Wall clock time and date at job start Tue Mar 31 2020 23:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48503 * 109.47410 * 89.99710 * 10 8 6 12 12 H 1.48502 * 109.47085 * 209.99709 * 10 8 6 13 13 H 1.48501 * 109.47348 * 329.99717 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46492 * 120.00166 * 179.97438 * 15 14 5 17 17 C 1.50699 * 109.47333 * 180.02562 * 16 15 14 18 18 C 1.38281 * 119.90356 * 89.99605 * 17 16 15 19 19 C 1.38312 * 120.26186 * 179.97438 * 18 17 16 20 20 C 1.38397 * 119.87189 * 0.02562 * 19 18 17 21 21 C 1.39395 * 119.87137 * 0.02562 * 20 19 18 22 22 C 1.38287 * 119.89930 * 269.73124 * 17 16 15 23 23 N 1.40200 * 119.28555 * 179.97438 * 21 20 19 24 24 C 1.35097 * 118.98264 * 15.46008 * 23 21 20 25 25 O 1.21295 * 120.13269 * 181.72436 * 24 23 21 26 26 C 1.50751 * 119.72784 * 1.70293 * 24 23 21 27 27 O 1.35987 * 120.66606 * 180.02562 * 20 19 18 28 28 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 29 29 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 30 30 H 1.09001 * 109.47545 * 29.72974 * 1 2 3 31 31 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 32 32 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 34 34 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 36 36 H 1.09004 * 109.47370 * 299.99966 * 16 15 14 37 37 H 1.08999 * 109.47386 * 59.99895 * 16 15 14 38 38 H 1.08003 * 119.86682 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.06377 * 179.97438 * 19 18 17 40 40 H 1.08006 * 120.09453 * 359.97139 * 22 17 16 41 41 H 0.96999 * 120.51148 * 195.43911 * 23 21 20 42 42 H 1.09001 * 109.44431 * 208.61601 * 26 24 23 43 43 H 1.09007 * 109.41553 * 88.70872 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4258 1.9093 -1.0911 12 1 8.8963 1.8141 1.2859 13 1 8.7878 -0.2317 -0.0115 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6708 -0.0163 17 6 4.2407 -4.8609 -0.0209 18 6 4.6638 -5.4099 1.1757 19 6 5.5119 -6.5025 1.1800 20 6 5.9392 -7.0482 -0.0179 21 6 5.5137 -6.4942 -1.2241 22 6 4.6591 -5.4040 -1.2219 23 7 5.9546 -7.0564 -2.4304 24 6 6.5111 -8.2873 -2.4141 25 8 6.9281 -8.7807 -3.4407 26 6 6.6122 -9.0448 -1.1147 27 8 6.7726 -8.1226 -0.0324 28 7 2.1523 -1.1511 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8876 -0.5181 32 1 1.6365 2.1398 0.0004 33 1 4.1134 2.1485 0.0085 34 1 6.3120 2.6537 1.6003 35 1 5.0763 -2.4832 -0.0121 36 1 2.6879 -3.7028 0.8739 37 1 2.6872 -3.6955 -0.9061 38 1 4.3300 -4.9843 2.1105 39 1 5.8406 -6.9285 2.1165 40 1 4.3239 -4.9769 -2.1555 41 1 5.8612 -6.5693 -3.2640 42 1 7.4718 -9.7141 -1.1507 43 1 5.7040 -9.6286 -0.9640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163100860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:45 Heat of formation + Delta-G solvation = -12.373385 kcal Electronic energy + Delta-G solvation = -27974.633060 eV Core-core repulsion = 23984.495644 eV Total energy + Delta-G solvation = -3990.137416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65161 -39.24394 -38.62443 -37.89945 -35.66438 -34.64417 -34.11224 -31.62358 -30.65953 -30.10167 -29.46267 -28.26119 -27.56180 -25.44518 -23.84397 -23.21337 -22.73540 -20.77897 -20.71313 -19.63614 -19.05774 -18.00722 -17.28180 -17.19442 -16.35696 -16.16353 -15.62333 -15.40328 -15.17346 -14.85967 -14.77064 -14.19398 -14.09685 -13.84825 -13.57644 -13.42681 -13.19357 -13.04764 -12.61146 -12.56722 -12.04019 -11.82868 -11.66202 -11.52996 -11.45489 -11.39181 -11.30271 -11.07396 -10.94138 -10.85123 -10.50860 -10.35648 -9.79036 -9.30401 -8.91174 -8.83786 -8.20793 -8.05001 -7.88427 -6.81344 -6.52668 -4.24653 0.84390 1.06231 2.00429 2.45677 2.69439 3.00355 3.04930 3.07649 3.08848 3.20730 3.45545 3.68741 3.90461 4.39015 4.52537 4.56364 4.65513 4.73403 4.80312 5.05144 5.14135 5.27304 5.48744 5.62912 5.73125 5.81766 5.93976 5.99212 6.12272 6.16024 6.22818 6.42143 6.43577 6.45592 6.52231 6.55561 6.60813 6.78666 6.91532 7.03170 7.11145 7.20021 7.46129 7.63741 7.77002 7.98759 8.25720 8.47887 8.63569 8.77153 8.96551 9.75217 10.18988 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.003056 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.614358 B = 9159.955382 C =10779.931808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.026 3.974 3 C -0.185 4.185 4 C -0.123 4.123 5 C 0.030 3.970 6 C -0.454 4.454 7 H 0.074 0.926 8 C 0.075 3.925 9 N -0.800 5.800 10 Si 0.907 3.093 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.307 3.693 15 N -0.726 5.726 16 C 0.186 3.814 17 C -0.081 4.081 18 C -0.088 4.088 19 C -0.108 4.108 20 C 0.074 3.926 21 C 0.086 3.914 22 C -0.102 4.102 23 N -0.657 5.657 24 C 0.491 3.509 25 O -0.517 6.517 26 C 0.051 3.949 27 O -0.303 6.303 28 N -0.529 5.529 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.279 0.721 35 H 0.404 0.596 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.417 0.583 42 H 0.144 0.856 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -14.855 -0.804 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.149 4.149 5 C 0.023 3.977 6 C -0.485 4.485 7 H 0.092 0.908 8 C -0.142 4.142 9 N -0.426 5.426 10 Si 0.731 3.269 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.187 1.187 14 C 0.069 3.931 15 N -0.367 5.367 16 C 0.061 3.939 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.127 4.127 20 C 0.027 3.973 21 C -0.009 4.009 22 C -0.123 4.123 23 N -0.304 5.304 24 C 0.277 3.723 25 O -0.393 6.393 26 C -0.027 4.027 27 O -0.217 6.217 28 N -0.247 5.247 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.241 0.759 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.256 0.744 42 H 0.162 0.838 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.815 -15.946 -0.983 15.997 hybrid contribution 1.607 1.241 -0.645 2.131 sum 0.792 -14.705 -1.628 14.816 Atomic orbital electron populations 1.20288 0.91820 1.00658 1.00384 1.19949 0.94266 0.88007 1.08653 1.21241 0.95393 0.96646 1.07497 1.21416 0.92098 0.98353 1.03037 1.17906 0.93862 0.90045 0.95873 1.19147 0.90779 1.02817 1.35794 0.90807 1.25790 1.00753 0.94878 0.92745 1.69795 1.38291 1.10555 1.23957 0.86334 0.82183 0.79485 0.78849 1.19435 1.20361 1.18745 1.18377 0.87917 0.85332 1.01454 1.43679 1.07420 1.00690 1.84886 1.19777 0.91335 0.80894 1.01899 1.20021 0.98704 0.97429 0.92074 1.21050 0.96431 0.94683 0.98559 1.20527 0.98184 0.98039 0.95929 1.18584 0.95580 0.90622 0.92473 1.17983 1.00637 0.97732 0.84569 1.20617 0.97077 0.95246 0.99400 1.43722 1.59624 1.17553 1.09511 1.21560 0.76814 0.81751 0.92131 1.90812 1.46281 1.67315 1.34855 1.23175 1.06608 0.91169 0.81765 1.86272 1.55204 1.33416 1.46825 1.66327 1.08315 1.29878 1.20190 0.93223 0.92950 0.92794 0.88786 0.85429 0.90971 0.75913 0.91982 0.92306 0.84398 0.84250 0.84674 0.74383 0.83846 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.94 16 2 C 0.03 0.58 6.79 -82.37 -0.56 0.02 16 3 C -0.19 -4.30 9.69 -39.50 -0.38 -4.68 16 4 C -0.12 -3.12 8.79 -38.62 -0.34 -3.46 16 5 C 0.03 0.76 5.60 -106.47 -0.60 0.17 16 6 C -0.45 -11.26 8.53 -37.89 -0.32 -11.58 16 7 H 0.07 1.73 6.67 -52.49 -0.35 1.38 16 8 C 0.07 1.81 5.23 -17.32 -0.09 1.72 16 9 N -0.80 -20.04 10.83 55.55 0.60 -19.44 16 10 Si 0.91 18.19 29.58 -169.99 -5.03 13.16 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 13 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 14 C 0.31 7.17 7.52 -155.02 -1.17 6.01 16 15 N -0.73 -14.03 5.60 -61.15 -0.34 -14.37 16 16 C 0.19 2.89 5.80 -5.20 -0.03 2.86 16 17 C -0.08 -1.02 5.25 -104.59 -0.55 -1.57 16 18 C -0.09 -1.00 9.69 -39.54 -0.38 -1.38 16 19 C -0.11 -1.13 10.00 -39.50 -0.39 -1.53 16 20 C 0.07 0.83 6.44 -39.09 -0.25 0.58 16 21 C 0.09 0.97 6.54 -83.50 -0.55 0.42 16 22 C -0.10 -1.19 9.60 -39.46 -0.38 -1.57 16 23 N -0.66 -6.96 5.47 -9.67 -0.05 -7.01 16 24 C 0.49 5.42 7.94 -10.82 -0.09 5.33 16 25 O -0.52 -7.21 17.95 5.54 0.10 -7.11 16 26 C 0.05 0.42 7.17 36.03 0.26 0.68 16 27 O -0.30 -3.18 10.46 -19.70 -0.21 -3.38 16 28 N -0.53 -12.24 9.44 -8.11 -0.08 -12.32 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.13 3.34 6.17 -52.49 -0.32 3.01 16 34 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 35 H 0.40 7.71 6.66 -40.82 -0.27 7.44 16 36 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.42 3.89 8.89 -40.82 -0.36 3.52 16 42 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -30.01 367.12 -10.01 -40.02 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.08 Total: 13.85 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -5.45 Total: -8.92 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.13 Total: -53.14 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.11 Total: -10.49 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.01 -10.01 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163100860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.644 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds