Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48507 * 109.46493 * 274.98342 * 3 2 1 5 5 H 1.48500 * 109.46864 * 34.97732 * 3 2 1 6 6 H 1.48494 * 109.47223 * 154.98103 * 3 2 1 7 7 C 1.40031 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99679 * 186.29695 * 7 2 1 9 9 C 1.41314 * 119.99918 * 6.30155 * 7 2 1 10 10 C 1.40586 * 119.78552 * 173.69133 * 9 7 2 11 11 C 1.38351 * 119.14972 * 180.24865 * 10 9 7 12 12 C 1.38633 * 118.67846 * 359.48688 * 11 10 9 13 13 C 1.39760 * 119.49024 * 0.55596 * 12 11 10 14 14 N 1.38832 * 119.58513 * 179.70840 * 13 12 11 15 15 C 1.46499 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.53001 * 119.54036 * 250.23209 * 15 14 13 17 17 C 1.53004 * 60.55761 * 248.23394 * 16 15 14 18 18 H 1.08997 * 119.53941 * 111.76478 * 17 16 15 19 19 C 1.54384 * 118.12305 * 268.45670 * 17 16 15 20 20 N 1.48144 * 104.61810 * 87.18780 * 19 17 16 21 21 C 1.34776 * 127.83731 * 140.41621 * 20 19 17 22 22 O 1.21695 * 120.00397 * 180.02562 * 21 20 19 23 23 C 1.46663 * 120.00104 * 0.02562 * 21 20 19 24 24 C 1.36537 * 125.98940 * 179.71289 * 23 21 20 25 25 C 1.40365 * 106.70809 * 179.91032 * 24 23 21 26 26 C 1.35133 * 107.11455 * 0.35852 * 25 24 23 27 27 O 1.33925 * 108.76466 * 359.77690 * 26 25 24 28 28 C 1.51828 * 104.55312 * 320.14113 * 20 19 17 29 29 N 1.31982 * 120.83467 * 359.68374 * 13 12 11 30 30 H 0.96999 * 119.99953 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.42545 * 359.97438 * 10 9 7 32 32 H 1.07996 * 120.66162 * 179.72521 * 11 10 9 33 33 H 1.07998 * 120.25899 * 180.25954 * 12 11 10 34 34 H 0.96998 * 120.00155 * 179.97438 * 14 13 12 35 35 H 1.09000 * 117.44070 * 355.88210 * 16 15 14 36 36 H 1.08995 * 117.44588 * 140.58659 * 16 15 14 37 37 H 1.09002 * 110.41129 * 205.97806 * 19 17 16 38 38 H 1.09010 * 110.40647 * 328.40415 * 19 17 16 39 39 H 1.08004 * 126.64775 * 0.05111 * 24 23 21 40 40 H 1.07997 * 126.44107 * 180.10947 * 25 24 23 41 41 H 1.07990 * 125.61120 * 179.77266 * 26 25 24 42 42 H 1.08999 * 110.21743 * 281.99866 * 28 20 19 43 43 H 1.08996 * 112.26154 * 158.40883 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3836 2.1071 -1.3949 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2127 0.0005 8 1 3.0827 -1.2154 0.1031 9 6 1.3074 -2.4329 -0.1332 10 6 2.0212 -3.6368 -0.2658 11 6 1.3224 -4.8231 -0.4011 12 6 -0.0633 -4.7840 -0.3905 13 6 -0.7158 -3.5554 -0.2561 14 7 -2.1035 -3.5133 -0.2513 15 6 -2.8743 -4.7516 -0.3870 16 6 -3.6543 -5.0172 -1.6762 17 6 -4.4172 -4.7547 -0.3762 18 1 -4.9929 -3.8356 -0.2672 19 6 -4.8073 -5.9672 0.4962 20 7 -3.6307 -6.1952 1.3671 21 6 -3.6209 -6.5366 2.6708 22 8 -2.5627 -6.6883 3.2522 23 6 -4.8857 -6.7254 3.3889 24 6 -5.0183 -7.0752 4.7021 25 6 -6.3955 -7.1403 4.9653 26 6 -7.0351 -6.8392 3.8136 27 8 -6.1221 -6.5898 2.8662 28 6 -2.4347 -5.9649 0.4605 29 7 -0.0295 -2.4348 -0.1333 30 1 -0.4850 0.8400 -0.0004 31 1 3.1013 -3.6350 -0.2665 32 1 1.8461 -5.7615 -0.5091 33 1 -0.6342 -5.6953 -0.4900 34 1 -2.5626 -2.6639 -0.1580 35 1 -3.6611 -4.2302 -2.4303 36 1 -3.6550 -6.0366 -2.0620 37 1 -5.6863 -5.7357 1.0977 38 1 -4.9927 -6.8411 -0.1286 39 1 -4.2185 -7.2629 5.4032 40 1 -6.8571 -7.3887 5.9095 41 1 -8.1062 -6.8053 3.6795 42 1 -2.2718 -6.8344 -0.1762 43 1 -1.5307 -5.7289 1.0217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163638582.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = 64.430331 kcal Electronic energy + Delta-G solvation = -28659.905343 eV Core-core repulsion = 24673.098386 eV Total energy + Delta-G solvation = -3986.806957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.67597 -41.52221 -40.07290 -39.38555 -36.11183 -35.19187 -34.15646 -33.83426 -32.36937 -31.13963 -30.40527 -29.16007 -27.67421 -27.06947 -23.96605 -23.38544 -23.02897 -22.70825 -22.01161 -20.98027 -20.84976 -19.32941 -18.74892 -17.94728 -17.82035 -17.44591 -16.94608 -16.72650 -16.47575 -16.28337 -16.05486 -15.47333 -15.04799 -14.87232 -14.64238 -14.44698 -14.34390 -13.99407 -13.87845 -13.73237 -13.62247 -13.30176 -13.18577 -12.89435 -12.72148 -12.62987 -12.56369 -12.22743 -11.90855 -11.75524 -11.64402 -11.29092 -11.07445 -11.07405 -10.46035 -10.10904 -9.84084 -9.62180 -9.47914 -8.31002 -8.26368 -6.48922 -0.01071 1.02931 1.31459 1.36928 1.39352 1.42673 1.53676 1.55846 1.93404 2.02627 2.23460 2.39639 2.49832 2.90158 3.34357 3.45839 3.58967 3.83565 3.93070 3.94893 4.07109 4.11057 4.28063 4.30568 4.42124 4.52069 4.65703 4.66230 4.75420 4.79157 4.83716 4.90966 4.94613 4.97183 4.98746 5.07528 5.11948 5.16011 5.33672 5.39889 5.69527 5.84065 5.94902 6.04916 6.19131 6.29802 6.52552 6.78333 6.79750 6.89486 7.16885 8.30504 8.48661 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.002771 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.835010 B =10104.008685 C =10351.959872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.343 4.343 11 C -0.033 4.033 12 C -0.364 4.364 13 C 0.399 3.601 14 N -0.695 5.695 15 C 0.070 3.930 16 C -0.121 4.121 17 C -0.156 4.156 18 H 0.133 0.867 19 C 0.131 3.869 20 N -0.621 5.621 21 C 0.610 3.390 22 O -0.572 6.572 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.234 4.234 26 C 0.014 3.986 27 O -0.163 6.163 28 C 0.135 3.865 29 N -0.565 5.565 30 H 0.276 0.724 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.395 0.605 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.184 0.816 41 H 0.261 0.739 42 H 0.113 0.887 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 -12.188 1.517 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.366 4.366 11 C -0.057 4.057 12 C -0.390 4.390 13 C 0.159 3.841 14 N -0.328 5.328 15 C -0.021 4.021 16 C -0.160 4.160 17 C -0.176 4.176 18 H 0.151 0.849 19 C 0.010 3.990 20 N -0.353 5.353 21 C 0.400 3.600 22 O -0.454 6.454 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.252 4.252 26 C -0.055 4.055 27 O -0.059 6.059 28 C 0.014 3.986 29 N -0.287 5.287 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.230 0.770 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.169 0.831 40 H 0.202 0.798 41 H 0.276 0.724 42 H 0.130 0.870 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.225 -11.486 1.700 23.321 hybrid contribution 1.182 0.465 0.397 1.331 sum -19.043 -11.021 2.098 22.102 Atomic orbital electron populations 1.70250 1.08799 1.28653 1.29789 1.26976 0.95758 1.04402 0.92474 0.85132 0.79057 0.75829 0.79233 1.18742 1.19302 1.18061 1.19925 0.94991 0.90660 1.44849 0.89622 1.18671 0.87540 0.93170 0.87457 1.21701 0.99015 0.94198 1.21659 1.21040 0.93901 0.97085 0.93660 1.21194 0.94867 0.96770 1.26150 1.18836 0.85382 0.90421 0.89488 1.43329 1.01247 1.06873 1.81336 1.21575 0.91142 0.87014 1.02339 1.23681 0.97233 1.05027 0.90077 1.24200 0.91885 1.01252 1.00257 0.84904 1.22241 0.87824 0.97121 0.91838 1.50179 1.10071 1.66766 1.08304 1.16597 0.86441 0.76761 0.80153 1.90878 1.31806 1.54985 1.67694 1.21543 0.83508 1.15686 0.94735 1.22249 0.99330 0.99234 0.94138 1.22201 0.91752 1.09218 1.02052 1.25494 0.96391 0.97855 0.85788 1.84115 1.14032 1.68428 1.39277 1.22962 0.88446 0.96208 0.90989 1.68138 1.08269 1.26002 1.26330 0.91378 0.87984 0.85345 0.85479 0.77027 0.87439 0.85407 0.87450 0.87200 0.83069 0.79841 0.72363 0.86966 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.89 11.49 21.84 0.25 -41.64 16 2 C 0.03 1.36 5.49 85.29 0.47 1.83 16 3 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.47 -27.17 9.13 23.46 0.21 -26.96 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.26 15.33 6.54 40.19 0.26 15.59 16 10 C -0.34 -18.30 9.83 22.87 0.22 -18.07 16 11 C -0.03 -1.55 10.15 22.39 0.23 -1.32 16 12 C -0.36 -16.94 7.99 22.73 0.18 -16.75 16 13 C 0.40 20.15 7.48 133.40 1.00 21.15 16 14 N -0.69 -28.58 5.84 -300.73 -1.76 -30.33 16 15 C 0.07 2.10 2.86 4.51 0.01 2.11 16 16 C -0.12 -2.51 10.04 30.60 0.31 -2.20 16 17 C -0.16 -3.25 7.13 -9.89 -0.07 -3.32 16 18 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 19 C 0.13 2.47 6.51 86.53 0.56 3.04 16 20 N -0.62 -17.76 3.39 -802.65 -2.72 -20.48 16 21 C 0.61 20.32 7.89 86.44 0.68 21.01 16 22 O -0.57 -24.23 17.24 -4.33 -0.07 -24.30 16 23 C -0.10 -2.67 6.97 24.07 0.17 -2.50 16 24 C -0.13 -2.93 10.62 22.39 0.24 -2.69 16 25 C -0.23 -3.27 10.87 22.07 0.24 -3.03 16 26 C 0.01 0.15 12.08 67.10 0.81 0.96 16 27 O -0.16 -2.96 7.80 -4.99 -0.04 -3.00 16 28 C 0.13 4.24 4.93 85.80 0.42 4.66 16 29 N -0.57 -33.00 7.92 -186.59 -1.48 -34.47 16 30 H 0.28 13.83 8.29 -92.71 -0.77 13.07 16 31 H 0.10 5.10 8.06 -2.91 -0.02 5.07 16 32 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 33 H 0.13 5.03 4.69 -2.91 -0.01 5.02 16 34 H 0.39 16.56 8.95 -92.71 -0.83 15.73 16 35 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 1.81 5.55 -2.39 -0.01 1.79 16 38 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.26 -0.11 8.06 -2.92 -0.02 -0.13 16 42 H 0.11 2.86 7.93 -2.39 -0.02 2.84 16 43 H 0.07 2.97 5.89 -2.39 -0.01 2.96 16 Total: -1.00 -80.52 363.09 2.41 -78.11 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: 0.24 Total: 40.71 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.95 Total: -6.51 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -5.70 Total: -126.92 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.11 Total: -27.30 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -80.52 2.41 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163638582.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.539 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds