Wall clock time and date at job start Tue Mar 31 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30586 * 1 3 3 Si 1.86807 * 119.99895 * 2 1 4 4 H 1.48497 * 109.47294 * 274.63262 * 3 2 1 5 5 H 1.48497 * 109.47042 * 34.63598 * 3 2 1 6 6 H 1.48503 * 109.46730 * 154.63466 * 3 2 1 7 7 C 1.40352 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00103 * 196.30995 * 7 2 1 9 9 C 1.40177 * 120.00004 * 16.30594 * 7 2 1 10 10 C 1.39069 * 119.74464 * 204.09500 * 9 7 2 11 11 C 1.42020 * 118.74229 * 180.24874 * 10 9 7 12 12 N 1.32219 * 120.83097 * 179.75517 * 11 10 9 13 13 C 1.46504 * 119.99914 * 179.71949 * 12 11 10 14 14 C 1.56995 * 120.49636 * 247.06850 * 13 12 11 15 15 C 1.53000 * 59.75938 * 248.95292 * 14 13 12 16 16 H 1.09009 * 119.53665 * 112.46983 * 15 14 13 17 17 C 1.54384 * 118.12333 * 267.56881 * 15 14 13 18 18 N 1.48143 * 104.61897 * 89.20519 * 17 15 14 19 19 C 1.34783 * 127.83896 * 140.41212 * 18 17 15 20 20 O 1.21691 * 120.00012 * 179.97438 * 19 18 17 21 21 C 1.46654 * 119.99556 * 0.02562 * 19 18 17 22 22 C 1.36552 * 125.98304 * 180.02562 * 21 19 18 23 23 C 1.40369 * 106.70385 * 179.97438 * 22 21 19 24 24 C 1.35122 * 107.11882 * 359.97438 * 23 22 21 25 25 O 1.33940 * 108.76828 * 359.75590 * 24 23 22 26 26 C 1.48141 * 104.32610 * 320.41725 * 18 17 15 27 27 C 1.46914 * 118.33501 * 359.47979 * 11 10 9 28 28 C 1.34377 * 119.36890 * 0.24983 * 27 11 10 29 29 N 1.36426 * 121.21708 * 0.02562 * 28 27 11 30 30 H 0.97002 * 119.08132 * 179.97438 * 29 28 27 31 31 H 0.97006 * 119.99892 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.62553 * 359.97438 * 10 9 7 33 33 H 1.08997 * 118.42090 * 142.02851 * 14 13 12 34 34 H 1.09001 * 116.94703 * 356.53747 * 14 13 12 35 35 H 1.09003 * 110.40901 * 330.42312 * 17 15 14 36 36 H 1.09007 * 110.40695 * 207.99113 * 17 15 14 37 37 H 1.07998 * 126.64847 * 359.97438 * 22 21 19 38 38 H 1.07998 * 126.43921 * 179.97438 * 23 22 21 39 39 H 1.07993 * 125.62177 * 180.02562 * 24 23 22 40 40 H 1.08997 * 110.41308 * 158.36844 * 26 18 17 41 41 H 1.09004 * 110.40948 * 280.68145 * 26 18 17 42 42 H 1.08001 * 120.31386 * 180.27901 * 27 11 10 43 43 H 1.07995 * 119.39082 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 2.3894 2.1031 -1.3955 5 1 1.4897 2.6224 0.7957 6 1 3.5830 1.4139 0.5998 7 6 2.0076 -1.2155 -0.0005 8 1 3.0550 -1.2345 0.2621 9 6 1.3490 -2.4049 -0.3419 10 6 1.8403 -3.6220 0.1176 11 6 1.1594 -4.8143 -0.2455 12 7 1.5933 -5.9941 0.1644 13 6 0.8733 -7.2120 -0.2160 14 6 0.1270 -8.0678 0.8681 15 6 1.3799 -8.6159 0.1820 16 1 2.2925 -8.7554 0.7617 17 6 1.1972 -9.4799 -1.0843 18 7 1.2030 -8.5092 -2.2033 19 6 1.7782 -8.6469 -3.4144 20 8 1.6933 -7.7512 -4.2338 21 6 2.5054 -9.8768 -3.7451 22 6 3.1318 -10.1449 -4.9285 23 6 3.6934 -11.4255 -4.8066 24 6 3.3896 -11.8770 -3.5698 25 8 2.6785 -10.9387 -2.9312 26 6 0.4332 -7.3526 -1.6892 27 6 -0.0426 -4.7034 -1.0829 28 6 -0.4577 -3.4894 -1.4824 29 7 0.2167 -2.3586 -1.1252 30 1 -0.1102 -1.4982 -1.4314 31 1 -0.4850 0.8401 0.0004 32 1 2.7255 -3.6602 0.7353 33 1 -0.8289 -8.5202 0.6042 34 1 0.2226 -7.7443 1.9046 35 1 0.2466 -10.0119 -1.0476 36 1 2.0237 -10.1833 -1.1870 37 1 3.1849 -9.4971 -5.7910 38 1 4.2616 -11.9512 -5.5597 39 1 3.6768 -12.8347 -3.1616 40 1 0.6831 -6.4508 -2.2482 41 1 -0.6369 -7.5514 -1.7488 42 1 -0.5876 -5.5891 -1.3742 43 1 -1.3415 -3.4075 -2.0976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163640649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:19 Heat of formation + Delta-G solvation = 74.143824 kcal Electronic energy + Delta-G solvation = -28372.754335 eV Core-core repulsion = 24386.368586 eV Total energy + Delta-G solvation = -3986.385748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78919 -39.94081 -38.61683 -37.89551 -34.58406 -33.72078 -33.15905 -32.59362 -30.74419 -30.14557 -28.49568 -27.69784 -26.16695 -25.87164 -22.79888 -21.92035 -21.67120 -21.48843 -20.58368 -19.87483 -19.03417 -17.82780 -17.55137 -16.82472 -16.59769 -16.45087 -15.65318 -15.41204 -15.21426 -15.08652 -14.38750 -13.87029 -13.75811 -13.44884 -13.26626 -13.15812 -13.01515 -12.86775 -12.83050 -12.53638 -12.17152 -11.84675 -11.62228 -11.59401 -11.29434 -11.18229 -11.03027 -10.72598 -10.44015 -10.33283 -10.21654 -10.20390 -9.79764 -9.61089 -9.06418 -8.91593 -8.57989 -8.26868 -7.57248 -7.33937 -6.02178 -4.85672 1.00360 2.22544 2.53168 2.55083 2.65340 2.86379 2.91640 3.06916 3.12456 3.24151 3.61699 3.96231 4.27960 4.49229 4.58123 4.75110 4.81877 4.90080 5.06273 5.13952 5.24461 5.41824 5.49574 5.55416 5.60839 5.64403 5.66097 5.83654 5.90345 6.07777 6.13207 6.17011 6.21577 6.36839 6.48820 6.53889 6.58317 6.64831 6.72229 6.76036 6.81530 7.33425 7.57894 7.63513 7.71032 7.90559 8.12090 8.17921 8.23634 8.73415 8.85526 9.61825 9.65856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002520 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.582077 B =11107.047306 C =11752.078519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.076 3.924 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.104 0.896 9 C 0.334 3.666 10 C -0.355 4.355 11 C 0.292 3.708 12 N -0.628 5.628 13 C 0.063 3.937 14 C -0.152 4.152 15 C -0.179 4.179 16 H 0.114 0.886 17 C 0.127 3.873 18 N -0.608 5.608 19 C 0.616 3.384 20 O -0.522 6.522 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.224 4.224 24 C -0.017 4.017 25 O -0.160 6.160 26 C 0.116 3.884 27 C -0.303 4.303 28 C 0.127 3.873 29 N -0.599 5.599 30 H 0.414 0.586 31 H 0.293 0.707 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.208 0.792 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.122 0.878 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -13.806 -5.386 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.142 4.142 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.122 0.878 9 C 0.225 3.775 10 C -0.384 4.384 11 C 0.133 3.867 12 N -0.354 5.354 13 C -0.033 4.033 14 C -0.192 4.192 15 C -0.199 4.199 16 H 0.132 0.868 17 C 0.005 3.995 18 N -0.340 5.340 19 C 0.405 3.595 20 O -0.401 6.401 21 C -0.115 4.115 22 C -0.148 4.148 23 C -0.243 4.243 24 C -0.087 4.087 25 O -0.055 6.055 26 C -0.007 4.007 27 C -0.333 4.333 28 C -0.003 4.003 29 N -0.209 5.209 30 H 0.254 0.746 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.225 0.775 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.140 0.860 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.062 -13.672 -5.123 14.600 hybrid contribution -0.500 0.789 -0.694 1.164 sum -0.562 -12.883 -5.817 14.147 Atomic orbital electron populations 1.69344 1.07827 1.30968 1.35720 1.26216 0.94969 1.02476 0.90574 0.85981 0.80706 0.78951 0.79503 1.18946 1.19899 1.17912 1.19557 0.99097 0.89520 1.41525 0.87761 1.17639 0.81474 0.94375 0.84016 1.20200 1.10077 0.88055 1.20032 1.20168 0.87640 0.92496 0.86376 1.73305 1.30340 0.94287 1.37506 1.23268 0.98866 0.92132 0.89069 1.23783 0.93981 1.02860 0.98545 1.23591 0.99756 0.97550 0.99010 0.86809 1.22021 1.02050 0.91080 0.84355 1.49203 1.52336 1.19751 1.12672 1.16138 0.78288 0.83962 0.81143 1.90889 1.61240 1.39747 1.48196 1.22151 1.07958 0.89682 0.91727 1.21964 0.97937 0.96979 0.97922 1.21827 1.06930 0.96831 0.98708 1.24428 0.96877 0.94355 0.93006 1.84185 1.57416 1.23275 1.40631 1.22743 0.93842 0.89308 0.94800 1.22663 1.03777 0.95932 1.10927 1.21319 0.95155 0.87402 0.96422 1.42087 1.25399 1.08644 1.44766 0.74606 0.89567 0.86738 0.89836 0.88266 0.91011 0.89300 0.82271 0.82720 0.77517 0.88072 0.91409 0.86014 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.44 11.15 55.57 0.62 -16.82 16 2 C 0.08 1.64 5.18 -17.29 -0.09 1.55 16 3 Si 0.93 16.26 29.59 -169.99 -5.03 11.23 16 4 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 7 C -0.46 -10.87 9.03 -38.06 -0.34 -11.21 16 8 H 0.10 2.39 7.90 -52.49 -0.41 1.98 16 9 C 0.33 8.08 6.35 -84.16 -0.53 7.54 16 10 C -0.35 -8.98 9.83 -37.83 -0.37 -9.35 16 11 C 0.29 7.11 6.61 -82.74 -0.55 6.56 16 12 N -0.63 -15.12 11.00 -41.29 -0.45 -15.57 16 13 C 0.06 1.25 3.10 -128.15 -0.40 0.85 16 14 C -0.15 -2.49 10.29 -24.57 -0.25 -2.74 16 15 C -0.18 -2.98 7.00 -89.12 -0.62 -3.60 16 16 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 17 C 0.13 1.85 6.50 -2.41 -0.02 1.84 16 18 N -0.61 -10.64 3.32 -170.86 -0.57 -11.21 16 19 C 0.62 11.21 7.88 -12.86 -0.10 11.11 16 20 O -0.52 -11.04 17.13 5.20 0.09 -10.95 16 21 C -0.06 -0.94 6.98 -36.80 -0.26 -1.20 16 22 C -0.13 -1.63 10.62 -39.39 -0.42 -2.05 16 23 C -0.22 -2.15 10.87 -39.89 -0.43 -2.58 16 24 C -0.02 -0.15 12.08 29.62 0.36 0.21 16 25 O -0.16 -1.99 7.80 4.98 0.04 -1.95 16 26 C 0.12 2.15 4.69 -2.41 -0.01 2.14 16 27 C -0.30 -6.42 7.98 -37.43 -0.30 -6.72 16 28 C 0.13 2.49 11.15 -16.87 -0.19 2.30 16 29 N -0.60 -12.94 4.88 -10.84 -0.05 -13.00 16 30 H 0.41 8.53 6.40 -40.82 -0.26 8.27 16 31 H 0.29 5.67 8.29 -40.82 -0.34 5.33 16 32 H 0.11 2.96 8.06 -52.49 -0.42 2.54 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.20 5.54 -51.93 -0.29 0.91 16 37 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.10 2.16 5.68 -51.93 -0.29 1.87 16 41 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 42 H 0.12 2.34 4.83 -52.49 -0.25 2.09 16 43 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -29.74 361.69 -9.29 -39.03 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -4.86 Total: 19.15 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.53 Total: -5.36 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.45 Total: -56.59 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.13 Total: -12.90 kcal Atomic # 14 Polarization: 16.26 SS G_CDS: -5.03 Total: 11.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.74 -9.29 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163640649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.176 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds