Wall clock time and date at job start Tue Mar 31 2020 23:01:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34720 * 117.00001 * 2 1
4 4 O 1.21469 * 120.00123 * 0.02562 * 3 2 1
5 5 C 1.47765 * 119.99932 * 179.97438 * 3 2 1
6 6 C 1.39723 * 119.99353 * 180.02562 * 5 3 2
7 7 C 1.37665 * 120.00322 * 180.02562 * 6 5 3
8 8 C 1.39766 * 119.99608 * 0.02562 * 7 6 5
9 9 C 1.47680 * 120.00393 * 179.97438 * 8 7 6
10 10 N 1.37313 * 120.00154 * 0.02562 * 9 8 7
11 11 N 1.31699 * 119.99651 * 180.02562 * 9 8 7
12 12 C 1.35091 * 119.99750 * 184.95623 * 11 9 8
13 13 C 1.40565 * 119.49812 * 267.75545 * 12 11 9
14 14 C 1.36260 * 119.43581 * 179.97438 * 13 12 11
15 15 C 1.41506 * 118.47023 * 359.97438 * 14 13 12
16 16 C 1.40795 * 120.50722 * 180.27108 * 15 14 13
17 17 H 1.08000 * 119.99895 * 149.34460 * 16 15 14
18 18 C 1.40017 * 120.00124 * 329.35285 * 16 15 14
19 19 N 1.30811 * 119.99896 * 162.35308 * 18 16 15
20 20 Si 1.86796 * 119.99762 * 342.35080 * 18 16 15
21 21 H 1.48499 * 109.47010 * 95.37509 * 20 18 16
22 22 H 1.48501 * 109.46938 * 215.37461 * 20 18 16
23 23 H 1.48503 * 109.47356 * 335.37358 * 20 18 16
24 24 C 1.41062 * 118.98430 * 0.02562 * 15 14 13
25 25 C 1.50704 * 119.77431 * 179.97438 * 24 15 14
26 26 N 1.31164 * 120.44474 * 359.97438 * 24 15 14
27 27 C 1.39772 * 119.99265 * 0.25325 * 8 7 6
28 28 C 1.37671 * 119.98616 * 359.49068 * 27 8 7
29 29 H 1.09002 * 109.47099 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47014 * 299.99545 * 1 2 3
31 31 H 1.08998 * 109.47353 * 59.99398 * 1 2 3
32 32 H 1.08004 * 119.99670 * 0.02562 * 6 5 3
33 33 H 1.08000 * 120.00178 * 179.97438 * 7 6 5
34 34 H 0.97002 * 119.99525 * 175.33367 * 10 9 8
35 35 H 0.96992 * 119.99856 * 355.33104 * 10 9 8
36 36 H 1.07995 * 120.28036 * 359.97438 * 13 12 11
37 37 H 1.07997 * 120.76109 * 179.97438 * 14 13 12
38 38 H 0.97002 * 120.00046 * 179.97438 * 19 18 16
39 39 H 1.09003 * 109.46924 * 90.00285 * 25 24 15
40 40 H 1.08998 * 109.46688 * 209.99536 * 25 24 15
41 41 H 1.09000 * 109.47089 * 330.00177 * 25 24 15
42 42 H 1.07993 * 120.01165 * 179.72305 * 27 8 7
43 43 H 1.08007 * 119.99608 * 180.25393 * 28 27 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0636 1.2004 0.0000
4 8 1.4020 2.2191 0.0005
5 6 3.5392 1.2777 0.0006
6 6 4.1734 2.5227 0.0011
7 6 5.5482 2.5949 0.0011
8 6 6.3095 1.4228 0.0000
9 6 7.7843 1.5002 -0.0005
10 7 8.4077 2.7236 0.0005
11 7 8.5015 0.3956 -0.0021
12 6 9.8469 0.4638 0.0985
13 6 10.6269 0.5098 -1.0700
14 6 11.9838 0.5791 -0.9671
15 6 12.5621 0.6030 0.3242
16 6 13.9592 0.6799 0.4804
17 1 14.3797 1.1753 1.3430
18 6 14.8035 0.1141 -0.4827
19 7 16.0620 0.4670 -0.5376
20 14 14.1329 -1.1445 -1.6891
21 1 13.7477 -0.4639 -2.9514
22 1 15.1763 -2.1622 -1.9737
23 1 12.9416 -1.8081 -1.1010
24 6 11.7170 0.5538 1.4526
25 6 12.3138 0.5776 2.8362
26 7 10.4153 0.4875 1.3056
27 6 5.6749 0.1775 -0.0064
28 6 4.3001 0.1058 -0.0011
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 3.5850 3.4284 0.0015
33 1 6.0384 3.5573 0.0011
34 1 9.3739 2.7755 0.0685
35 1 7.8819 3.5359 -0.0667
36 1 10.1547 0.4904 -2.0411
37 1 12.6037 0.6151 -1.8508
38 1 16.6470 0.0748 -1.2046
39 1 12.4048 1.6096 3.1749
40 1 11.6681 0.0265 3.5198
41 1 13.3001 0.1140 2.8144
42 1 6.2629 -0.7283 -0.0118
43 1 3.8096 -0.8565 -0.0019
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001159857446.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:01:53
Heat of formation + Delta-G solvation = -23.346279 kcal
Electronic energy + Delta-G solvation = -27298.869430 eV
Core-core repulsion = 23308.256194 eV
Total energy + Delta-G solvation = -3990.613237 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.66760 -40.97527 -40.08519 -38.15630 -37.47656 -35.81981 -34.20333 -33.44602
-32.59985 -32.22061 -31.42444 -28.93498 -28.77352 -26.96218 -25.37476 -23.89778
-23.43459 -22.69331 -22.07357 -20.85638 -19.42266 -19.29198 -18.53494 -18.36209
-17.92826 -17.40121 -17.30279 -16.93772 -16.30060 -15.69143 -15.49093 -15.34064
-15.22878 -14.83478 -14.69764 -14.62200 -14.50634 -14.30114 -14.11104 -13.74438
-13.51645 -13.39678 -13.11067 -13.07690 -12.94712 -12.81219 -12.62592 -12.18975
-12.12858 -11.81804 -11.81754 -11.70424 -11.51432 -11.07368 -10.30351 -10.22593
-10.13958 -10.07930 -9.22540 -9.07291 -8.95519 -6.43738 -0.73543 0.32706
0.49612 0.75939 1.06662 1.20918 1.32703 1.42586 1.64868 1.79955
2.05409 2.47666 2.65522 2.78813 3.26186 3.41371 3.63122 3.80373
3.90721 3.97983 4.20904 4.22593 4.30951 4.32201 4.36217 4.37124
4.57605 4.64845 4.73152 4.75842 4.89649 4.97056 4.98330 5.02340
5.11635 5.15332 5.18261 5.30346 5.34218 5.46399 5.54227 5.68962
5.73608 5.79852 6.03473 6.24539 6.51466 6.60969 6.70770 6.82092
7.38894 7.64566 8.09717
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.026672 B = 0.002079 C = 0.002038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.547644 B =13463.880594 C =13738.507856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.357 6.357
3 C 0.512 3.488
4 O -0.531 6.531
5 C -0.124 4.124
6 C -0.055 4.055
7 C -0.097 4.097
8 C -0.024 4.024
9 C 0.454 3.546
10 N -0.859 5.859
11 N -0.560 5.560
12 C 0.187 3.813
13 C -0.144 4.144
14 C -0.198 4.198
15 C 0.020 3.980
16 C -0.452 4.452
17 H 0.077 0.923
18 C 0.056 3.944
19 N -0.831 5.831
20 Si 0.953 3.047
21 H -0.258 1.258
22 H -0.272 1.272
23 H -0.268 1.268
24 C 0.027 3.973
25 C -0.068 4.068
26 N -0.483 5.483
27 C -0.083 4.083
28 C -0.057 4.057
29 H 0.133 0.867
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.155 0.845
33 H 0.162 0.838
34 H 0.399 0.601
35 H 0.410 0.590
36 H 0.119 0.881
37 H 0.110 0.890
38 H 0.296 0.704
39 H 0.065 0.935
40 H 0.063 0.937
41 H 0.066 0.934
42 H 0.141 0.859
43 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.078 2.211 -1.591 25.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.273 6.273
3 C 0.359 3.641
4 O -0.422 6.422
5 C -0.126 4.126
6 C -0.073 4.073
7 C -0.117 4.117
8 C -0.026 4.026
9 C 0.179 3.821
10 N -0.409 5.409
11 N -0.288 5.288
12 C -0.044 4.044
13 C -0.167 4.167
14 C -0.224 4.224
15 C 0.015 3.985
16 C -0.482 4.482
17 H 0.095 0.905
18 C -0.161 4.161
19 N -0.456 5.456
20 Si 0.777 3.223
21 H -0.183 1.183
22 H -0.199 1.199
23 H -0.192 1.192
24 C -0.118 4.118
25 C -0.126 4.126
26 N -0.196 5.196
27 C -0.103 4.103
28 C -0.075 4.075
29 H 0.151 0.849
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.173 0.827
33 H 0.179 0.821
34 H 0.229 0.771
35 H 0.242 0.758
36 H 0.137 0.863
37 H 0.127 0.873
38 H 0.107 0.893
39 H 0.083 0.917
40 H 0.082 0.918
41 H 0.085 0.915
42 H 0.159 0.841
43 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -25.628 1.485 -0.993 25.690
hybrid contribution 1.403 0.548 -1.249 1.957
sum -24.225 2.033 -2.242 24.413
Atomic orbital electron populations
1.23611 0.74098 1.05959 1.02765 1.86549 1.25384 1.31657 1.83663
1.21339 0.89302 0.81569 0.71924 1.90822 1.67342 1.36844 1.47208
1.19371 0.88861 0.95684 1.08669 1.21264 0.94058 0.97148 0.94859
1.21331 0.93123 0.98075 0.99125 1.18659 0.87649 0.95401 1.00935
1.21161 0.91836 0.82257 0.86848 1.43227 1.10815 1.06748 1.80111
1.68726 1.03810 1.24581 1.31680 1.18726 0.89816 1.07720 0.88111
1.21503 0.93942 1.03009 0.98264 1.21141 0.94740 1.09592 0.96914
1.18568 0.94601 0.93185 0.92179 1.19268 0.89633 1.32027 1.07235
0.90477 1.26669 0.94682 0.97286 0.97501 1.69678 1.06878 1.36694
1.32381 0.85663 0.78578 0.78971 0.79038 1.18285 1.19860 1.19209
1.21413 0.88139 1.06137 0.96085 1.20294 0.99855 1.01626 0.90793
1.67298 1.13276 1.13026 1.25980 1.21410 0.94335 0.97780 0.96773
1.21547 0.92744 0.98823 0.94402 0.84887 0.91712 0.91671 0.82695
0.82073 0.77141 0.75779 0.86321 0.87281 0.89306 0.91669 0.91838
0.91518 0.84131 0.82169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.28 10.56 113.37 1.20 1.48 16
2 O -0.36 -5.72 9.80 -56.30 -0.55 -6.27 16
3 C 0.51 9.93 7.90 70.34 0.56 10.49 16
4 O -0.53 -12.54 16.12 19.94 0.32 -12.22 16
5 C -0.12 -2.23 5.88 -20.04 -0.12 -2.35 16
6 C -0.06 -0.89 9.58 22.49 0.22 -0.67 16
7 C -0.10 -1.55 9.54 22.50 0.21 -1.33 16
8 C -0.02 -0.54 5.88 -20.04 -0.12 -0.66 16
9 C 0.45 13.22 7.73 136.12 1.05 14.27 16
10 N -0.86 -21.36 8.80 -50.97 -0.45 -21.81 16
11 N -0.56 -21.16 9.50 -186.06 -1.77 -22.93 16
12 C 0.19 8.17 5.19 134.39 0.70 8.87 16
13 C -0.14 -6.34 9.95 22.38 0.22 -6.12 16
14 C -0.20 -9.40 7.21 22.61 0.16 -9.24 16
15 C 0.02 0.99 5.09 -21.16 -0.11 0.88 16
16 C -0.45 -23.82 8.51 23.33 0.20 -23.62 16
17 H 0.08 4.24 7.25 -2.91 -0.02 4.22 16
18 C 0.06 2.84 5.42 85.28 0.46 3.30 16
19 N -0.83 -42.98 13.93 21.84 0.30 -42.67 16
20 Si 0.95 42.02 24.53 68.60 1.68 43.70 16
21 H -0.26 -10.72 6.71 99.48 0.67 -10.06 16
22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
23 H -0.27 -12.69 6.86 99.48 0.68 -12.01 16
24 C 0.03 1.27 6.86 43.35 0.30 1.57 16
25 C -0.07 -2.80 9.58 71.24 0.68 -2.11 16
26 N -0.48 -22.57 10.32 -180.59 -1.86 -24.44 16
27 C -0.08 -1.79 9.57 22.51 0.22 -1.58 16
28 C -0.06 -1.00 9.60 22.49 0.22 -0.78 16
29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
32 H 0.16 2.10 7.64 -2.91 -0.02 2.07 16
33 H 0.16 1.62 6.40 -2.91 -0.02 1.60 16
34 H 0.40 12.07 7.45 -92.71 -0.69 11.38 16
35 H 0.41 6.59 6.92 -92.71 -0.64 5.95 16
36 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16
37 H 0.11 5.07 4.85 -2.91 -0.01 5.05 16
38 H 0.30 13.78 8.30 -92.71 -0.77 13.02 16
39 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16
40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
41 H 0.07 2.79 6.86 -2.39 -0.02 2.77 16
42 H 0.14 3.39 7.54 -2.91 -0.02 3.37 16
43 H 0.16 2.17 7.60 -2.91 -0.02 2.14 16
Total: -1.00 -67.42 367.25 3.42 -63.99
By element:
Atomic # 1 Polarization: 30.52 SS G_CDS: -0.30 Total: 30.22 kcal
Atomic # 6 Polarization: -13.63 SS G_CDS: 6.05 Total: -7.59 kcal
Atomic # 7 Polarization: -108.06 SS G_CDS: -3.78 Total: -111.84 kcal
Atomic # 8 Polarization: -18.26 SS G_CDS: -0.23 Total: -18.49 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 1.68 Total: 43.70 kcal
Total: -67.42 3.42 -63.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001159857446.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.647 kcal
(2) G-P(sol) polarization free energy of solvation -67.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.994 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.346 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds