Wall clock time and date at job start Tue Mar 31 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38684 * 119.27642 * 2 1 4 4 C 1.37999 * 119.62742 * 180.26111 * 3 2 1 5 5 C 1.41002 * 118.28275 * 359.45502 * 4 3 2 6 6 C 1.41016 * 120.70756 * 180.30077 * 5 4 3 7 7 H 1.08008 * 119.99631 * 204.89416 * 6 5 4 8 8 C 1.39942 * 120.00230 * 24.89313 * 6 5 4 9 9 N 1.30870 * 119.99994 * 14.49801 * 8 6 5 10 10 Si 1.86797 * 119.99996 * 194.50294 * 8 6 5 11 11 H 1.48505 * 109.47433 * 89.99778 * 10 8 6 12 12 H 1.48506 * 109.47211 * 209.99574 * 10 8 6 13 13 H 1.48506 * 109.47245 * 329.99742 * 10 8 6 14 14 C 1.41711 * 118.58654 * 0.27570 * 5 4 3 15 15 N 1.38093 * 119.90682 * 179.97438 * 14 5 4 16 16 C 1.46495 * 119.99981 * 180.02562 * 15 14 5 17 17 C 1.52998 * 109.47051 * 179.97438 * 16 15 14 18 18 N 1.46907 * 109.47307 * 179.97438 * 17 16 15 19 19 C 1.46469 * 110.99994 * 295.85850 * 18 17 16 20 20 C 1.53183 * 109.90280 * 162.99869 * 19 18 17 21 21 S 1.81815 * 108.67529 * 62.63430 * 20 19 18 22 22 O 1.42101 * 108.69815 * 193.43348 * 21 20 19 23 23 O 1.42093 * 108.83127 * 61.98722 * 21 20 19 24 24 C 1.81817 * 101.02067 * 307.68375 * 21 20 19 25 25 C 1.46472 * 111.00074 * 169.99964 * 18 17 16 26 26 N 1.31968 * 119.27826 * 179.70835 * 2 1 3 27 27 H 1.08999 * 109.46992 * 270.29610 * 1 2 3 28 28 H 1.08999 * 109.47147 * 30.29552 * 1 2 3 29 29 H 1.09000 * 109.46773 * 150.29607 * 1 2 3 30 30 H 1.08004 * 120.18815 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.86035 * 179.72935 * 4 3 2 32 32 H 0.96998 * 120.00025 * 180.02562 * 9 8 6 33 33 H 0.96996 * 119.99869 * 359.97438 * 15 14 5 34 34 H 1.08998 * 109.47418 * 299.99826 * 16 15 14 35 35 H 1.09004 * 109.47524 * 59.99536 * 16 15 14 36 36 H 1.09003 * 109.47353 * 299.99673 * 17 16 15 37 37 H 1.09001 * 109.47221 * 60.00104 * 17 16 15 38 38 H 1.09003 * 109.39891 * 283.13141 * 19 18 17 39 39 H 1.09002 * 109.39943 * 42.86607 * 19 18 17 40 40 H 1.09005 * 109.60066 * 302.88071 * 20 19 18 41 41 H 1.08997 * 109.60328 * 182.39305 * 20 19 18 42 42 H 1.08997 * 109.60545 * 292.55725 * 24 21 20 43 43 H 1.09006 * 109.60489 * 172.07291 * 24 21 20 44 44 H 1.08995 * 109.39871 * 317.13163 * 25 18 17 45 45 H 1.09006 * 109.39740 * 76.86940 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2182 -0.0055 5 6 4.2409 -0.0194 0.0009 6 6 5.6502 -0.0704 0.0021 7 1 6.1594 -0.9397 -0.3871 8 6 6.3889 1.0053 0.5076 9 7 5.7980 1.9230 1.2297 10 14 8.2183 1.1314 0.1516 11 1 8.4269 1.8994 -1.1022 12 1 8.8947 1.8266 1.2761 13 1 8.7878 -0.2314 -0.0021 14 6 3.4737 -1.2108 0.0066 15 7 4.1074 -2.4378 0.0124 16 6 3.3163 -3.6707 0.0177 17 6 4.2550 -4.8789 0.0228 18 7 3.4617 -6.1154 0.0288 19 6 2.6768 -6.2295 1.2601 20 6 1.5650 -7.2669 1.0755 21 16 2.3271 -8.8875 0.7613 22 8 1.3263 -9.7769 0.2853 23 8 3.1048 -9.2555 1.8921 24 6 3.4488 -8.4837 -0.6114 25 6 4.3116 -7.2855 -0.2037 26 7 2.1524 -1.1511 0.0059 27 1 -0.3633 0.0053 1.0276 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3633 -0.8926 -0.5092 30 1 1.6365 2.1400 -0.0004 31 1 4.1135 2.1486 -0.0100 32 1 6.3099 2.6688 1.5798 33 1 5.0763 -2.4832 0.0121 34 1 2.6874 -3.6951 0.9076 35 1 2.6878 -3.7031 -0.8723 36 1 4.8836 -4.8545 -0.8673 37 1 4.8837 -4.8468 0.9127 38 1 3.3284 -6.5387 2.0775 39 1 2.2338 -5.2624 1.4980 40 1 0.9400 -6.9862 0.2277 41 1 0.9580 -7.3173 1.9795 42 1 2.8665 -8.2305 -1.4972 43 1 4.0893 -9.3398 -0.8242 44 1 5.0228 -7.0640 -0.9994 45 1 4.8555 -7.5251 0.7101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160649351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:02 Heat of formation + Delta-G solvation = -28.103045 kcal Electronic energy + Delta-G solvation = -27094.241493 eV Core-core repulsion = 23238.865939 eV Total energy + Delta-G solvation = -3855.375554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.08077 -38.50209 -37.20837 -36.29648 -35.10375 -34.15487 -32.27335 -31.87892 -30.72913 -29.68494 -27.93435 -26.69987 -24.53816 -23.96039 -22.65048 -21.35369 -20.78081 -20.36173 -19.07290 -17.39669 -17.26309 -16.63596 -16.22543 -16.08633 -16.02283 -15.60245 -15.18056 -14.89099 -14.63030 -14.41513 -13.86895 -13.58556 -13.35258 -13.10834 -12.94251 -12.76287 -12.58079 -12.41984 -12.31003 -12.22236 -12.13662 -12.00081 -11.81164 -11.59755 -11.50892 -11.40783 -11.27916 -11.05780 -10.89498 -10.81260 -10.52901 -10.36913 -9.81338 -9.32585 -8.89031 -8.78316 -8.11149 -7.91622 -6.83510 -6.54280 -4.27023 -0.26141 2.35434 2.67429 3.02224 3.04035 3.06931 3.17197 3.19218 3.35875 3.75655 3.87430 4.13599 4.29267 4.47809 4.51490 4.62514 4.67039 4.77337 4.86948 5.13566 5.18252 5.30685 5.37608 5.42450 5.56051 5.61905 5.63316 5.81188 6.11276 6.19494 6.26392 6.41540 6.41860 6.54351 6.59842 6.65327 6.77487 6.91387 7.08562 7.18648 7.62217 7.75259 7.96600 8.23728 8.45704 8.61087 8.74888 8.94343 9.74317 10.16929 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.002677 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.227486 B =10456.406505 C =12086.517575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.027 3.973 3 C -0.186 4.186 4 C -0.122 4.122 5 C 0.029 3.971 6 C -0.455 4.455 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.800 5.800 10 Si 0.909 3.091 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.308 3.692 15 N -0.732 5.732 16 C 0.147 3.853 17 C 0.048 3.952 18 N -0.551 5.551 19 C 0.055 3.945 20 C -0.591 4.591 21 S 2.410 3.590 22 O -0.946 6.946 23 O -0.941 6.941 24 C -0.595 4.595 25 C 0.065 3.935 26 N -0.528 5.528 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.279 0.721 33 H 0.402 0.598 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -14.159 -1.971 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.149 4.149 5 C 0.022 3.978 6 C -0.487 4.487 7 H 0.092 0.908 8 C -0.143 4.143 9 N -0.426 5.426 10 Si 0.733 3.267 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.188 1.188 14 C 0.070 3.930 15 N -0.372 5.372 16 C 0.022 3.978 17 C -0.079 4.079 18 N -0.277 5.277 19 C -0.074 4.074 20 C -0.722 4.722 21 S 2.593 3.407 22 O -0.943 6.943 23 O -0.939 6.939 24 C -0.725 4.725 25 C -0.064 4.064 26 N -0.246 5.246 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.156 0.844 42 H 0.161 0.839 43 H 0.154 0.846 44 H 0.118 0.882 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.395 -15.601 -1.770 16.064 hybrid contribution 2.320 1.642 0.135 2.845 sum -1.076 -13.960 -1.636 14.096 Atomic orbital electron populations 1.20288 0.91812 1.00706 1.00357 1.19964 0.94281 0.88002 1.08543 1.21245 0.95401 0.96660 1.07499 1.21419 0.92100 0.98381 1.02975 1.17915 0.93889 0.90088 0.95907 1.19134 0.90765 1.02469 1.36298 0.90808 1.25808 1.00815 0.94912 0.92742 1.69796 1.38317 1.10239 1.24286 0.86309 0.82086 0.79408 0.78848 1.19426 1.20412 1.18791 1.18344 0.87920 0.85325 1.01405 1.43547 1.07386 1.01257 1.85024 1.20857 0.93016 0.82431 1.01529 1.22288 0.95450 0.88124 1.02046 1.61069 1.27430 1.02673 1.36508 1.21931 0.93571 1.01088 0.90778 1.30180 1.10066 1.19341 1.12587 1.08200 0.77170 0.77922 0.77387 1.93593 1.58003 1.61035 1.81645 1.93592 1.70558 1.81333 1.48382 1.30199 1.15392 1.07015 1.19904 1.21757 0.94228 0.87871 1.02562 1.66330 1.08340 1.29862 1.20057 0.93254 0.92914 0.92767 0.88763 0.85419 0.90960 0.76163 0.93125 0.92226 0.89628 0.93530 0.92291 0.87133 0.83777 0.84416 0.83900 0.84594 0.88199 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.95 16 2 C 0.03 0.60 6.79 -82.37 -0.56 0.04 16 3 C -0.19 -4.31 9.69 -39.50 -0.38 -4.70 16 4 C -0.12 -3.11 8.79 -38.62 -0.34 -3.45 16 5 C 0.03 0.73 5.60 -106.47 -0.60 0.14 16 6 C -0.46 -11.15 8.54 -37.89 -0.32 -11.48 16 7 H 0.07 1.68 6.67 -52.48 -0.35 1.33 16 8 C 0.07 1.76 5.23 -17.32 -0.09 1.67 16 9 N -0.80 -19.94 10.83 55.55 0.60 -19.33 16 10 Si 0.91 17.80 29.58 -169.99 -5.03 12.77 16 11 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 14 C 0.31 7.22 7.52 -155.02 -1.17 6.06 16 15 N -0.73 -14.01 5.61 -59.98 -0.34 -14.34 16 16 C 0.15 2.26 5.60 -4.05 -0.02 2.24 16 17 C 0.05 0.54 5.08 -3.82 -0.02 0.52 16 18 N -0.55 -5.24 4.43 -235.11 -1.04 -6.29 16 19 C 0.05 0.51 5.28 -3.96 -0.02 0.48 16 20 C -0.59 -4.41 6.58 37.25 0.25 -4.17 16 21 S 2.41 20.59 5.34 -107.50 -0.57 20.02 16 22 O -0.95 -11.25 18.11 -57.81 -1.05 -12.30 16 23 O -0.94 -11.14 18.10 -57.81 -1.05 -12.19 16 24 C -0.60 -3.80 6.57 37.25 0.24 -3.55 16 25 C 0.06 0.49 5.41 -3.96 -0.02 0.47 16 26 N -0.53 -12.31 9.44 -8.11 -0.08 -12.38 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 31 H 0.13 3.33 6.17 -52.49 -0.32 3.01 16 32 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 33 H 0.40 7.31 6.67 -40.82 -0.27 7.03 16 34 H 0.05 0.82 6.20 -51.93 -0.32 0.49 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 39 H 0.11 1.12 5.79 -51.93 -0.30 0.82 16 40 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.66 7.77 -51.93 -0.40 0.26 16 45 H 0.06 0.44 7.93 -51.93 -0.41 0.02 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -32.86 372.13 -12.19 -45.05 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.56 Total: 10.05 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.69 Total: -16.66 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.85 Total: -52.35 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -2.09 Total: -24.48 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 20.59 SS G_CDS: -0.57 Total: 20.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.86 -12.19 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160649351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.951 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds