Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48507 * 109.46493 * 274.98342 * 3 2 1 5 5 H 1.48500 * 109.46864 * 34.97732 * 3 2 1 6 6 H 1.48494 * 109.47223 * 154.98103 * 3 2 1 7 7 C 1.40031 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99679 * 186.29695 * 7 2 1 9 9 C 1.41314 * 119.99918 * 6.30155 * 7 2 1 10 10 C 1.40586 * 119.78552 * 173.69133 * 9 7 2 11 11 C 1.38351 * 119.14972 * 180.24865 * 10 9 7 12 12 C 1.38633 * 118.67846 * 359.48688 * 11 10 9 13 13 C 1.39760 * 119.49024 * 0.55596 * 12 11 10 14 14 N 1.38832 * 119.58513 * 179.70840 * 13 12 11 15 15 C 1.46499 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.53001 * 119.54036 * 250.23209 * 15 14 13 17 17 C 1.53004 * 60.55761 * 248.23394 * 16 15 14 18 18 H 1.08997 * 119.53941 * 111.76478 * 17 16 15 19 19 C 1.54384 * 118.12305 * 268.45670 * 17 16 15 20 20 N 1.48144 * 104.61810 * 87.18780 * 19 17 16 21 21 C 1.34776 * 127.83731 * 140.41621 * 20 19 17 22 22 O 1.21695 * 120.00397 * 180.02562 * 21 20 19 23 23 C 1.46663 * 120.00104 * 0.02562 * 21 20 19 24 24 C 1.36537 * 125.98940 * 179.71289 * 23 21 20 25 25 C 1.40365 * 106.70809 * 179.91032 * 24 23 21 26 26 C 1.35133 * 107.11455 * 0.35852 * 25 24 23 27 27 O 1.33925 * 108.76466 * 359.77690 * 26 25 24 28 28 C 1.51828 * 104.55312 * 320.14113 * 20 19 17 29 29 N 1.31982 * 120.83467 * 359.68374 * 13 12 11 30 30 H 0.96999 * 119.99953 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.42545 * 359.97438 * 10 9 7 32 32 H 1.07996 * 120.66162 * 179.72521 * 11 10 9 33 33 H 1.07998 * 120.25899 * 180.25954 * 12 11 10 34 34 H 0.96998 * 120.00155 * 179.97438 * 14 13 12 35 35 H 1.09000 * 117.44070 * 355.88210 * 16 15 14 36 36 H 1.08995 * 117.44588 * 140.58659 * 16 15 14 37 37 H 1.09002 * 110.41129 * 205.97806 * 19 17 16 38 38 H 1.09010 * 110.40647 * 328.40415 * 19 17 16 39 39 H 1.08004 * 126.64775 * 0.05111 * 24 23 21 40 40 H 1.07997 * 126.44107 * 180.10947 * 25 24 23 41 41 H 1.07990 * 125.61120 * 179.77266 * 26 25 24 42 42 H 1.08999 * 110.21743 * 281.99866 * 28 20 19 43 43 H 1.08996 * 112.26154 * 158.40883 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1071 -1.3949 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2154 0.1031 9 6 1.3074 -2.4329 -0.1332 10 6 2.0212 -3.6368 -0.2658 11 6 1.3224 -4.8231 -0.4011 12 6 -0.0633 -4.7840 -0.3905 13 6 -0.7158 -3.5554 -0.2561 14 7 -2.1035 -3.5133 -0.2513 15 6 -2.8743 -4.7516 -0.3870 16 6 -3.6543 -5.0172 -1.6762 17 6 -4.4172 -4.7547 -0.3762 18 1 -4.9929 -3.8356 -0.2672 19 6 -4.8073 -5.9672 0.4962 20 7 -3.6307 -6.1952 1.3671 21 6 -3.6209 -6.5366 2.6708 22 8 -2.5627 -6.6883 3.2522 23 6 -4.8857 -6.7254 3.3889 24 6 -5.0183 -7.0752 4.7021 25 6 -6.3955 -7.1403 4.9653 26 6 -7.0351 -6.8392 3.8136 27 8 -6.1221 -6.5898 2.8662 28 6 -2.4347 -5.9649 0.4605 29 7 -0.0295 -2.4348 -0.1333 30 1 -0.4850 0.8400 -0.0004 31 1 3.1013 -3.6350 -0.2665 32 1 1.8461 -5.7615 -0.5091 33 1 -0.6342 -5.6953 -0.4900 34 1 -2.5626 -2.6639 -0.1580 35 1 -3.6611 -4.2302 -2.4303 36 1 -3.6550 -6.0366 -2.0620 37 1 -5.6863 -5.7357 1.0977 38 1 -4.9927 -6.8411 -0.1286 39 1 -4.2185 -7.2629 5.4032 40 1 -6.8571 -7.3887 5.9095 41 1 -8.1062 -6.8053 3.6795 42 1 -2.2718 -6.8344 -0.1762 43 1 -1.5307 -5.7289 1.0217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163638582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = 85.906931 kcal Electronic energy + Delta-G solvation = -28658.974047 eV Core-core repulsion = 24673.098386 eV Total energy + Delta-G solvation = -3985.875662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89468 -40.34323 -38.56014 -37.83661 -34.57152 -33.61629 -33.21174 -32.39602 -30.55046 -30.19044 -28.66516 -27.90385 -26.51736 -25.29289 -22.94881 -22.00932 -21.71943 -21.33268 -20.81917 -20.00963 -19.45399 -17.92214 -17.30185 -16.77564 -16.55755 -16.17455 -15.78634 -15.54142 -15.19567 -14.73042 -14.40235 -13.91619 -13.75951 -13.65334 -13.37393 -13.24150 -12.96616 -12.90393 -12.82066 -12.59201 -12.01829 -11.92883 -11.88180 -11.65523 -11.25564 -10.97714 -10.75106 -10.61226 -10.44928 -10.34922 -10.29698 -10.07922 -9.82664 -9.40857 -9.05260 -8.83867 -8.73276 -7.91707 -7.52779 -6.55367 -6.34659 -4.46715 0.89449 2.13381 2.36620 2.84164 2.87323 3.10870 3.11639 3.15461 3.20106 3.27783 3.53338 3.87579 3.99019 4.33543 4.45223 4.60074 4.67918 4.71918 4.81818 4.88519 5.06606 5.29864 5.33922 5.47293 5.50899 5.55066 5.65776 5.74057 5.89467 5.96481 6.00534 6.05472 6.08471 6.13829 6.19031 6.55965 6.62555 6.82535 6.89630 6.92990 7.23607 7.38949 7.57937 7.79739 7.90509 7.95926 8.14412 8.33203 8.61689 8.79365 9.09492 10.22275 10.38938 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.002771 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.835010 B =10104.008685 C =10351.959872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.293 3.707 10 C -0.313 4.313 11 C -0.031 4.031 12 C -0.370 4.370 13 C 0.413 3.587 14 N -0.697 5.697 15 C 0.118 3.882 16 C -0.148 4.148 17 C -0.184 4.184 18 H 0.124 0.876 19 C 0.129 3.871 20 N -0.620 5.620 21 C 0.619 3.381 22 O -0.514 6.514 23 C -0.067 4.067 24 C -0.124 4.124 25 C -0.223 4.223 26 C -0.015 4.015 27 O -0.162 6.162 28 C 0.135 3.865 29 N -0.530 5.530 30 H 0.269 0.731 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.400 0.600 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.209 0.791 42 H 0.087 0.913 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 -11.224 2.217 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.166 3.834 10 C -0.336 4.336 11 C -0.055 4.055 12 C -0.395 4.395 13 C 0.174 3.826 14 N -0.331 5.331 15 C 0.026 3.974 16 C -0.188 4.188 17 C -0.204 4.204 18 H 0.142 0.858 19 C 0.007 3.993 20 N -0.354 5.354 21 C 0.407 3.593 22 O -0.391 6.391 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.242 4.242 26 C -0.085 4.085 27 O -0.057 6.057 28 C 0.015 3.985 29 N -0.251 5.251 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.225 0.775 42 H 0.105 0.895 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.704 -10.480 2.437 19.870 hybrid contribution 0.350 0.328 0.115 0.493 sum -16.355 -10.151 2.552 19.418 Atomic orbital electron populations 1.70151 1.07186 1.27335 1.29139 1.26054 0.94848 1.00961 0.93506 0.86352 0.80625 0.81092 0.78938 1.19576 1.20256 1.18531 1.19592 0.94609 0.89503 1.42860 0.89802 1.18189 0.86696 0.91857 0.86661 1.21554 0.98508 0.93814 1.19725 1.20614 0.93442 0.96398 0.95070 1.20825 0.94668 0.96049 1.28009 1.18396 0.83570 0.90511 0.90113 1.43236 1.02578 1.05245 1.82063 1.21233 0.88989 0.88579 0.98635 1.23612 1.00666 1.03337 0.91226 1.24034 0.95156 1.00573 1.00680 0.85823 1.21964 0.88909 0.96349 0.92083 1.50092 1.09287 1.67599 1.08453 1.16142 0.85820 0.77464 0.79851 1.90930 1.29548 1.52228 1.66444 1.22121 0.83426 1.11923 0.94432 1.21992 0.97531 1.00310 0.94634 1.21853 0.93457 1.08759 1.00181 1.24431 0.95023 1.01950 0.87085 1.84149 1.14744 1.68266 1.38556 1.23132 0.89277 0.95036 0.91101 1.68164 1.07997 1.24118 1.24804 0.91975 0.88621 0.88792 0.88404 0.76358 0.87423 0.88379 0.88762 0.90326 0.82194 0.82660 0.77454 0.89473 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.16 11.49 55.55 0.64 -18.53 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 3 Si 0.91 18.93 29.56 -169.99 -5.03 13.91 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.43 -11.86 9.13 -37.74 -0.34 -12.21 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.29 8.22 6.54 -85.00 -0.56 7.66 16 10 C -0.31 -7.99 9.83 -38.65 -0.38 -8.37 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.37 -8.43 7.99 -38.87 -0.31 -8.74 16 13 C 0.41 10.06 7.48 -155.31 -1.16 8.89 16 14 N -0.70 -13.99 5.84 -46.41 -0.27 -14.26 16 15 C 0.12 1.84 2.86 -130.41 -0.37 1.46 16 16 C -0.15 -1.78 10.04 -26.73 -0.27 -2.05 16 17 C -0.18 -2.18 7.13 -89.22 -0.64 -2.82 16 18 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 19 C 0.13 1.43 6.51 -2.41 -0.02 1.41 16 20 N -0.62 -9.07 3.39 -167.69 -0.57 -9.64 16 21 C 0.62 10.04 7.89 -12.86 -0.10 9.94 16 22 O -0.51 -10.18 17.24 5.19 0.09 -10.09 16 23 C -0.07 -0.89 6.97 -36.80 -0.26 -1.14 16 24 C -0.12 -1.44 10.62 -39.40 -0.42 -1.86 16 25 C -0.22 -1.91 10.87 -39.89 -0.43 -2.34 16 26 C -0.02 -0.12 12.08 29.63 0.36 0.24 16 27 O -0.16 -1.71 7.80 5.01 0.04 -1.67 16 28 C 0.13 2.14 4.93 -0.29 0.00 2.14 16 29 N -0.53 -14.71 7.92 -10.33 -0.08 -14.79 16 30 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 31 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.10 1.95 4.69 -52.49 -0.25 1.70 16 34 H 0.40 8.09 8.95 -40.82 -0.37 7.73 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.96 5.55 -51.93 -0.29 0.67 16 38 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 39 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.12 2.33 5.89 -51.93 -0.31 2.03 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -33.19 363.09 -10.07 -43.26 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -4.97 Total: 13.49 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -5.40 Total: -7.16 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.28 Total: -57.21 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.13 Total: -11.76 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.19 -10.07 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163638582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.168 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds