Wall clock time and date at job start Tue Mar 31 2020 22:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00093 * 2 1 4 4 H 1.48499 * 109.47066 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47198 * 120.00271 * 3 2 1 6 6 H 1.48500 * 109.47322 * 240.00013 * 3 2 1 7 7 C 1.39929 * 119.99845 * 180.27909 * 2 1 3 8 8 H 1.08001 * 120.00430 * 162.63318 * 7 2 1 9 9 C 1.41430 * 120.00003 * 342.63061 * 7 2 1 10 10 C 1.40801 * 120.62316 * 156.61647 * 9 7 2 11 11 N 1.31465 * 120.56463 * 180.02562 * 10 9 7 12 12 C 1.32021 * 122.05824 * 359.97438 * 11 10 9 13 13 C 1.39295 * 121.20700 * 0.02562 * 12 11 10 14 14 N 1.39720 * 120.36107 * 180.02562 * 13 12 11 15 15 C 1.46503 * 119.99824 * 359.97438 * 14 13 12 16 16 C 1.52996 * 119.54209 * 250.23550 * 15 14 13 17 17 C 1.52999 * 60.55705 * 248.23418 * 16 15 14 18 18 H 1.09005 * 119.53542 * 111.76327 * 17 16 15 19 19 C 1.54387 * 118.12440 * 268.45745 * 17 16 15 20 20 N 1.48144 * 104.61719 * 87.19239 * 19 17 16 21 21 C 1.34778 * 127.84177 * 140.41611 * 20 19 17 22 22 O 1.21691 * 120.00289 * 180.02562 * 21 20 19 23 23 C 1.46658 * 119.99336 * 0.02562 * 21 20 19 24 24 C 1.36553 * 125.98230 * 179.71218 * 23 21 20 25 25 C 1.40363 * 106.70441 * 179.85164 * 24 23 21 26 26 C 1.35131 * 107.11507 * 0.41489 * 25 24 23 27 27 O 1.33930 * 108.76904 * 359.74214 * 26 25 24 28 28 C 1.51837 * 104.54837 * 320.13761 * 20 19 17 29 29 C 1.38701 * 119.27620 * 359.76511 * 13 12 11 30 30 H 0.97006 * 119.99814 * 359.72668 * 1 2 3 31 31 H 1.08003 * 119.71794 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.39820 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00057 * 180.02562 * 14 13 12 34 34 H 1.09003 * 117.44059 * 355.88348 * 16 15 14 35 35 H 1.09000 * 117.44202 * 140.58668 * 16 15 14 36 36 H 1.09002 * 110.40554 * 205.97117 * 19 17 16 37 37 H 1.08997 * 110.40635 * 328.29206 * 19 17 16 38 38 H 1.08000 * 126.64651 * 359.96466 * 24 23 21 39 39 H 1.07998 * 126.44270 * 180.15886 * 25 24 23 40 40 H 1.08004 * 125.61562 * 179.71366 * 26 25 24 41 41 H 1.08996 * 110.22171 * 281.99823 * 28 20 19 42 42 H 1.09001 * 112.25599 * 158.41632 * 28 20 19 43 43 H 1.07991 * 120.93025 * 180.25979 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 0.0006 5 1 3.0961 1.6963 1.2124 6 1 3.0961 1.6964 -1.2125 7 6 2.0079 -1.2118 -0.0059 8 1 3.0510 -1.2319 -0.2852 9 6 1.3491 -2.4105 0.3539 10 6 1.8318 -3.6558 -0.0917 11 7 1.2182 -4.7693 0.2431 12 6 0.1376 -4.7731 1.0014 13 6 -0.4082 -3.5868 1.4862 14 7 -1.5523 -3.6115 2.2878 15 6 -2.1848 -4.8899 2.6224 16 6 -3.5422 -5.2427 2.0111 17 6 -3.4425 -4.9667 3.5127 18 1 -3.9088 -4.0727 3.9268 19 6 -3.1900 -6.1617 4.4570 20 7 -1.7155 -6.2985 4.5007 21 6 -0.9432 -6.5880 5.5667 22 8 0.2646 -6.6657 5.4399 23 6 -1.5586 -6.8093 6.8794 24 6 -0.8970 -7.1135 8.0346 25 6 -1.8713 -7.2332 9.0379 26 6 -3.0704 -7.0089 8.4567 27 8 -2.8779 -6.7538 7.1561 28 6 -1.2666 -6.0466 3.0723 29 6 0.1996 -2.3811 1.1688 30 1 -0.4850 0.8401 0.0040 31 1 2.7133 -3.6967 -0.7145 32 1 -0.3324 -5.7132 1.2498 33 1 -1.9281 -2.7822 2.6223 34 1 -4.0263 -4.4869 1.3925 35 1 -3.6997 -6.2752 1.6995 36 1 -3.5816 -5.9492 5.4519 37 1 -3.6457 -7.0666 4.0552 38 1 0.1693 -7.2362 8.1536 39 1 -1.6959 -7.4654 10.0780 40 1 -4.0266 -7.0320 8.9582 41 1 -1.4423 -6.9314 2.4605 42 1 -0.2205 -5.7457 3.0153 43 1 -0.1984 -1.4459 1.5337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163637738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:14 Heat of formation + Delta-G solvation = 49.618291 kcal Electronic energy + Delta-G solvation = -28545.962730 eV Core-core repulsion = 24558.513475 eV Total energy + Delta-G solvation = -3987.449255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.67950 -41.54645 -40.18698 -39.44720 -36.17464 -35.75025 -34.37151 -33.94985 -32.26118 -31.16241 -29.88236 -29.17802 -27.58395 -27.25693 -24.10158 -23.54742 -23.05953 -22.72293 -22.03044 -20.99178 -20.94128 -19.21977 -18.83286 -17.94341 -17.52325 -17.45845 -17.30887 -16.81465 -16.61492 -16.47556 -16.21797 -15.66174 -15.07218 -14.87561 -14.68076 -14.48522 -14.34682 -13.99268 -13.91996 -13.64261 -13.53945 -13.41721 -13.24832 -13.14013 -12.98128 -12.68455 -12.63464 -12.22120 -12.09768 -11.87739 -11.65560 -11.22257 -11.17650 -11.07706 -10.66824 -10.11925 -10.01701 -9.73512 -9.62722 -8.71551 -8.13213 -6.45556 -0.01643 0.91002 1.17034 1.35797 1.37960 1.41835 1.48923 1.55462 1.92818 2.01775 2.18531 2.40370 2.50888 2.75774 3.33050 3.44944 3.57714 3.76567 3.83121 3.92813 3.99451 4.09954 4.20409 4.32245 4.33907 4.51678 4.61463 4.63565 4.68324 4.75509 4.81538 4.86499 4.91060 4.94266 4.95064 5.05829 5.12986 5.16517 5.26961 5.39476 5.67133 5.81962 5.85372 5.97926 6.27042 6.31958 6.68926 6.75329 6.78903 6.80412 6.99573 7.79548 8.25728 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015642 B = 0.002688 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.615776 B =10415.234578 C =10669.106629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.071 3.929 10 C -0.079 4.079 11 N -0.455 5.455 12 C -0.106 4.106 13 C 0.188 3.812 14 N -0.706 5.706 15 C 0.064 3.936 16 C -0.125 4.125 17 C -0.152 4.152 18 H 0.138 0.862 19 C 0.129 3.871 20 N -0.619 5.619 21 C 0.610 3.390 22 O -0.572 6.572 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.234 4.234 26 C 0.014 3.986 27 O -0.163 6.163 28 C 0.132 3.868 29 C -0.233 4.233 30 H 0.290 0.710 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.399 0.601 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.184 0.816 40 H 0.261 0.739 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 -9.538 16.235 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.512 4.512 8 H 0.101 0.899 9 C 0.066 3.934 10 C -0.243 4.243 11 N -0.162 5.162 12 C -0.266 4.266 13 C 0.085 3.915 14 N -0.336 5.336 15 C -0.026 4.026 16 C -0.164 4.164 17 C -0.172 4.172 18 H 0.156 0.844 19 C 0.008 3.992 20 N -0.352 5.352 21 C 0.401 3.599 22 O -0.453 6.453 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.252 4.252 26 C -0.055 4.055 27 O -0.058 6.058 28 C 0.011 3.989 29 C -0.264 4.264 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.235 0.765 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.169 0.831 39 H 0.201 0.799 40 H 0.276 0.724 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.357 -10.374 15.725 24.305 hybrid contribution 0.543 2.021 0.279 2.111 sum -14.814 -8.354 16.004 23.353 Atomic orbital electron populations 1.69866 1.08995 1.30808 1.34042 1.26809 0.95578 1.04552 0.90955 0.85198 0.78803 0.75299 0.80117 1.18915 1.18739 1.18114 1.19805 0.98418 0.91870 1.41146 0.89903 1.18596 0.91846 0.94114 0.88852 1.22460 1.04540 0.88296 1.08968 1.66838 1.07526 1.31845 1.10009 1.21917 0.99502 0.95880 1.09311 1.18607 0.87461 0.94682 0.90750 1.43468 1.28462 1.05903 1.55762 1.21605 0.87583 0.86839 1.06604 1.23691 0.95057 1.04687 0.93007 1.24187 0.99439 1.01359 0.92202 0.84439 1.22244 0.77807 0.97829 1.01304 1.50150 1.09214 1.67912 1.07907 1.16602 0.85033 0.76645 0.81655 1.90887 1.14820 1.55181 1.84443 1.21519 0.82406 1.16226 0.95299 1.22253 1.01954 0.99179 0.91519 1.22200 0.91584 1.09390 1.02047 1.25498 1.02339 0.97878 0.79763 1.84113 1.24183 1.68871 1.28664 1.22910 0.98943 0.96850 0.80246 1.21039 1.02443 0.95501 1.07394 0.89895 0.85398 0.83763 0.76541 0.87177 0.85859 0.87277 0.87509 0.83083 0.79859 0.72354 0.87394 0.91137 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.57 10.91 21.82 0.24 -41.33 16 2 C 0.04 1.88 5.18 85.25 0.44 2.32 16 3 Si 0.99 37.81 29.59 68.60 2.03 39.84 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.48 -26.36 9.09 23.47 0.21 -26.14 16 8 H 0.08 4.33 7.90 -2.91 -0.02 4.30 16 9 C 0.07 4.02 5.59 -21.21 -0.12 3.90 16 10 C -0.08 -4.35 10.97 85.37 0.94 -3.41 16 11 N -0.45 -24.20 10.33 -193.05 -1.99 -26.19 16 12 C -0.11 -5.16 9.16 84.92 0.78 -4.38 16 13 C 0.19 8.94 6.49 38.25 0.25 9.19 16 14 N -0.71 -26.17 5.85 -295.15 -1.73 -27.90 16 15 C 0.06 1.82 2.89 4.51 0.01 1.83 16 16 C -0.12 -2.50 10.04 30.59 0.31 -2.19 16 17 C -0.15 -2.92 7.13 -9.89 -0.07 -2.99 16 18 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 19 C 0.13 2.33 6.52 86.53 0.56 2.89 16 20 N -0.62 -17.29 3.39 -802.65 -2.72 -20.01 16 21 C 0.61 19.91 7.89 86.44 0.68 20.59 16 22 O -0.57 -23.98 17.24 -4.32 -0.07 -24.05 16 23 C -0.10 -2.58 6.97 24.08 0.17 -2.41 16 24 C -0.13 -2.83 10.62 22.39 0.24 -2.59 16 25 C -0.23 -3.11 10.87 22.07 0.24 -2.87 16 26 C 0.01 0.14 12.08 67.10 0.81 0.95 16 27 O -0.16 -2.82 7.80 -4.98 -0.04 -2.86 16 28 C 0.13 4.12 4.95 85.79 0.42 4.54 16 29 C -0.23 -12.52 8.67 23.04 0.20 -12.32 16 30 H 0.29 13.33 8.30 -92.70 -0.77 12.56 16 31 H 0.13 6.62 8.06 -2.91 -0.02 6.60 16 32 H 0.15 6.15 4.74 -2.91 -0.01 6.13 16 33 H 0.40 13.96 8.85 -92.71 -0.82 13.14 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.11 1.71 5.55 -2.39 -0.01 1.69 16 37 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 39 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.26 -0.30 8.06 -2.91 -0.02 -0.32 16 41 H 0.11 2.87 7.96 -2.39 -0.02 2.85 16 42 H 0.07 2.89 5.92 -2.39 -0.01 2.87 16 43 H 0.12 6.29 6.19 -2.92 -0.02 6.27 16 Total: -1.00 -75.93 361.75 2.05 -73.88 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.26 Total: 41.69 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 6.08 Total: -13.08 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -6.20 Total: -115.42 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.11 Total: -26.91 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -75.93 2.05 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163637738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.500 kcal (2) G-P(sol) polarization free energy of solvation -75.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds