Wall clock time and date at job start Tue Mar 31 2020 23:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48503 * 109.47410 * 89.99710 * 10 8 6 12 12 H 1.48502 * 109.47085 * 209.99709 * 10 8 6 13 13 H 1.48501 * 109.47348 * 329.99717 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46492 * 120.00166 * 179.97438 * 15 14 5 17 17 C 1.50699 * 109.47333 * 180.02562 * 16 15 14 18 18 C 1.38281 * 119.90356 * 89.99605 * 17 16 15 19 19 C 1.38312 * 120.26186 * 179.97438 * 18 17 16 20 20 C 1.38397 * 119.87189 * 0.02562 * 19 18 17 21 21 C 1.39395 * 119.87137 * 0.02562 * 20 19 18 22 22 C 1.38287 * 119.89930 * 269.73124 * 17 16 15 23 23 N 1.40200 * 119.28555 * 179.97438 * 21 20 19 24 24 C 1.35097 * 118.98264 * 15.46008 * 23 21 20 25 25 O 1.21295 * 120.13269 * 181.72436 * 24 23 21 26 26 C 1.50751 * 119.72784 * 1.70293 * 24 23 21 27 27 O 1.35987 * 120.66606 * 180.02562 * 20 19 18 28 28 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 29 29 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 30 30 H 1.09001 * 109.47545 * 29.72974 * 1 2 3 31 31 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 32 32 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 34 34 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 36 36 H 1.09004 * 109.47370 * 299.99966 * 16 15 14 37 37 H 1.08999 * 109.47386 * 59.99895 * 16 15 14 38 38 H 1.08003 * 119.86682 * 0.02562 * 18 17 16 39 39 H 1.08001 * 120.06377 * 179.97438 * 19 18 17 40 40 H 1.08006 * 120.09453 * 359.97139 * 22 17 16 41 41 H 0.96999 * 120.51148 * 195.43911 * 23 21 20 42 42 H 1.09001 * 109.44431 * 208.61601 * 26 24 23 43 43 H 1.09007 * 109.41553 * 88.70872 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4258 1.9093 -1.0911 12 1 8.8963 1.8141 1.2859 13 1 8.7878 -0.2317 -0.0115 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6708 -0.0163 17 6 4.2407 -4.8609 -0.0209 18 6 4.6638 -5.4099 1.1757 19 6 5.5119 -6.5025 1.1800 20 6 5.9392 -7.0482 -0.0179 21 6 5.5137 -6.4942 -1.2241 22 6 4.6591 -5.4040 -1.2219 23 7 5.9546 -7.0564 -2.4304 24 6 6.5111 -8.2873 -2.4141 25 8 6.9281 -8.7807 -3.4407 26 6 6.6122 -9.0448 -1.1147 27 8 6.7726 -8.1226 -0.0324 28 7 2.1523 -1.1511 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8876 -0.5181 32 1 1.6365 2.1398 0.0004 33 1 4.1134 2.1485 0.0085 34 1 6.3120 2.6537 1.6003 35 1 5.0763 -2.4832 -0.0121 36 1 2.6879 -3.7028 0.8739 37 1 2.6872 -3.6955 -0.9061 38 1 4.3300 -4.9843 2.1105 39 1 5.8406 -6.9285 2.1165 40 1 4.3239 -4.9769 -2.1555 41 1 5.8612 -6.5693 -3.2640 42 1 7.4718 -9.7141 -1.1507 43 1 5.7040 -9.6286 -0.9640 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163100860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:45 Heat of formation + Delta-G solvation = -30.466531 kcal Electronic energy + Delta-G solvation = -27975.417638 eV Core-core repulsion = 23984.495644 eV Total energy + Delta-G solvation = -3990.921994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49344 -40.48375 -40.02798 -38.83626 -36.74186 -36.03397 -35.79423 -32.95390 -32.32409 -31.08509 -30.72213 -29.51841 -28.89570 -26.70813 -25.44687 -24.14296 -23.75727 -22.50776 -22.39482 -20.54737 -19.89792 -19.10616 -18.90713 -18.10504 -17.68251 -17.26678 -17.18539 -16.64596 -16.26966 -15.89963 -15.73371 -15.56652 -15.34324 -15.12702 -14.90315 -14.74547 -14.32132 -14.14962 -14.02986 -13.81481 -13.66985 -13.29940 -13.16809 -12.96777 -12.80184 -12.71253 -12.51862 -12.29215 -12.23544 -12.12158 -11.86179 -11.58071 -11.24363 -11.09178 -10.56552 -9.95315 -9.76569 -9.66581 -9.02477 -8.60357 -8.26417 -6.10249 -0.05306 0.17021 0.93697 1.15831 1.25905 1.40866 1.51609 1.52931 1.64997 2.22659 2.22753 2.49671 2.84056 2.90318 3.07018 3.54071 3.74088 3.81274 3.99365 4.13210 4.15789 4.22252 4.26034 4.43790 4.56339 4.60164 4.77274 4.77663 4.83713 4.94869 5.01488 5.05499 5.08086 5.10593 5.22586 5.29613 5.37431 5.46610 5.55961 5.59704 5.70485 5.84280 5.94202 6.16773 6.20182 6.44607 6.62539 6.80222 6.87075 6.94590 7.18314 7.96591 8.41761 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010719 B = 0.003056 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.614358 B = 9159.955382 C =10779.931808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.023 3.977 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.005 4.005 6 C -0.477 4.477 7 H 0.079 0.921 8 C 0.035 3.965 9 N -0.834 5.834 10 Si 0.976 3.024 11 H -0.268 1.268 12 H -0.273 1.273 13 H -0.257 1.257 14 C 0.304 3.696 15 N -0.720 5.720 16 C 0.193 3.807 17 C -0.093 4.093 18 C -0.086 4.086 19 C -0.104 4.104 20 C 0.073 3.927 21 C 0.082 3.918 22 C -0.102 4.102 23 N -0.656 5.656 24 C 0.488 3.512 25 O -0.551 6.551 26 C 0.052 3.948 27 O -0.307 6.307 28 N -0.539 5.539 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.284 0.716 35 H 0.403 0.597 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.140 0.860 41 H 0.420 0.580 42 H 0.168 0.832 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -16.593 -0.415 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.111 4.111 3 C -0.224 4.224 4 C -0.173 4.173 5 C -0.012 4.012 6 C -0.508 4.508 7 H 0.097 0.903 8 C -0.178 4.178 9 N -0.461 5.461 10 Si 0.798 3.202 11 H -0.193 1.193 12 H -0.198 1.198 13 H -0.181 1.181 14 C 0.066 3.934 15 N -0.359 5.359 16 C 0.069 3.931 17 C -0.094 4.094 18 C -0.106 4.106 19 C -0.122 4.122 20 C 0.026 3.974 21 C -0.014 4.014 22 C -0.123 4.123 23 N -0.303 5.303 24 C 0.276 3.724 25 O -0.429 6.429 26 C -0.026 4.026 27 O -0.222 6.222 28 N -0.258 5.258 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.157 0.843 41 H 0.259 0.741 42 H 0.185 0.815 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.678 -17.710 -0.587 17.733 hybrid contribution 1.460 1.703 -0.770 2.371 sum 0.782 -16.007 -1.357 16.083 Atomic orbital electron populations 1.20344 0.88264 1.02256 1.01767 1.20771 0.96711 0.87482 1.06162 1.21480 0.94784 0.98123 1.07987 1.21436 0.93270 0.97964 1.04601 1.18241 0.94712 0.90923 0.97334 1.19365 0.90993 1.03744 1.36743 0.90317 1.26573 1.04921 0.94247 0.92105 1.69869 1.40036 1.11268 1.24944 0.85286 0.76838 0.79555 0.78549 1.19321 1.19806 1.18096 1.18652 0.88220 0.86340 1.00214 1.43814 1.07645 1.00783 1.83642 1.19765 0.91533 0.80449 1.01358 1.19740 0.99521 0.97011 0.93122 1.21152 0.96309 0.94798 0.98311 1.20728 0.97430 0.97370 0.96716 1.18775 0.95195 0.90826 0.92563 1.17989 1.00719 0.97731 0.84913 1.20620 0.97030 0.95345 0.99291 1.43767 1.59257 1.17680 1.09576 1.22104 0.75875 0.81623 0.92773 1.90799 1.47828 1.68004 1.36289 1.23461 1.09131 0.90522 0.79440 1.86269 1.55021 1.33416 1.47469 1.66518 1.08046 1.30206 1.21048 0.91784 0.90716 0.91867 0.86753 0.87184 0.90554 0.75974 0.92427 0.92731 0.83696 0.81968 0.84258 0.74061 0.81457 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.15 71.24 0.72 -1.55 16 2 C 0.02 1.02 6.79 42.64 0.29 1.31 16 3 C -0.20 -9.40 9.69 22.32 0.22 -9.19 16 4 C -0.15 -7.68 8.79 22.89 0.20 -7.48 16 5 C -0.01 -0.27 5.60 -21.06 -0.12 -0.39 16 6 C -0.48 -24.25 8.53 23.37 0.20 -24.05 16 7 H 0.08 3.76 6.67 -2.91 -0.02 3.74 16 8 C 0.03 1.71 5.23 85.25 0.45 2.15 16 9 N -0.83 -43.00 10.83 21.83 0.24 -42.76 16 10 Si 0.98 37.59 29.58 68.60 2.03 39.62 16 11 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 12 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 13 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 14 C 0.30 14.44 7.52 134.05 1.01 15.44 16 15 N -0.72 -27.97 5.60 -347.39 -1.95 -29.92 16 16 C 0.19 5.94 5.80 85.63 0.50 6.43 16 17 C -0.09 -2.25 5.25 -19.84 -0.10 -2.36 16 18 C -0.09 -1.82 9.69 22.30 0.22 -1.61 16 19 C -0.10 -1.92 10.00 22.33 0.22 -1.70 16 20 C 0.07 1.48 6.44 22.59 0.15 1.62 16 21 C 0.08 1.72 6.54 38.15 0.25 1.97 16 22 C -0.10 -2.27 9.60 22.35 0.21 -2.06 16 23 N -0.66 -13.14 5.47 -302.70 -1.66 -14.80 16 24 C 0.49 10.04 7.94 87.62 0.70 10.74 16 25 O -0.55 -14.88 17.95 -3.07 -0.06 -14.94 16 26 C 0.05 0.71 7.17 71.25 0.51 1.22 16 27 O -0.31 -5.60 10.46 -93.40 -0.98 -6.57 16 28 N -0.54 -24.87 9.44 -179.57 -1.70 -26.56 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.11 6.05 6.17 -2.91 -0.02 6.03 16 34 H 0.28 13.40 8.30 -92.71 -0.77 12.63 16 35 H 0.40 15.54 6.66 -92.71 -0.62 14.93 16 36 H 0.06 1.83 8.08 -2.38 -0.02 1.81 16 37 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.42 7.58 8.89 -92.71 -0.82 6.76 16 42 H 0.17 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -65.69 367.12 1.19 -64.49 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: -0.36 Total: 40.92 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.61 Total: -9.48 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.06 Total: -114.04 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.03 Total: -21.51 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -65.69 1.19 -64.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163100860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.028 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds