Wall clock time and date at job start Tue Mar 31 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86799 * 120.00318 * 2 1 4 4 H 1.48499 * 109.47077 * 240.00011 * 3 2 1 5 5 H 1.48499 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47250 * 119.99698 * 3 2 1 7 7 C 1.39868 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00372 * 163.27709 * 7 2 1 9 9 C 1.41206 * 119.99933 * 343.27842 * 7 2 1 10 10 C 1.41316 * 120.57124 * 335.73599 * 9 7 2 11 11 C 1.36563 * 118.41083 * 179.72395 * 10 9 7 12 12 C 1.39707 * 119.48851 * 0.50092 * 11 10 9 13 13 N 1.38375 * 119.43189 * 179.76281 * 12 11 10 14 14 C 1.46504 * 119.99446 * 359.72826 * 13 12 11 15 15 C 1.52995 * 120.25982 * 248.19272 * 14 13 12 16 16 C 1.53140 * 60.65939 * 248.56365 * 15 14 13 17 17 H 1.09002 * 120.42146 * 111.48934 * 16 15 14 18 18 C 1.54394 * 118.03136 * 268.64335 * 16 15 14 19 19 N 1.48147 * 104.71827 * 87.03775 * 18 16 15 20 20 C 1.34779 * 127.83780 * 140.35532 * 19 18 16 21 21 O 1.21692 * 119.99972 * 180.02562 * 20 19 18 22 22 C 1.46656 * 120.00073 * 0.02787 * 20 19 18 23 23 C 1.36538 * 125.98859 * 180.02562 * 22 20 19 24 24 C 1.40367 * 106.70627 * 179.97438 * 23 22 20 25 25 C 1.35124 * 107.11752 * 359.97438 * 24 23 22 26 26 O 1.33930 * 108.76615 * 359.77383 * 25 24 23 27 27 C 1.48145 * 104.32276 * 320.35838 * 19 18 16 28 28 N 1.32740 * 121.14382 * 359.48497 * 12 11 10 29 29 C 1.31493 * 121.72468 * 0.25554 * 28 12 11 30 30 H 0.97000 * 119.99423 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.79785 * 359.97438 * 10 9 7 32 32 H 1.07995 * 120.25606 * 180.26317 * 11 10 9 33 33 H 0.96997 * 120.00291 * 179.72446 * 13 12 11 34 34 H 1.09007 * 117.44599 * 356.17732 * 15 14 13 35 35 H 1.09007 * 117.44348 * 140.87706 * 15 14 13 36 36 H 1.09003 * 110.40549 * 328.19564 * 18 16 15 37 37 H 1.08997 * 110.40921 * 205.88129 * 18 16 15 38 38 H 1.07998 * 126.64849 * 359.92405 * 23 22 20 39 39 H 1.08001 * 126.43742 * 179.97438 * 24 23 22 40 40 H 1.07996 * 125.61953 * 180.02562 * 25 24 23 41 41 H 1.09005 * 110.40904 * 158.37073 * 27 19 18 42 42 H 1.08999 * 110.40568 * 280.68085 * 27 19 18 43 43 H 1.07999 * 119.81138 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0083 -1.2113 0.0005 8 1 3.0540 -1.2313 -0.2686 9 6 1.3470 -2.4082 0.3529 10 6 0.1947 -2.3787 1.1704 11 6 -0.4132 -3.5619 1.4793 12 6 0.1212 -4.7574 0.9924 13 7 -0.4928 -5.9560 1.3102 14 6 -1.6895 -5.9644 2.1553 15 6 -1.6333 -6.5552 3.5655 16 6 -2.4456 -7.2723 2.4833 17 1 -2.1196 -8.2384 2.0978 18 6 -3.9397 -6.9114 2.3389 19 7 -3.9588 -5.7466 1.4236 20 6 -4.8366 -5.4868 0.4343 21 8 -4.7167 -4.4784 -0.2362 22 6 -5.9363 -6.4193 0.1661 23 6 -6.8902 -6.2782 -0.8006 24 6 -7.7355 -7.3942 -0.6993 25 6 -7.2662 -8.1581 0.3116 26 8 -6.1789 -7.5701 0.8272 27 6 -2.7942 -4.9324 1.8422 28 7 1.2049 -4.7630 0.2258 29 6 1.8240 -3.6509 -0.1044 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1982 -1.4426 1.5388 32 1 -1.2981 -3.5738 2.0983 33 1 -0.1311 -6.7906 0.9733 34 1 -0.6976 -7.0180 3.8794 35 1 -2.1869 -6.0380 4.3493 36 1 -4.3607 -6.6407 3.3072 37 1 -4.4919 -7.7449 1.9049 38 1 -6.9778 -5.4651 -1.5059 39 1 -8.5988 -7.6029 -1.3138 40 1 -7.6946 -9.0914 0.6460 41 1 -2.4803 -4.2735 1.0325 42 1 -3.0369 -4.3511 2.7317 43 1 2.7036 -3.6914 -0.7297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163627903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:11 Heat of formation + Delta-G solvation = 78.891289 kcal Electronic energy + Delta-G solvation = -28596.372113 eV Core-core repulsion = 24610.192230 eV Total energy + Delta-G solvation = -3986.179883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.91008 -40.53316 -38.66585 -38.03159 -34.76508 -33.87055 -33.25182 -32.40047 -30.77920 -30.26774 -28.85813 -28.11341 -26.50871 -24.83781 -23.04087 -22.07633 -21.81185 -21.46380 -20.90371 -20.01334 -19.58604 -17.90810 -17.28048 -16.86794 -16.60275 -16.32876 -15.83584 -15.74721 -15.32976 -15.00873 -14.37248 -13.89547 -13.77084 -13.68843 -13.41338 -13.28093 -13.00252 -12.97099 -12.79870 -12.65021 -12.08984 -11.90616 -11.74483 -11.67543 -11.48696 -11.28026 -11.04627 -10.68851 -10.54936 -10.46775 -10.30714 -10.06233 -9.71617 -9.34872 -9.05790 -8.78929 -8.65075 -8.22282 -8.00686 -6.83064 -6.60350 -4.18393 0.87993 2.12403 2.37398 2.75416 2.87474 3.00846 3.08968 3.10435 3.13097 3.26683 3.47724 3.80990 3.98073 4.31863 4.42066 4.55911 4.66410 4.68419 4.73138 4.86136 5.02627 5.26213 5.32847 5.46144 5.50276 5.55051 5.65462 5.70372 5.76098 5.86317 5.95732 5.98505 6.07092 6.12976 6.15321 6.47750 6.59596 6.65822 6.87183 7.18928 7.33125 7.36086 7.42152 7.73656 7.92173 7.96201 8.23330 8.40464 8.63321 8.85730 8.90905 9.70391 10.25490 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002847 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.787270 B = 9831.986771 C =10999.055509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.094 4.094 11 C -0.204 4.204 12 C 0.274 3.726 13 N -0.701 5.701 14 C 0.123 3.877 15 C -0.145 4.145 16 C -0.190 4.190 17 H 0.123 0.877 18 C 0.126 3.874 19 N -0.614 5.614 20 C 0.618 3.382 21 O -0.508 6.508 22 C -0.067 4.067 23 C -0.123 4.123 24 C -0.223 4.223 25 C -0.015 4.015 26 O -0.162 6.162 27 C 0.126 3.874 28 N -0.519 5.519 29 C 0.008 3.992 30 H 0.281 0.719 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.394 0.606 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 -14.629 6.239 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.096 0.904 9 C 0.029 3.971 10 C -0.120 4.120 11 C -0.227 4.227 12 C 0.043 3.957 13 N -0.337 5.337 14 C 0.030 3.970 15 C -0.185 4.185 16 C -0.210 4.210 17 H 0.141 0.859 18 C 0.004 3.996 19 N -0.347 5.347 20 C 0.407 3.593 21 O -0.384 6.384 22 C -0.119 4.119 23 C -0.144 4.144 24 C -0.242 4.242 25 C -0.085 4.085 26 O -0.057 6.057 27 C 0.004 3.996 28 N -0.233 5.233 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.229 0.771 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.070 -14.623 5.740 21.090 hybrid contribution -0.061 1.069 -0.077 1.073 sum -14.131 -13.555 5.662 20.384 Atomic orbital electron populations 1.69813 1.07447 1.29238 1.36282 1.25870 0.94740 1.01206 0.92513 0.86356 0.80048 0.80359 0.79864 1.19081 1.20455 1.18957 1.19302 0.97605 0.90857 1.40973 0.90420 1.18368 0.93302 0.93561 0.91895 1.21330 0.97001 0.96565 0.97122 1.21063 1.02326 0.92779 1.06571 1.17593 0.93284 0.84815 1.00035 1.42638 1.28179 1.06080 1.56841 1.21239 0.87970 0.94286 0.93512 1.23620 1.01060 1.01480 0.92384 1.24096 0.92940 0.97691 1.06256 0.85917 1.22019 0.94797 0.88987 0.93823 1.49136 1.28286 1.24683 1.32611 1.16135 0.79599 0.84198 0.79398 1.90965 1.72947 1.26237 1.48284 1.22072 1.01470 0.89092 0.99243 1.22006 0.93775 0.99933 0.98645 1.21855 1.03762 0.96492 1.02101 1.24431 0.87798 0.99691 0.96580 1.84148 1.39840 1.30438 1.51317 1.22423 0.82310 0.92618 1.02235 1.66464 1.08754 1.33052 1.15072 1.22167 1.01663 0.87257 1.03895 0.90861 0.85388 0.87754 0.77148 0.87485 0.88276 0.90277 0.88790 0.82140 0.82639 0.77445 0.86808 0.89587 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.02 10.91 55.54 0.61 -20.41 16 2 C 0.07 1.85 5.19 -17.34 -0.09 1.76 16 3 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.11 9.07 -37.85 -0.34 -12.45 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.03 0.91 5.59 -106.65 -0.60 0.31 16 10 C -0.09 -2.43 8.74 -39.02 -0.34 -2.77 16 11 C -0.20 -4.75 7.88 -39.64 -0.31 -5.06 16 12 C 0.27 6.28 7.48 -155.12 -1.16 5.12 16 13 N -0.70 -12.86 5.83 -46.22 -0.27 -13.13 16 14 C 0.12 1.82 2.94 -130.26 -0.38 1.43 16 15 C -0.14 -1.62 10.05 -26.66 -0.27 -1.89 16 16 C -0.19 -2.09 7.16 -88.98 -0.64 -2.72 16 17 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 18 C 0.13 1.35 6.50 -2.41 -0.02 1.33 16 19 N -0.61 -8.97 3.32 -170.85 -0.57 -9.53 16 20 C 0.62 10.12 7.88 -12.86 -0.10 10.02 16 21 O -0.51 -10.35 17.13 5.20 0.09 -10.26 16 22 C -0.07 -0.88 6.98 -36.80 -0.26 -1.14 16 23 C -0.12 -1.44 10.62 -39.39 -0.42 -1.85 16 24 C -0.22 -1.88 10.87 -39.89 -0.43 -2.32 16 25 C -0.02 -0.11 12.08 29.62 0.36 0.24 16 26 O -0.16 -1.68 7.80 4.99 0.04 -1.64 16 27 C 0.13 2.02 4.68 -2.41 -0.01 2.01 16 28 N -0.52 -12.84 10.37 -11.79 -0.12 -12.97 16 29 C 0.01 0.21 10.97 -16.75 -0.18 0.03 16 30 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 31 H 0.13 3.40 6.20 -52.49 -0.33 3.07 16 32 H 0.10 2.15 4.62 -52.49 -0.24 1.91 16 33 H 0.39 6.80 8.95 -40.82 -0.37 6.44 16 34 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.92 5.54 -51.93 -0.29 0.63 16 38 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.21 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.11 2.31 5.71 -51.93 -0.30 2.02 16 42 H 0.09 1.22 7.93 -51.93 -0.41 0.80 16 43 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -32.27 360.89 -9.87 -42.15 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -4.86 Total: 14.45 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -5.20 Total: -7.94 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.35 Total: -56.04 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.13 Total: -11.90 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.27 -9.87 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163627903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.037 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds