 0.5776 2.8362 26 7 10.4153 0.4875 1.3056 27 6 5.6749 0.1775 -0.0064 28 6 4.3001 0.1058 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.5850 3.4284 0.0015 33 1 6.0384 3.5573 0.0011 34 1 9.3739 2.7755 0.0685 35 1 7.8819 3.5359 -0.0667 36 1 10.1547 0.4904 -2.0411 37 1 12.6037 0.6151 -1.8508 38 1 16.6470 0.0748 -1.2046 39 1 12.4048 1.6096 3.1749 40 1 11.6681 0.0265 3.5198 41 1 13.3001 0.1140 2.8144 42 1 6.2629 -0.7283 -0.0118 43 1 3.8096 -0.8565 -0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159857446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:54 Heat of formation + Delta-G solvation = -5.189133 kcal Electronic energy + Delta-G solvation = -27298.082077 eV Core-core repulsion = 23308.256194 eV Total energy + Delta-G solvation = -3989.825884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85147 -39.58154 -38.84961 -36.94857 -36.56740 -34.07402 -32.69917 -31.70405 -31.59949 -31.23820 -29.97710 -28.14429 -27.18770 -25.70625 -24.05949 -22.78463 -22.14303 -21.38473 -20.70370 -19.54788 -18.46040 -17.65412 -17.52478 -17.13870 -16.78254 -16.66669 -15.62440 -15.28973 -15.15742 -14.77911 -14.66989 -13.89111 -13.82665 -13.62553 -13.54750 -13.46432 -13.26153 -12.89813 -12.82333 -12.48525 -12.25990 -12.06193 -11.88904 -11.65287 -11.50567 -11.33505 -11.23803 -11.15491 -10.86392 -10.85528 -10.39525 -10.01007 -9.80274 -9.38394 -9.29479 -9.21431 -8.55235 -8.50359 -7.72047 -7.35231 -7.11900 -4.56459 0.17373 1.12722 2.02248 2.26942 2.34224 2.58927 2.87274 2.99050 3.10089 3.21961 3.68792 3.77241 3.84914 4.32758 4.36963 4.50419 4.56921 4.72744 4.75244 4.82920 5.05041 5.12711 5.19668 5.25090 5.43261 5.50943 5.75955 5.83783 5.93464 6.00636 6.04680 6.11543 6.19680 6.31974 6.45790 6.53142 6.54439 6.68654 6.72045 6.87461 7.09439 7.26215 7.36545 7.40096 7.55344 7.63616 7.92901 8.13996 8.34849 8.57606 8.86899 9.39866 9.88029 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.002079 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.547644 B =13463.880594 C =13738.507856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.124 4.124 6 C -0.057 4.057 7 C -0.114 4.114 8 C 0.001 3.999 9 C 0.430 3.570 10 N -0.871 5.871 11 N -0.510 5.510 12 C 0.155 3.845 13 C -0.130 4.130 14 C -0.198 4.198 15 C 0.040 3.960 16 C -0.426 4.426 17 H 0.098 0.902 18 C 0.084 3.916 19 N -0.796 5.796 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.245 1.245 24 C 0.036 3.964 25 C -0.073 4.073 26 N -0.462 5.462 27 C -0.079 4.079 28 C -0.065 4.065 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.408 0.592 35 H 0.389 0.611 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.288 0.712 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.891 1.819 -1.028 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.356 3.644 4 O -0.397 6.397 5 C -0.126 4.126 6 C -0.075 4.075 7 C -0.134 4.134 8 C -0.002 4.002 9 C 0.154 3.846 10 N -0.423 5.423 11 N -0.235 5.235 12 C -0.074 4.074 13 C -0.152 4.152 14 C -0.223 4.223 15 C 0.035 3.965 16 C -0.454 4.454 17 H 0.116 0.884 18 C -0.137 4.137 19 N -0.419 5.419 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.168 1.168 24 C -0.111 4.111 25 C -0.131 4.131 26 N -0.174 5.174 27 C -0.099 4.099 28 C -0.083 4.083 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.239 0.761 35 H 0.217 0.783 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.170 0.830 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.418 1.048 -0.433 22.447 hybrid contribution 0.899 0.604 -1.464 1.821 sum -21.518 1.652 -1.897 21.665 Atomic orbital electron populations 1.23298 0.75857 1.03889 1.02658 1.86557 1.23643 1.32588 1.84236 1.21277 0.89192 0.81427 0.72502 1.90830 1.66852 1.36050 1.45996 1.19185 0.88798 0.95198 1.09432 1.21063 0.94063 0.96768 0.95578 1.21133 0.93230 0.97956 1.01103 1.18673 0.89439 0.94029 0.98040 1.20862 0.90697 0.82794 0.90256 1.43204 1.11069 1.06166 1.81820 1.68896 1.05600 1.22861 1.26165 1.18336 0.88389 1.11980 0.88664 1.21249 0.94362 1.02549 0.97064 1.21004 0.93973 1.10169 0.97178 1.18443 0.94718 0.92027 0.91301 1.19370 0.88999 1.30046 1.07019 0.88380 1.26218 0.94555 0.96430 0.96496 1.69671 1.06155 1.35177 1.30937 0.86337 0.79739 0.80351 0.80149 1.19543 1.21368 1.16784 1.20951 0.87889 1.07192 0.95026 1.20304 1.00180 1.00642 0.91973 1.67167 1.13512 1.11714 1.24968 1.21444 0.93673 0.98274 0.96542 1.21463 0.93608 0.98000 0.95225 0.87854 0.91764 0.91785 0.84161 0.84762 0.76071 0.78283 0.88114 0.87361 0.90139 0.93021 0.93017 0.90951 0.82968 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.28 9.80 -40.55 -0.40 -3.67 16 3 C 0.51 5.55 7.90 34.63 0.27 5.82 16 4 O -0.51 -6.53 16.12 -19.24 -0.31 -6.84 16 5 C -0.12 -1.29 5.88 -104.89 -0.62 -1.90 16 6 C -0.06 -0.55 9.58 -39.24 -0.38 -0.92 16 7 C -0.11 -1.11 9.54 -39.22 -0.37 -1.49 16 8 C 0.00 0.01 5.88 -104.90 -0.62 -0.61 16 9 C 0.43 6.69 7.73 -153.72 -1.19 5.50 16 10 N -0.87 -11.88 8.80 32.54 0.29 -11.59 16 11 N -0.51 -9.93 9.50 -10.16 -0.10 -10.03 16 12 C 0.16 3.45 5.19 -157.25 -0.82 2.64 16 13 C -0.13 -2.89 9.95 -39.42 -0.39 -3.28 16 14 C -0.20 -4.68 7.21 -39.05 -0.28 -4.96 16 15 C 0.04 1.00 5.09 -106.62 -0.54 0.45 16 16 C -0.43 -10.82 8.51 -37.95 -0.32 -11.14 16 17 H 0.10 2.56 7.25 -52.49 -0.38 2.18 16 18 C 0.08 2.09 5.42 -17.32 -0.09 1.99 16 19 N -0.80 -20.07 13.93 55.55 0.77 -19.30 16 20 Si 0.91 20.22 24.53 -169.99 -4.17 16.05 16 21 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16 22 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.24 -5.78 6.86 56.52 0.39 -5.39 16 24 C 0.04 0.84 6.86 -81.81 -0.56 0.28 16 25 C -0.07 -1.49 9.58 36.01 0.34 -1.15 16 26 N -0.46 -10.87 10.32 -8.43 -0.09 -10.95 16 27 C -0.08 -0.93 9.57 -39.22 -0.38 -1.31 16 28 C -0.06 -0.64 9.60 -39.23 -0.38 -1.02 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.14 1.20 7.64 -52.48 -0.40 0.80 16 33 H 0.13 0.97 6.40 -52.49 -0.34 0.64 16 34 H 0.41 6.52 7.45 -40.82 -0.30 6.22 16 35 H 0.39 3.78 6.92 -40.82 -0.28 3.50 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.11 2.52 4.85 -52.49 -0.25 2.26 16 38 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16 42 H 0.15 1.90 7.54 -52.49 -0.40 1.51 16 43 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -30.81 367.25 -8.53 -39.34 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.82 Total: 11.25 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -5.25 Total: -9.80 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.88 Total: -51.87 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.71 Total: -10.51 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.17 Total: 16.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.81 -8.53 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159857446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.153 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds