Wall clock time and date at job start Tue Mar 31 2020 22:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47198 * 120.00271 * 3 2 1 6 6 H 1.48500 * 109.47322 * 240.00013 * 3 2 1 7 7 C 1.39929 * 119.99845 * 180.27909 * 2 1 3 8 8 H 1.08001 * 120.00430 * 162.63318 * 7 2 1 9 9 C 1.41430 * 120.00003 * 342.63061 * 7 2 1 10 10 C 1.40801 * 120.62316 * 156.61647 * 9 7 2 11 11 N 1.31465 * 120.56463 * 180.02562 * 10 9 7 12 12 C 1.32021 * 122.05824 * 359.97438 * 11 10 9 13 13 C 1.39295 * 121.20700 * 0.02562 * 12 11 10 14 14 N 1.39720 * 120.36107 * 180.02562 * 13 12 11 15 15 C 1.46503 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.52996 * 119.54209 * 250.23550 * 15 14 13 17 17 C 1.52999 * 60.55705 * 248.23418 * 16 15 14 18 18 H 1.09005 * 119.53542 * 111.76327 * 17 16 15 19 19 C 1.54387 * 118.12440 * 268.45745 * 17 16 15 20 20 N 1.48144 * 104.61719 * 87.19239 * 19 17 16 21 21 C 1.34778 * 127.84177 * 140.41611 * 20 19 17 22 22 O 1.21691 * 120.00289 * 180.02562 * 21 20 19 23 23 C 1.46658 * 119.99336 * 0.02562 * 21 20 19 24 24 C 1.36553 * 125.98230 * 179.71218 * 23 21 20 25 25 C 1.40363 * 106.70441 * 179.85164 * 24 23 21 26 26 C 1.35131 * 107.11507 * 0.41489 * 25 24 23 27 27 O 1.33930 * 108.76904 * 359.74214 * 26 25 24 28 28 C 1.51837 * 104.54837 * 320.13761 * 20 19 17 29 29 C 1.38701 * 119.27620 * 359.76511 * 13 12 11 30 30 H 0.97006 * 119.99814 * 359.72668 * 1 2 3 31 31 H 1.08003 * 119.71794 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.39820 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00057 * 180.02562 * 14 13 12 34 34 H 1.09003 * 117.44059 * 355.88348 * 16 15 14 35 35 H 1.09000 * 117.44202 * 140.58668 * 16 15 14 36 36 H 1.09002 * 110.40554 * 205.97117 * 19 17 16 37 37 H 1.08997 * 110.40635 * 328.29206 * 19 17 16 38 38 H 1.08000 * 126.64651 * 359.96466 * 24 23 21 39 39 H 1.07998 * 126.44270 * 180.15886 * 25 24 23 40 40 H 1.08004 * 125.61562 * 179.71366 * 26 25 24 41 41 H 1.08996 * 110.22171 * 281.99823 * 28 20 19 42 42 H 1.09001 * 112.25599 * 158.41632 * 28 20 19 43 43 H 1.07991 * 120.93025 * 180.25979 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 0.0006 5 1 3.0961 1.6963 1.2124 6 1 3.0961 1.6964 -1.2125 7 6 2.0079 -1.2118 -0.0059 8 1 3.0510 -1.2319 -0.2852 9 6 1.3491 -2.4105 0.3539 10 6 1.8318 -3.6558 -0.0917 11 7 1.2182 -4.7693 0.2431 12 6 0.1376 -4.7731 1.0014 13 6 -0.4082 -3.5868 1.4862 14 7 -1.5523 -3.6115 2.2878 15 6 -2.1848 -4.8899 2.6224 16 6 -3.5422 -5.2427 2.0111 17 6 -3.4425 -4.9667 3.5127 18 1 -3.9088 -4.0727 3.9268 19 6 -3.1900 -6.1617 4.4570 20 7 -1.7155 -6.2985 4.5007 21 6 -0.9432 -6.5880 5.5667 22 8 0.2646 -6.6657 5.4399 23 6 -1.5586 -6.8093 6.8794 24 6 -0.8970 -7.1135 8.0346 25 6 -1.8713 -7.2332 9.0379 26 6 -3.0704 -7.0089 8.4567 27 8 -2.8779 -6.7538 7.1561 28 6 -1.2666 -6.0466 3.0723 29 6 0.1996 -2.3811 1.1688 30 1 -0.4850 0.8401 0.0040 31 1 2.7133 -3.6967 -0.7145 32 1 -0.3324 -5.7132 1.2498 33 1 -1.9281 -2.7822 2.6223 34 1 -4.0263 -4.4869 1.3925 35 1 -3.6997 -6.2752 1.6995 36 1 -3.5816 -5.9492 5.4519 37 1 -3.6457 -7.0666 4.0552 38 1 0.1693 -7.2362 8.1536 39 1 -1.6959 -7.4654 10.0780 40 1 -4.0266 -7.0320 8.9582 41 1 -1.4423 -6.9314 2.4605 42 1 -0.2205 -5.7457 3.0153 43 1 -0.1984 -1.4459 1.5337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163637738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:15 Heat of formation + Delta-G solvation = 70.715308 kcal Electronic energy + Delta-G solvation = -28545.047895 eV Core-core repulsion = 24558.513475 eV Total energy + Delta-G solvation = -3986.534420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.92643 -40.38803 -38.63216 -37.97268 -34.66618 -33.97813 -33.37332 -32.82692 -30.43289 -30.21128 -28.49201 -27.70993 -26.47264 -25.46116 -23.00493 -22.07514 -21.82589 -21.51206 -20.82438 -20.05125 -19.59847 -17.95035 -17.29079 -16.85141 -16.59429 -15.92503 -15.85843 -15.58857 -15.30005 -15.06116 -14.71237 -14.11872 -13.85167 -13.77066 -13.43214 -13.27325 -13.01399 -12.97988 -12.89517 -12.57642 -12.09780 -11.96391 -11.69960 -11.62854 -11.40578 -11.24582 -11.02206 -10.73944 -10.57055 -10.50845 -10.32954 -10.22511 -9.80144 -9.35195 -9.25793 -9.08256 -8.78336 -8.05809 -7.76830 -6.86315 -6.43323 -4.47082 0.86101 2.10357 2.32849 2.73463 2.82076 3.02533 3.05096 3.07046 3.08628 3.25283 3.47733 3.85302 3.87765 4.29927 4.41040 4.55204 4.63805 4.64603 4.69232 4.83239 5.00905 5.25967 5.30347 5.44233 5.48086 5.52259 5.62465 5.70755 5.75957 5.85670 5.91537 5.97966 6.05141 6.07571 6.16986 6.54084 6.58147 6.64560 6.88020 7.07099 7.13434 7.34674 7.53920 7.68628 7.92080 7.95308 8.16345 8.36276 8.59209 8.74940 8.84137 9.75564 10.09272 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.002688 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.615776 B =10415.234578 C =10669.106629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.048 4.048 11 N -0.443 5.443 12 C -0.101 4.101 13 C 0.174 3.826 14 N -0.712 5.712 15 C 0.111 3.889 16 C -0.148 4.148 17 C -0.185 4.185 18 H 0.123 0.877 19 C 0.129 3.871 20 N -0.620 5.620 21 C 0.619 3.381 22 O -0.513 6.513 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.223 4.223 26 C -0.015 4.015 27 O -0.162 6.162 28 C 0.133 3.867 29 C -0.206 4.206 30 H 0.281 0.719 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.396 0.604 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.345 -9.404 14.213 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.090 3.910 10 C -0.213 4.213 11 N -0.150 5.150 12 C -0.260 4.260 13 C 0.074 3.926 14 N -0.344 5.344 15 C 0.019 3.981 16 C -0.188 4.188 17 C -0.205 4.205 18 H 0.140 0.860 19 C 0.007 3.993 20 N -0.354 5.354 21 C 0.407 3.593 22 O -0.390 6.390 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.242 4.242 26 C -0.085 4.085 27 O -0.057 6.057 28 C 0.013 3.987 29 C -0.236 4.236 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.231 0.769 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.178 0.822 39 H 0.174 0.826 40 H 0.226 0.774 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.727 -10.219 13.700 20.728 hybrid contribution -0.379 2.099 0.728 2.254 sum -12.107 -8.119 14.428 20.510 Atomic orbital electron populations 1.69825 1.07662 1.29338 1.34473 1.25953 0.94760 1.01471 0.92058 0.86331 0.80150 0.79934 0.80144 1.20369 1.18747 1.18808 1.19532 0.98070 0.90824 1.39531 0.89942 1.18264 0.90993 0.93447 0.88254 1.22359 1.03489 0.88065 1.07385 1.66853 1.06813 1.31891 1.09483 1.21474 0.99927 0.94584 1.09969 1.18618 0.86676 0.95779 0.91519 1.43468 1.29815 1.03936 1.57183 1.21340 0.86341 0.88429 1.01949 1.23613 0.99327 1.03202 0.92698 1.24017 1.03474 1.00822 0.92215 0.85952 1.21956 0.80091 0.96903 1.00372 1.50068 1.07678 1.68767 1.08864 1.16146 0.85402 0.77389 0.80369 1.90937 1.12414 1.52392 1.83278 1.22115 0.80988 1.12438 0.96420 1.22000 1.01506 1.00242 0.90672 1.21856 0.92169 1.08943 1.01263 1.24439 1.00722 1.02057 0.81264 1.84148 1.25878 1.68695 1.27012 1.23088 1.01185 0.95740 0.78703 1.21064 1.01603 0.94930 1.05981 0.90822 0.85863 0.86191 0.76939 0.87423 0.88310 0.88779 0.90279 0.82173 0.82642 0.77443 0.89262 0.86501 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.78 10.91 55.55 0.61 -19.17 16 2 C 0.08 1.87 5.18 -17.35 -0.09 1.78 16 3 Si 0.91 18.32 29.59 -169.99 -5.03 13.29 16 4 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.45 -11.74 9.09 -37.73 -0.34 -12.09 16 8 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 9 C 0.10 2.56 5.59 -106.69 -0.60 1.97 16 10 C -0.05 -1.25 10.97 -16.74 -0.18 -1.44 16 11 N -0.44 -11.27 10.33 -12.37 -0.13 -11.40 16 12 C -0.10 -2.36 9.16 -17.08 -0.16 -2.52 16 13 C 0.17 4.00 6.49 -83.70 -0.54 3.45 16 14 N -0.71 -13.11 5.85 -44.64 -0.26 -13.38 16 15 C 0.11 1.65 2.89 -130.42 -0.38 1.28 16 16 C -0.15 -1.73 10.04 -26.73 -0.27 -2.00 16 17 C -0.19 -2.08 7.13 -89.22 -0.64 -2.72 16 18 H 0.12 1.27 8.14 -51.93 -0.42 0.84 16 19 C 0.13 1.38 6.52 -2.41 -0.02 1.36 16 20 N -0.62 -8.82 3.39 -167.69 -0.57 -9.39 16 21 C 0.62 9.80 7.89 -12.86 -0.10 9.70 16 22 O -0.51 -10.01 17.24 5.20 0.09 -9.92 16 23 C -0.07 -0.87 6.97 -36.79 -0.26 -1.13 16 24 C -0.12 -1.40 10.62 -39.39 -0.42 -1.82 16 25 C -0.22 -1.83 10.87 -39.89 -0.43 -2.27 16 26 C -0.02 -0.11 12.08 29.63 0.36 0.25 16 27 O -0.16 -1.66 7.80 5.01 0.04 -1.62 16 28 C 0.13 2.08 4.95 -0.29 0.00 2.08 16 29 C -0.21 -5.27 8.67 -38.39 -0.33 -5.60 16 30 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 31 H 0.12 2.98 8.06 -52.48 -0.42 2.56 16 32 H 0.12 2.50 4.74 -52.49 -0.25 2.25 16 33 H 0.40 6.89 8.85 -40.82 -0.36 6.53 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.92 5.55 -51.93 -0.29 0.63 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.21 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.09 1.22 7.96 -51.93 -0.41 0.81 16 42 H 0.12 2.26 5.92 -51.93 -0.31 1.96 16 43 H 0.13 3.26 6.19 -52.49 -0.32 2.94 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -31.70 361.75 -9.07 -40.77 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -4.87 Total: 15.07 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.40 Total: -9.71 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.35 Total: -53.34 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.13 Total: -11.53 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.70 -9.07 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163637738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.488 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds