Wall clock time and date at job start Tue Mar 31 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86799 * 120.00318 * 2 1 4 4 H 1.48499 * 109.47077 * 240.00011 * 3 2 1 5 5 H 1.48499 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48489 * 109.47250 * 119.99698 * 3 2 1 7 7 C 1.39868 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00372 * 163.27709 * 7 2 1 9 9 C 1.41206 * 119.99933 * 343.27842 * 7 2 1 10 10 C 1.41316 * 120.57124 * 335.73599 * 9 7 2 11 11 C 1.36563 * 118.41083 * 179.72395 * 10 9 7 12 12 C 1.39707 * 119.48851 * 0.50092 * 11 10 9 13 13 N 1.38375 * 119.43189 * 179.76281 * 12 11 10 14 14 C 1.46504 * 119.99446 * 359.72826 * 13 12 11 15 15 C 1.52995 * 120.25982 * 248.19272 * 14 13 12 16 16 C 1.53140 * 60.65939 * 248.56365 * 15 14 13 17 17 H 1.09002 * 120.42146 * 111.48934 * 16 15 14 18 18 C 1.54394 * 118.03136 * 268.64335 * 16 15 14 19 19 N 1.48147 * 104.71827 * 87.03775 * 18 16 15 20 20 C 1.34779 * 127.83780 * 140.35532 * 19 18 16 21 21 O 1.21692 * 119.99972 * 180.02562 * 20 19 18 22 22 C 1.46656 * 120.00073 * 0.02787 * 20 19 18 23 23 C 1.36538 * 125.98859 * 180.02562 * 22 20 19 24 24 C 1.40367 * 106.70627 * 179.97438 * 23 22 20 25 25 C 1.35124 * 107.11752 * 359.97438 * 24 23 22 26 26 O 1.33930 * 108.76615 * 359.77383 * 25 24 23 27 27 C 1.48145 * 104.32276 * 320.35838 * 19 18 16 28 28 N 1.32740 * 121.14382 * 359.48497 * 12 11 10 29 29 C 1.31493 * 121.72468 * 0.25554 * 28 12 11 30 30 H 0.97000 * 119.99423 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.79785 * 359.97438 * 10 9 7 32 32 H 1.07995 * 120.25606 * 180.26317 * 11 10 9 33 33 H 0.96997 * 120.00291 * 179.72446 * 13 12 11 34 34 H 1.09007 * 117.44599 * 356.17732 * 15 14 13 35 35 H 1.09007 * 117.44348 * 140.87706 * 15 14 13 36 36 H 1.09003 * 110.40549 * 328.19564 * 18 16 15 37 37 H 1.08997 * 110.40921 * 205.88129 * 18 16 15 38 38 H 1.07998 * 126.64849 * 359.92405 * 23 22 20 39 39 H 1.08001 * 126.43742 * 179.97438 * 24 23 22 40 40 H 1.07996 * 125.61953 * 180.02562 * 25 24 23 41 41 H 1.09005 * 110.40904 * 158.37073 * 27 19 18 42 42 H 1.08999 * 110.40568 * 280.68085 * 27 19 18 43 43 H 1.07999 * 119.81138 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0083 -1.2113 0.0005 8 1 3.0540 -1.2313 -0.2686 9 6 1.3470 -2.4082 0.3529 10 6 0.1947 -2.3787 1.1704 11 6 -0.4132 -3.5619 1.4793 12 6 0.1212 -4.7574 0.9924 13 7 -0.4928 -5.9560 1.3102 14 6 -1.6895 -5.9644 2.1553 15 6 -1.6333 -6.5552 3.5655 16 6 -2.4456 -7.2723 2.4833 17 1 -2.1196 -8.2384 2.0978 18 6 -3.9397 -6.9114 2.3389 19 7 -3.9588 -5.7466 1.4236 20 6 -4.8366 -5.4868 0.4343 21 8 -4.7167 -4.4784 -0.2362 22 6 -5.9363 -6.4193 0.1661 23 6 -6.8902 -6.2782 -0.8006 24 6 -7.7355 -7.3942 -0.6993 25 6 -7.2662 -8.1581 0.3116 26 8 -6.1789 -7.5701 0.8272 27 6 -2.7942 -4.9324 1.8422 28 7 1.2049 -4.7630 0.2258 29 6 1.8240 -3.6509 -0.1044 30 1 -0.4849 0.8401 -0.0004 31 1 -0.1982 -1.4426 1.5388 32 1 -1.2981 -3.5738 2.0983 33 1 -0.1311 -6.7906 0.9733 34 1 -0.6976 -7.0180 3.8794 35 1 -2.1869 -6.0380 4.3493 36 1 -4.3607 -6.6407 3.3072 37 1 -4.4919 -7.7449 1.9049 38 1 -6.9778 -5.4651 -1.5059 39 1 -8.5988 -7.6029 -1.3138 40 1 -7.6946 -9.0914 0.6460 41 1 -2.4803 -4.2735 1.0325 42 1 -3.0369 -4.3511 2.7317 43 1 2.7036 -3.6914 -0.7297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163627903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:10 Heat of formation + Delta-G solvation = 57.897894 kcal Electronic energy + Delta-G solvation = -28597.282455 eV Core-core repulsion = 24610.192230 eV Total energy + Delta-G solvation = -3987.090225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.69030 -41.69963 -40.29170 -39.47782 -36.38044 -35.37342 -34.13657 -33.83770 -32.64822 -31.23070 -30.66805 -29.24940 -27.56997 -26.68940 -24.19437 -23.53598 -23.07144 -22.71703 -22.06677 -20.99331 -20.88979 -19.24159 -18.92987 -18.05526 -17.89369 -17.47654 -17.19517 -16.91932 -16.65546 -16.37491 -15.88833 -15.46349 -15.08161 -14.93256 -14.65880 -14.50005 -14.35799 -14.03990 -13.97364 -13.68147 -13.56921 -13.51842 -13.24152 -13.10562 -13.00587 -12.76141 -12.61607 -12.26260 -11.90632 -11.70160 -11.63891 -11.26057 -11.08482 -11.07091 -10.31616 -10.19023 -10.09012 -9.94897 -9.63197 -8.68385 -8.42209 -6.16438 -0.03050 0.85767 1.09568 1.38223 1.39548 1.42412 1.51183 1.56606 1.93449 1.99768 2.22978 2.39430 2.48462 2.80352 3.35056 3.44584 3.58459 3.75345 3.86136 3.92373 4.01271 4.09749 4.16819 4.29947 4.35183 4.51480 4.60578 4.64172 4.69634 4.78415 4.80091 4.84375 4.91376 4.93093 5.00178 5.08247 5.16786 5.25201 5.37822 5.39844 5.55131 5.83183 5.85375 5.95368 6.26526 6.44749 6.57528 6.77984 6.79216 6.90043 7.06412 7.79229 8.37597 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002847 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.787270 B = 9831.986771 C =10999.055509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.110 4.110 11 C -0.205 4.205 12 C 0.286 3.714 13 N -0.694 5.694 14 C 0.072 3.928 15 C -0.116 4.116 16 C -0.155 4.155 17 H 0.142 0.858 18 C 0.124 3.876 19 N -0.614 5.614 20 C 0.609 3.391 21 O -0.572 6.572 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.234 4.234 25 C 0.017 3.983 26 O -0.161 6.161 27 C 0.125 3.875 28 N -0.535 5.535 29 C -0.007 4.007 30 H 0.286 0.714 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.184 0.816 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 -17.646 8.245 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.098 0.902 9 C -0.003 4.003 10 C -0.137 4.137 11 C -0.229 4.229 12 C 0.052 3.948 13 N -0.330 5.330 14 C -0.019 4.019 15 C -0.156 4.156 16 C -0.175 4.175 17 H 0.159 0.841 18 C 0.004 3.996 19 N -0.346 5.346 20 C 0.400 3.600 21 O -0.454 6.454 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.252 4.252 25 C -0.052 4.052 26 O -0.057 6.057 27 C 0.002 3.998 28 N -0.250 5.250 29 C -0.164 4.164 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.235 0.765 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.167 0.833 39 H 0.202 0.798 40 H 0.278 0.722 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.893 -17.719 7.793 25.046 hybrid contribution 0.277 1.726 -0.676 1.874 sum -15.616 -15.993 7.117 23.458 Atomic orbital electron populations 1.69892 1.09023 1.30418 1.37170 1.26760 0.95470 1.04567 0.91419 0.85203 0.78605 0.75505 0.80076 1.18442 1.19573 1.18262 1.19557 0.97949 0.91833 1.42765 0.90210 1.18666 0.94247 0.94411 0.93021 1.21353 0.97492 0.97036 0.97848 1.21289 1.02700 0.92274 1.06609 1.17942 0.92295 0.86513 0.98063 1.42675 1.28749 1.04530 1.57081 1.21510 0.87113 0.96966 0.96308 1.23720 1.01629 0.99534 0.90727 1.24289 0.92359 0.96410 1.04414 0.84069 1.22334 0.94925 0.88068 0.94305 1.49240 1.27245 1.25488 1.32585 1.16625 0.80315 0.84115 0.78931 1.90912 1.74832 1.29034 1.50575 1.21430 1.01864 0.90635 1.01423 1.22250 0.94133 1.00741 0.97822 1.22197 1.04395 0.95358 1.03277 1.25516 0.85347 0.99893 0.94491 1.84113 1.41032 1.29367 1.51172 1.22249 0.83729 0.92996 1.00780 1.66558 1.09766 1.32619 1.16105 1.22346 1.02286 0.87395 1.04329 0.90361 0.86704 0.85448 0.76505 0.86524 0.85950 0.87526 0.87224 0.83277 0.79829 0.72177 0.92108 0.87995 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.05 10.91 21.82 0.24 -45.81 16 2 C 0.03 1.62 5.19 85.23 0.44 2.06 16 3 Si 0.99 39.67 29.59 68.60 2.03 41.70 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.49 -27.27 9.07 23.39 0.21 -27.06 16 8 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 9 C 0.00 0.09 5.59 -21.18 -0.12 -0.02 16 10 C -0.11 -6.07 8.74 22.64 0.20 -5.87 16 11 C -0.21 -9.98 7.88 22.23 0.18 -9.80 16 12 C 0.29 13.43 7.48 133.31 1.00 14.43 16 13 N -0.69 -25.21 5.83 -300.15 -1.75 -26.96 16 14 C 0.07 2.02 2.94 4.61 0.01 2.03 16 15 C -0.12 -2.14 10.05 30.64 0.31 -1.83 16 16 C -0.15 -2.82 7.16 -9.73 -0.07 -2.89 16 17 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 18 C 0.12 2.24 6.50 86.54 0.56 2.81 16 19 N -0.61 -17.74 3.32 -812.67 -2.70 -20.43 16 20 C 0.61 20.76 7.88 86.44 0.68 21.44 16 21 O -0.57 -25.38 17.13 -4.32 -0.07 -25.45 16 22 C -0.10 -2.64 6.98 24.07 0.17 -2.48 16 23 C -0.13 -2.97 10.62 22.39 0.24 -2.73 16 24 C -0.23 -3.22 10.87 22.07 0.24 -2.98 16 25 C 0.02 0.17 12.08 67.10 0.81 0.98 16 26 O -0.16 -2.83 7.80 -5.06 -0.04 -2.87 16 27 C 0.13 4.05 4.68 86.53 0.41 4.45 16 28 N -0.53 -27.31 10.37 -191.20 -1.98 -29.30 16 29 C -0.01 -0.37 10.97 85.36 0.94 0.57 16 30 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 31 H 0.12 6.51 6.20 -2.91 -0.02 6.49 16 32 H 0.13 5.46 4.62 -2.91 -0.01 5.45 16 33 H 0.40 13.44 8.95 -92.71 -0.83 12.61 16 34 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.69 5.54 -2.39 -0.01 1.68 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.26 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.06 2.64 5.71 -2.38 -0.01 2.62 16 42 H 0.10 2.86 7.93 -2.39 -0.02 2.84 16 43 H 0.14 6.78 8.06 -2.91 -0.02 6.75 16 Total: -1.00 -78.55 360.89 2.18 -76.38 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: 0.25 Total: 39.65 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.20 Total: -6.90 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -6.19 Total: -122.50 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.11 Total: -28.32 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -78.55 2.18 -76.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163627903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.275 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds