Wall clock time and date at job start Tue Mar 31 2020 23:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34720 * 117.00001 * 2 1 4 4 O 1.21469 * 120.00123 * 0.02562 * 3 2 1 5 5 C 1.47765 * 119.99932 * 179.97438 * 3 2 1 6 6 C 1.39723 * 119.99353 * 180.02562 * 5 3 2 7 7 C 1.37665 * 120.00322 * 180.02562 * 6 5 3 8 8 C 1.39766 * 119.99608 * 0.02562 * 7 6 5 9 9 C 1.47680 * 120.00393 * 179.97438 * 8 7 6 10 10 N 1.37313 * 120.00154 * 0.02562 * 9 8 7 11 11 N 1.31699 * 119.99651 * 180.02562 * 9 8 7 12 12 C 1.35091 * 119.99750 * 184.95623 * 11 9 8 13 13 C 1.40565 * 119.49812 * 267.75545 * 12 11 9 14 14 C 1.36260 * 119.43581 * 179.97438 * 13 12 11 15 15 C 1.41506 * 118.47023 * 359.97438 * 14 13 12 16 16 C 1.40795 * 120.50722 * 180.27108 * 15 14 13 17 17 H 1.08000 * 119.99895 * 149.34460 * 16 15 14 18 18 C 1.40017 * 120.00124 * 329.35285 * 16 15 14 19 19 N 1.30811 * 119.99896 * 162.35308 * 18 16 15 20 20 Si 1.86796 * 119.99762 * 342.35080 * 18 16 15 21 21 H 1.48499 * 109.47010 * 95.37509 * 20 18 16 22 22 H 1.48501 * 109.46938 * 215.37461 * 20 18 16 23 23 H 1.48503 * 109.47356 * 335.37358 * 20 18 16 24 24 C 1.41062 * 118.98430 * 0.02562 * 15 14 13 25 25 C 1.50704 * 119.77431 * 179.97438 * 24 15 14 26 26 N 1.31164 * 120.44474 * 359.97438 * 24 15 14 27 27 C 1.39772 * 119.99265 * 0.25325 * 8 7 6 28 28 C 1.37671 * 119.98616 * 359.49068 * 27 8 7 29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47014 * 299.99545 * 1 2 3 31 31 H 1.08998 * 109.47353 * 59.99398 * 1 2 3 32 32 H 1.08004 * 119.99670 * 0.02562 * 6 5 3 33 33 H 1.08000 * 120.00178 * 179.97438 * 7 6 5 34 34 H 0.97002 * 119.99525 * 175.33367 * 10 9 8 35 35 H 0.96992 * 119.99856 * 355.33104 * 10 9 8 36 36 H 1.07995 * 120.28036 * 359.97438 * 13 12 11 37 37 H 1.07997 * 120.76109 * 179.97438 * 14 13 12 38 38 H 0.97002 * 120.00046 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46924 * 90.00285 * 25 24 15 40 40 H 1.08998 * 109.46688 * 209.99536 * 25 24 15 41 41 H 1.09000 * 109.47089 * 330.00177 * 25 24 15 42 42 H 1.07993 * 120.01165 * 179.72305 * 27 8 7 43 43 H 1.08007 * 119.99608 * 180.25393 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5392 1.2777 0.0006 6 6 4.1734 2.5227 0.0011 7 6 5.5482 2.5949 0.0011 8 6 6.3095 1.4228 0.0000 9 6 7.7843 1.5002 -0.0005 10 7 8.4077 2.7236 0.0005 11 7 8.5015 0.3956 -0.0021 12 6 9.8469 0.4638 0.0985 13 6 10.6269 0.5098 -1.0700 14 6 11.9838 0.5791 -0.9671 15 6 12.5621 0.6030 0.3242 16 6 13.9592 0.6799 0.4804 17 1 14.3797 1.1753 1.3430 18 6 14.8035 0.1141 -0.4827 19 7 16.0620 0.4670 -0.5376 20 14 14.1329 -1.1445 -1.6891 21 1 13.7477 -0.4639 -2.9514 22 1 15.1763 -2.1622 -1.9737 23 1 12.9416 -1.8081 -1.1010 24 6 11.7170 0.5538 1.4526 25 6 12.3138 0.5776 2.8362 26 7 10.4153 0.4875 1.3056 27 6 5.6749 0.1775 -0.0064 28 6 4.3001 0.1058 -0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.5850 3.4284 0.0015 33 1 6.0384 3.5573 0.0011 34 1 9.3739 2.7755 0.0685 35 1 7.8819 3.5359 -0.0667 36 1 10.1547 0.4904 -2.0411 37 1 12.6037 0.6151 -1.8508 38 1 16.6470 0.0748 -1.2046 39 1 12.4048 1.6096 3.1749 40 1 11.6681 0.0265 3.5198 41 1 13.3001 0.1140 2.8144 42 1 6.2629 -0.7283 -0.0118 43 1 3.8096 -0.8565 -0.0019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159857446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:53 Heat of formation + Delta-G solvation = -23.346279 kcal Electronic energy + Delta-G solvation = -27298.869430 eV Core-core repulsion = 23308.256194 eV Total energy + Delta-G solvation = -3990.613237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66760 -40.97527 -40.08519 -38.15630 -37.47656 -35.81981 -34.20333 -33.44602 -32.59985 -32.22061 -31.42444 -28.93498 -28.77352 -26.96218 -25.37476 -23.89778 -23.43459 -22.69331 -22.07357 -20.85638 -19.42266 -19.29198 -18.53494 -18.36209 -17.92826 -17.40121 -17.30279 -16.93772 -16.30060 -15.69143 -15.49093 -15.34064 -15.22878 -14.83478 -14.69764 -14.62200 -14.50634 -14.30114 -14.11104 -13.74438 -13.51645 -13.39678 -13.11067 -13.07690 -12.94712 -12.81219 -12.62592 -12.18975 -12.12858 -11.81804 -11.81754 -11.70424 -11.51432 -11.07368 -10.30351 -10.22593 -10.13958 -10.07930 -9.22540 -9.07291 -8.95519 -6.43738 -0.73543 0.32706 0.49612 0.75939 1.06662 1.20918 1.32703 1.42586 1.64868 1.79955 2.05409 2.47666 2.65522 2.78813 3.26186 3.41371 3.63122 3.80373 3.90721 3.97983 4.20904 4.22593 4.30951 4.32201 4.36217 4.37124 4.57605 4.64845 4.73152 4.75842 4.89649 4.97056 4.98330 5.02340 5.11635 5.15332 5.18261 5.30346 5.34218 5.46399 5.54227 5.68962 5.73608 5.79852 6.03473 6.24539 6.51466 6.60969 6.70770 6.82092 7.38894 7.64566 8.09717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.002079 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.547644 B =13463.880594 C =13738.507856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.531 6.531 5 C -0.124 4.124 6 C -0.055 4.055 7 C -0.097 4.097 8 C -0.024 4.024 9 C 0.454 3.546 10 N -0.859 5.859 11 N -0.560 5.560 12 C 0.187 3.813 13 C -0.144 4.144 14 C -0.198 4.198 15 C 0.020 3.980 16 C -0.452 4.452 17 H 0.077 0.923 18 C 0.056 3.944 19 N -0.831 5.831 20 Si 0.953 3.047 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.268 1.268 24 C 0.027 3.973 25 C -0.068 4.068 26 N -0.483 5.483 27 C -0.083 4.083 28 C -0.057 4.057 29 H 0.133 0.867 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.399 0.601 35 H 0.410 0.590 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.296 0.704 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.141 0.859 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.078 2.211 -1.591 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.359 3.641 4 O -0.422 6.422 5 C -0.126 4.126 6 C -0.073 4.073 7 C -0.117 4.117 8 C -0.026 4.026 9 C 0.179 3.821 10 N -0.409 5.409 11 N -0.288 5.288 12 C -0.044 4.044 13 C -0.167 4.167 14 C -0.224 4.224 15 C 0.015 3.985 16 C -0.482 4.482 17 H 0.095 0.905 18 C -0.161 4.161 19 N -0.456 5.456 20 Si 0.777 3.223 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.118 4.118 25 C -0.126 4.126 26 N -0.196 5.196 27 C -0.103 4.103 28 C -0.075 4.075 29 H 0.151 0.849 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.229 0.771 35 H 0.242 0.758 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.159 0.841 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.628 1.485 -0.993 25.690 hybrid contribution 1.403 0.548 -1.249 1.957 sum -24.225 2.033 -2.242 24.413 Atomic orbital electron populations 1.23611 0.74098 1.05959 1.02765 1.86549 1.25384 1.31657 1.83663 1.21339 0.89302 0.81569 0.71924 1.90822 1.67342 1.36844 1.47208 1.19371 0.88861 0.95684 1.08669 1.21264 0.94058 0.97148 0.94859 1.21331 0.93123 0.98075 0.99125 1.18659 0.87649 0.95401 1.00935 1.21161 0.91836 0.82257 0.86848 1.43227 1.10815 1.06748 1.80111 1.68726 1.03810 1.24581 1.31680 1.18726 0.89816 1.07720 0.88111 1.21503 0.93942 1.03009 0.98264 1.21141 0.94740 1.09592 0.96914 1.18568 0.94601 0.93185 0.92179 1.19268 0.89633 1.32027 1.07235 0.90477 1.26669 0.94682 0.97286 0.97501 1.69678 1.06878 1.36694 1.32381 0.85663 0.78578 0.78971 0.79038 1.18285 1.19860 1.19209 1.21413 0.88139 1.06137 0.96085 1.20294 0.99855 1.01626 0.90793 1.67298 1.13276 1.13026 1.25980 1.21410 0.94335 0.97780 0.96773 1.21547 0.92744 0.98823 0.94402 0.84887 0.91712 0.91671 0.82695 0.82073 0.77141 0.75779 0.86321 0.87281 0.89306 0.91669 0.91838 0.91518 0.84131 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.72 9.80 -56.30 -0.55 -6.27 16 3 C 0.51 9.93 7.90 70.34 0.56 10.49 16 4 O -0.53 -12.54 16.12 19.94 0.32 -12.22 16 5 C -0.12 -2.23 5.88 -20.04 -0.12 -2.35 16 6 C -0.06 -0.89 9.58 22.49 0.22 -0.67 16 7 C -0.10 -1.55 9.54 22.50 0.21 -1.33 16 8 C -0.02 -0.54 5.88 -20.04 -0.12 -0.66 16 9 C 0.45 13.22 7.73 136.12 1.05 14.27 16 10 N -0.86 -21.36 8.80 -50.97 -0.45 -21.81 16 11 N -0.56 -21.16 9.50 -186.06 -1.77 -22.93 16 12 C 0.19 8.17 5.19 134.39 0.70 8.87 16 13 C -0.14 -6.34 9.95 22.38 0.22 -6.12 16 14 C -0.20 -9.40 7.21 22.61 0.16 -9.24 16 15 C 0.02 0.99 5.09 -21.16 -0.11 0.88 16 16 C -0.45 -23.82 8.51 23.33 0.20 -23.62 16 17 H 0.08 4.24 7.25 -2.91 -0.02 4.22 16 18 C 0.06 2.84 5.42 85.28 0.46 3.30 16 19 N -0.83 -42.98 13.93 21.84 0.30 -42.67 16 20 Si 0.95 42.02 24.53 68.60 1.68 43.70 16 21 H -0.26 -10.72 6.71 99.48 0.67 -10.06 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -12.69 6.86 99.48 0.68 -12.01 16 24 C 0.03 1.27 6.86 43.35 0.30 1.57 16 25 C -0.07 -2.80 9.58 71.24 0.68 -2.11 16 26 N -0.48 -22.57 10.32 -180.59 -1.86 -24.44 16 27 C -0.08 -1.79 9.57 22.51 0.22 -1.58 16 28 C -0.06 -1.00 9.60 22.49 0.22 -0.78 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.16 2.10 7.64 -2.91 -0.02 2.07 16 33 H 0.16 1.62 6.40 -2.91 -0.02 1.60 16 34 H 0.40 12.07 7.45 -92.71 -0.69 11.38 16 35 H 0.41 6.59 6.92 -92.71 -0.64 5.95 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 37 H 0.11 5.07 4.85 -2.91 -0.01 5.05 16 38 H 0.30 13.78 8.30 -92.71 -0.77 13.02 16 39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.07 2.79 6.86 -2.39 -0.02 2.77 16 42 H 0.14 3.39 7.54 -2.91 -0.02 3.37 16 43 H 0.16 2.17 7.60 -2.91 -0.02 2.14 16 Total: -1.00 -67.42 367.25 3.42 -63.99 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.30 Total: 30.22 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.05 Total: -7.59 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -3.78 Total: -111.84 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.23 Total: -18.49 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.68 Total: 43.70 kcal Total: -67.42 3.42 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159857446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.647 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds